mRNA_L-elsbetiae_contig7961.16926.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7961.16926.1
Unique NamemRNA_L-elsbetiae_contig7961.16926.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Match: E9HT92_DAPPU (Uncharacterized protein n=2 Tax=Daphnia TaxID=6668 RepID=E9HT92_DAPPU)

HSP 1 Score: 57.8 bits (138), Expect = 1.270e-9
Identity = 29/56 (51.79%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    1 CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSCWAATAAAAFTPSL 168
            CN  V ACY + GA +G  T G  VPAV++GCN ALG CM+ C     AA F P+L
Sbjct:   33 CNAAVVACYTAGGATFGTVTAGVGVPAVIMGCNAALGVCMAGC----VAAGFAPTL 84          
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Match: A0A1C7N6S2_9FUNG (Uncharacterized protein n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N6S2_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 1.780e-9
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSCWAA 138
            CN +  ACYA AG  +G  T GA +PAV++GCN ALG CM++C AA
Sbjct:   18 CNAVAVACYAGAGFTFGTVTAGAGIPAVILGCNAALGTCMTACVAA 63          
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Match: A0A060SDH7_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SDH7_PYCCI)

HSP 1 Score: 56.6 bits (135), Expect = 3.700e-9
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSCWAATAAAAFTP 162
            CN+L  ACYA+ G  +G  T GA VPAV++GCN ALG CM++C    AA A  P
Sbjct:   34 CNSLAVACYAAGGFTFGTVTAGAGVPAVVLGCNAALGTCMAAC----AAVALAP 83          
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Match: S2JF41_MUCC1 (Uncharacterized protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2JF41_MUCC1)

HSP 1 Score: 56.2 bits (134), Expect = 5.010e-9
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSCWAA 138
            CN +  ACY++AG  +G  T GA VPAV++GCN ALG CM+ C AA
Sbjct:   32 CNAVAVACYSAAGFTFGTVTAGAGVPAVILGCNTALGVCMAGCVAA 77          
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Match: A0A662WWU6_9STRA (Protein kinase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWU6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.240e-8
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSCWAA 138
            CN +V ACY +AGAV+G  T GA V   ++GCN ALG CM++C AA
Sbjct:  642 CNVIVVACYGAAGAVFGTVTAGAGVAPAIIGCNAALGVCMTACVAA 687          
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Match: A0A4Y9XXV6_9APHY (Uncharacterized protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XXV6_9APHY)

HSP 1 Score: 52.8 bits (125), Expect = 1.220e-7
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSC 129
            CNT+V ACYA+AG  +G      AVPAV++GCN ALG C ++C
Sbjct:   33 CNTVVVACYAAAGFTFGTVIAAPAVPAVILGCNAALGTCAATC 75          
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Match: A0A225UYZ7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UYZ7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.690e-7
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSCWAA 138
            CN +  ACYA+AGAV+G  T G      +VGCN ALGACM+ C AA
Sbjct:   33 CNGVAVACYAAAGAVFGTVTAGVGAAPAVVGCNIALGACMTGCVAA 78          
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Match: A0A284RVV8_ARMOS (Uncharacterized protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284RVV8_ARMOS)

HSP 1 Score: 52.4 bits (124), Expect = 1.770e-7
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    1 CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSC 129
            CN +  ACYA+AGA +G     AA PAV++GCN ALG C ++C
Sbjct:   34 CNAMAVACYAAAGATFGTVVAAAATPAVILGCNVALGTCSATC 76          
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Match: UPI001F8A34E2 (uncharacterized protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=UPI001F8A34E2)

HSP 1 Score: 52.8 bits (125), Expect = 1.820e-7
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSC 129
            CNT+V ACYA+AG  +G      AVPAV++GCN ALG C ++C
Sbjct:   51 CNTVVVACYAAAGFTFGTVIAAPAVPAVILGCNAALGTCAATC 93          
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Match: A0A1Y2IE73_PYCCO (Cysteine-rich protein n=1 Tax=Trametes coccinea BRFM310 TaxID=1353009 RepID=A0A1Y2IE73_PYCCO)

