mRNA_L-elsbetiae_contig7953.16921.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7953.16921.1
Unique NamemRNA_L-elsbetiae_contig7953.16921.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7953.16921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7953contigL-elsbetiae_contig7953:849..2675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size404
Cds size285
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7953.16921.1prot_L-elsbetiae_contig7953.16921.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7953 849..2558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816879.8121154-CDS-L-elsbetiae_contig7953:848..10051622816879.8121154-CDS-L-elsbetiae_contig7953:848..1005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7953 849..1005 +
1691683882.7563245-CDS-L-elsbetiae_contig7953:848..10051691683882.7563245-CDS-L-elsbetiae_contig7953:848..1005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7953 849..1005 +
1622816879.823152-CDS-L-elsbetiae_contig7953:1888..19861622816879.823152-CDS-L-elsbetiae_contig7953:1888..1986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7953 1889..1986 +
1691683882.7661119-CDS-L-elsbetiae_contig7953:1888..19861691683882.7661119-CDS-L-elsbetiae_contig7953:1888..1986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7953 1889..1986 +
1622816879.8338273-CDS-L-elsbetiae_contig7953:2528..25581622816879.8338273-CDS-L-elsbetiae_contig7953:2528..2558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7953 2529..2558 +
1691683882.7773416-CDS-L-elsbetiae_contig7953:2528..25581691683882.7773416-CDS-L-elsbetiae_contig7953:2528..2558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7953 2529..2558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816879.8439322-UTR-L-elsbetiae_contig7953:2558..26751622816879.8439322-UTR-L-elsbetiae_contig7953:2558..2675Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7953 2559..2675 +
1691683882.7878256-UTR-L-elsbetiae_contig7953:2558..26751691683882.7878256-UTR-L-elsbetiae_contig7953:2558..2675Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7953 2559..2675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7953.16921.1

>prot_L-elsbetiae_contig7953.16921.1 ID=prot_L-elsbetiae_contig7953.16921.1|Name=mRNA_L-elsbetiae_contig7953.16921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
SKVDPNEDPPGGAAGAAGGVPPFEQAVPFSEPESSVKPEVGYSFPSKGKG
TGGVGGPSEDAAGSHPRGRRGAAEEGREEGHRRAKANDVQDGAT*
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mRNA from alignment at L-elsbetiae_contig7953:849..2675+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7953.16921.1 ID=mRNA_L-elsbetiae_contig7953.16921.1|Name=mRNA_L-elsbetiae_contig7953.16921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1827bp|location=Sequence derived from alignment at L-elsbetiae_contig7953:849..2675+ (Laminarionema elsbetiae ELsaHSoW15)
