mRNA_L-elsbetiae_contig7964.16932.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7964.16932.1
Unique NamemRNA_L-elsbetiae_contig7964.16932.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7964.16932.1 vs. uniprot
Match: D7G0S6_ECTSI (Similar to ubiquitin specific peptidase 15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S6_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.660e-8
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 2 
Query:   80 PPAPEVQKERIAEVMKLEMNQGQVWYVLGSK 172
            PPAPEVQ+E IAE MKLEM QGQVWYVLGSK
Sbjct:   10 PPAPEVQREMIAEAMKLEMKQGQVWYVLGSK 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7964.16932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0S6_ECTSI2.660e-887.10Similar to ubiquitin specific peptidase 15 n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7964contigL-elsbetiae_contig7964:4637..5989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816880.6513183-CDS-L-elsbetiae_contig7964:4636..47841622816880.6513183-CDS-L-elsbetiae_contig7964:4636..4784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7964 4637..4784 +
1691683883.313641-CDS-L-elsbetiae_contig7964:4636..47841691683883.313641-CDS-L-elsbetiae_contig7964:4636..4784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7964 4637..4784 +
1622816880.6692731-CDS-L-elsbetiae_contig7964:5963..59891622816880.6692731-CDS-L-elsbetiae_contig7964:5963..5989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7964 5964..5989 +
1691683883.322933-CDS-L-elsbetiae_contig7964:5963..59891691683883.322933-CDS-L-elsbetiae_contig7964:5963..5989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7964 5964..5989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7964.16932.1prot_L-elsbetiae_contig7964.16932.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7964 4637..5989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7964.16932.1

>prot_L-elsbetiae_contig7964.16932.1 ID=prot_L-elsbetiae_contig7964.16932.1|Name=mRNA_L-elsbetiae_contig7964.16932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
AAGEVKGSSDRQQYHGSRNVTAAFGATTGPRGSKGKDSRGYEARDEPGTG
LVCPGQQM
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mRNA from alignment at L-elsbetiae_contig7964:4637..5989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7964.16932.1 ID=mRNA_L-elsbetiae_contig7964.16932.1|Name=mRNA_L-elsbetiae_contig7964.16932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1353bp|location=Sequence derived from alignment at L-elsbetiae_contig7964:4637..5989+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGGAGAAGTCAAAGGTAGCAGTGACAGACAGCAATACCATGGCAG
CAGGAATGTCACCGCCGCCTTTGGTGCCACCACCGGCCCCAGAGGTTCAA
AAGGAAAGGATAGCCGAGGTTATGAAGCTCGAGATGAACCAGGGACAGGT
GTGTTTCGAAAAGCGGCCTCTTCGCCTCCGGAAAGAGAGTAGTAGATGAA
GCTCACCGCTCTCTCAACCGGAACAAGCAGAGCTCCCGTGGGGTAGCACA
GTAGGATGCTGGTGCAAAAGTTGTAGCACATACGCACTCGCTGCTTGTAG
CATTAGTCCATGGGATTGGAGAGAGCTCGTTTGTTTTCGTACATATCAAT
ATCAGTATGGGCAAGACTTCAAATTTCTTCGTTCGCTTCGCAGATCACGT
GGCGCGTTGTACCTTGTTCCTGGCGGATCAGCCTGCTGGTACGGATGTAT
AACGACTGTCTGGAATTTTTCTGACAGGGTTCCCTCCACCTCTGCTGGCT
TTTGTGCGAAAGACTACTCAGAGGCATACATAAGAACAAGAGGACGGCTT
GCTGCTTTTCGAAATCGGCAGGTTGTACACCGCCTGTAGACTGCAATACT
CCGGAAAGAAAGCAGGCACACCCATCCCCCACATCCAACATCCAACCCCC
CCCCACGTCAGCACACCGGTTTTCAAGCACAAAATATGATCCAATGACGG
GCTGTCAGTCGTCCAAATCCCTGCGCCGCATCGGCAACTGGGCTACACAA
TTTGACTGCCTGCGTGCAACATCTCCGACGTGAAGTTTGCCAGCTCGACC
TCTTATTAGCCTCCACAATAGGAGCAGTAACACACGGCGGTGACACGATG
TGGCCGGAGTTGCCCAAGAACCTTGGAGGTGCATATGCATGAGATAGATC
CTTGGACATGGCGGTCCCCTCTGCTTTCTGTGTTTGAGGTTGCTGGGAAG
CTTGCACGGCTTTCTTTCCTGGAAAATATTGCGGCTTACACGGCTTTCTT
TCCTGGAAAATATCCGGCAGCTCAGATGGTGGGGTCGAAAAAAGCGGCAC
AGTAAGTAGGTAGCTTGGTAGCTACATATCCCGTCGCACGATTACGGGCA
CCGTTTGGAGCCCAGGTACTTACGCGTCCACGGTTGCCCCCTCTCAATTC
CGTACTACGACACGCACTCTTATGGGAACGCTCGCCACCCGCCTTCTAGT
GCGCCCCCCCTCCCCACCGCTGCTAAATGTCTACAGTACCTACATTTGTT
CTGGATGTGAAGAATATGGCTGGAACCGTCCGCACAAACCACCAAAACAA
ACAACCTATTGTAACTCTCATAAGCAGGTCTGGTATGTCCTGGGCAGCAA
ATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7964:4637..5989+

>mRNA_L-elsbetiae_contig7964.16932.1 ID=mRNA_L-elsbetiae_contig7964.16932.1|Name=mRNA_L-elsbetiae_contig7964.16932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig7964:4637..5989+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGGAGAAGTCAAAGGTAGCAGTGACAGACAGCAATACCATGGCAG
CAGGAATGTCACCGCCGCCTTTGGTGCCACCACCGGCCCCAGAGGTTCAA
AAGGAAAGGATAGCCGAGGTTATGAAGCTCGAGATGAACCAGGGACAGGC
CGCCGGAGAAGTCAAAGGTAGCAGTGACAGACAGCAATACCATGGCAGCA
GGAATGTCACCGCCGCCTTTGGTGCCACCACCGGCCCCAGAGGTTCAAAA
GGAAAGGATAGCCGAGGTTATGAAGCTCGAGATGAACCAGGGACAGGTCT
GGTATGTCCTGGGCAGCAAATGGTCTGGTATGTCCTGGGCAGCAAATG
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