HSP 1 Score: 52.0 bits (123), Expect = 2.450e-7
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1
Query:    1 CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSCWAATAAAAFTP 162
            CN L  ACYA+AG  +G  T G   PAV++GCN ALG C ++C    A  A TP
Sbjct:   34 CNALAVACYAAAGYTFGTVTAGLGTPAVVLGCNAALGKCSAAC----AVVALTP 83          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7961.16926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
E9HT92_DAPPU1.270e-951.79Uncharacterized protein n=2 Tax=Daphnia TaxID=6668... [more]
A0A1C7N6S2_9FUNG1.780e-956.52Uncharacterized protein n=1 Tax=Choanephora cucurb... [more]
A0A060SDH7_PYCCI3.700e-953.70Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
S2JF41_MUCC15.010e-956.52Uncharacterized protein n=1 Tax=Mucor circinelloid... [more]
A0A662WWU6_9STRA9.240e-856.52Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A4Y9XXV6_9APHY1.220e-755.81Uncharacterized protein n=1 Tax=Fomitopsis rosea T... [more]
A0A225UYZ7_9STRA1.690e-756.52Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A284RVV8_ARMOS1.770e-753.49Uncharacterized protein n=1 Tax=Armillaria ostoyae... [more]
UPI001F8A34E21.820e-755.81uncharacterized protein n=1 Tax=Fomitopsis rosea T... [more]
A0A1Y2IE73_PYCCO2.450e-750.00Cysteine-rich protein n=1 Tax=Trametes coccinea BR... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7961contigL-elsbetiae_contig7961:1150..1320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionConserved zygote-specific protein homologue
Ec32 orthologEc-13_002690.1
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816880.4651687-CDS-L-elsbetiae_contig7961:1149..13201622816880.4651687-CDS-L-elsbetiae_contig7961:1149..1320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7961 1150..1320 +
1691683883.2263048-CDS-L-elsbetiae_contig7961:1149..13201691683883.2263048-CDS-L-elsbetiae_contig7961:1149..1320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7961 1150..1320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7961.16926.1prot_L-elsbetiae_contig7961.16926.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7961 1150..1320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7961.16926.1

>prot_L-elsbetiae_contig7961.16926.1 ID=prot_L-elsbetiae_contig7961.16926.1|Name=mRNA_L-elsbetiae_contig7961.16926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
CNTLVCACYASAGAVYGAATGGAAVPAVLVGCNKALGACMSSCWAATAAA
AFTPSL*
back to top

mRNA from alignment at L-elsbetiae_contig7961:1150..1320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7961.16926.1 ID=mRNA_L-elsbetiae_contig7961.16926.1|Name=mRNA_L-elsbetiae_contig7961.16926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=171bp|location=Sequence derived from alignment at L-elsbetiae_contig7961:1150..1320+ (Laminarionema elsbetiae ELsaHSoW15)
TGCAATACCCTGGTCTGCGCCTGCTACGCTTCCGCAGGCGCCGTCTACGG CGCTGCCACTGGCGGAGCGGCGGTGCCCGCCGTCCTGGTTGGCTGCAATA AAGCGCTTGGAGCCTGCATGTCCAGCTGCTGGGCAGCTACCGCAGCGGCG GCCTTCACCCCCTCTCTTTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7961:1150..1320+

>mRNA_L-elsbetiae_contig7961.16926.1 ID=mRNA_L-elsbetiae_contig7961.16926.1|Name=mRNA_L-elsbetiae_contig7961.16926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig7961:1150..1320+ (Laminarionema elsbetiae ELsaHSoW15)
TGCAATACCCTGGTCTGCGCCTGCTACGCTTCCGCAGGCGCCGTCTACGG
CGCTGCCACTGGCGGAGCGGCGGTGCCCGCCGTCCTGGTTGGCTGCAATA
AAGCGCTTGGAGCCTGCATGTCCAGCTGCTGGGCAGCTACCGCAGCGGCG
GCCTTCACCCCCTCTCTTTAGTGCAATACCCTGGTCTGCGCCTGCTACGC
TTCCGCAGGCGCCGTCTACGGCGCTGCCACTGGCGGAGCGGCGGTGCCCG
CCGTCCTGGTTGGCTGCAATAAAGCGCTTGGAGCCTGCATGTCCAGCTGC
TGGGCAGCTACCGCAGCGGCGGCCTTCACCCCCTCTCTTTAG
back to top