TCGAAGGTGGACCCCAACGAAGACCCCCCCGGAGGAGCAGCGGGAGCAGC
AGGAGGAGTGCCCCCCTTCGAGCAAGCTGTTCCATTCTCGGAGCCAGAGT
CATCGGTGAAGCCGGAAGTGGGGTACTCTTTCCCGTCCAAGGGCAAGGGG
ACTGGAGGTGGGCAAGCACTGTTTTTCCTTTCCTGGCTGAAAGTTGGGTT
GGTGTGGTCTGCAGCCTTCACTGCCGGCAGGAACCGTTGGCCTAGACCTG
GCACACATTTTTTGTGTTCTGGCTGTCGTGTAGGCGTGTTTGCCGACTGT
ACCATGTCGCCGTTGGTACCACTGGCTCTCGTGAACTTTGCACGTACTCC
CTACGGCACCAAGCATGGGAACTGCCACAGATGATGGCTTAGCTCTCGGC
CCAAATGATCTAGAACCGTGGGCACACGCCGGCATCCTCCCGCATGCTTT
TTGTCGTTGGGGAAATTGCCATGATACGTCAACTTGTGTGTCCGTTCTCG
TCCCGTCTAATGTCGTATTGAGTTCCAACTTCATGATAGGTCGTTCAAGT
CTCACATGATGCGAAATTGTGCCCCCTCCTTCCTCCCGACGGTTTACGAC
CGAACATGTTGGTGCCACATCTCCTATGCACATCTCTTCAGTGCTGCTGC
GAGGCGCCGAGTCATTCAGGCACTCTCCGAACCTTTTCGTTTTGTGTGCA
CGTGGAGAAGTCCAGACCCCCGACTGCGACCCGGCTTGTACCCACACCAA
AACCAGCTAACTCATGGTATTCAGTTCGGTGCTGAATTTGCTAGCGCTCG
GGGTTCTTCCACTCCTCCGTGCTGTTTGCCGCTTTGCTTGTGTGTCTAGC
GGCACGACGCCTTGACGACAGACGAGTAGATCGTTCCCGGTTCCTGAACC
CACCACCCTTGAGGTCGGCGGTAGACTCGTTCATTGATATCGTAATTTGT
CTCCCTCTGCATCCCTCAAGCGACCGCCGACCAACCCTGCTGTCTTCCGC
CGTCTTGGTTCTGTGGGTCTTCCCATCCCTTTGGGTGCAGGTGTCGGCGG
CCCTAGTGAAGACGCTGCAGGGAGCCATCCTCGAGGGCGGCGCGGAGCGG
CTGAAGAAGGGCGTGAAGAGGGCCACAGACGGGCCAAGGTGAGGAACGCC
AGCTGCGCTGCGGATTACGGTACTGCCTGTGTAGTCTTGCTGGTTGCTGA
CTTGTGTTTGCGCGTAGATGGCTGTTCGTGGGCGCTGCCCGGGGCATATA
GAGCCATCCACCAGCGGTTGTCGGCGCCGCATCCAACAGAAGATATCTCG
CGCCGCACTGCTTTTTGTCGTGTGCCGGTGTATCGCGCATGGCAGGGTGT
TCGATGTGTTTTCATGGTACGGCGGTGTCCATCGTTCTGGGCAAGATTGG
GTTATTTTGTCGTTTTATACCTACGTATTCGGTTTCACATGGCTGCTTGT
TGCTTTGGTTGCCGCTCGCTAAACTCTCTTGGCGTACCTACCTCGCTGGA
AAAATATGCAGACCACTCGCTTCACCACGCCACACTGACACTGGAAAGAA
GGTGCGATTTGAGAACGGATAGTCTGCACGATTTGCACGCCACTGCGACC
GTTTTAACTTGTTCTAACGTCGTGTTTACCACTCCACCTCCCGTTTGTAT
TTATGTTTTTTTCGAAACGCTCTCGACGAGGCCAATGACGTGCAAGACGG
GGCGACGTAGAGAGAGAGGGGCGTGGGGCCTTGGCAAGGTCGCCAAGGTT
ACAGGACGGAAGATAAAGCAAGACGTTGCCGGAGATGTCGTGGTATCGTC
ATGAGGGCATGTGATTTTATTGGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7953:849..2675+

>mRNA_L-elsbetiae_contig7953.16921.1 ID=mRNA_L-elsbetiae_contig7953.16921.1|Name=mRNA_L-elsbetiae_contig7953.16921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig7953:849..2675+ (Laminarionema elsbetiae ELsaHSoW15)
TCGAAGGTGGACCCCAACGAAGACCCCCCCGGAGGAGCAGCGGGAGCAGC
AGGAGGAGTGCCCCCCTTCGAGCAAGCTGTTCCATTCTCGGAGCCAGAGT
CATCGGTGAAGCCGGAAGTGGGGTACTCTTTCCCGTCCAAGGGCAAGGGG
ACTGGAGTCGAAGGTGGACCCCAACGAAGACCCCCCCGGAGGAGCAGCGG
GAGCAGCAGGAGGAGTGCCCCCCTTCGAGCAAGCTGTTCCATTCTCGGAG
CCAGAGTCATCGGTGAAGCCGGAAGTGGGGTACTCTTTCCCGTCCAAGGG
CAAGGGGACTGGAGGTGTCGGCGGCCCTAGTGAAGACGCTGCAGGGAGCC
ATCCTCGAGGGCGGCGCGGAGCGGCTGAAGAAGGGCGTGAAGAGGGCCAC
AGACGGGCCAAGGTGTCGGCGGCCCTAGTGAAGACGCTGCAGGGAGCCAT
CCTCGAGGGCGGCGCGGAGCGGCTGAAGAAGGGCGTGAAGAGGGCCACAG
ACGGGCCAAGGCCAATGACGTGCAAGACGGGGCGACGTAGGCCAATGACG
TGCAAGACGGGGCGACGTAG
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