mRNA_L-elsbetiae_contig795.16917.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig795.16917.1
Unique NamemRNA_L-elsbetiae_contig795.16917.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig795.16917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig795contigL-elsbetiae_contig795:12842..13745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size421
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816879.5146925-CDS-L-elsbetiae_contig795:12841..130361622816879.5146925-CDS-L-elsbetiae_contig795:12841..13036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig795 12842..13036 -
1691683882.5436192-CDS-L-elsbetiae_contig795:12841..130361691683882.5436192-CDS-L-elsbetiae_contig795:12841..13036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig795 12842..13036 -
1622816879.5249946-CDS-L-elsbetiae_contig795:13520..137451622816879.5249946-CDS-L-elsbetiae_contig795:13520..13745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig795 13521..13745 -
1691683882.5578604-CDS-L-elsbetiae_contig795:13520..137451691683882.5578604-CDS-L-elsbetiae_contig795:13520..13745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig795 13521..13745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig795.16917.1prot_L-elsbetiae_contig795.16917.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig795 12842..13745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig795.16917.1

>prot_L-elsbetiae_contig795.16917.1 ID=prot_L-elsbetiae_contig795.16917.1|Name=mRNA_L-elsbetiae_contig795.16917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
VSKLSEKNSGSRLPAPVLSPESAPSEAGAAPGVGRDSIAMAPVLSDTADH
QTLRMGREDEATATVGVDAAENSAEAAKGAPATDVLDGAVVKERSGATGA
AQGGKALPAMAAEAAETTVVQEIAAGGAPPSGGTGMGEAD
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mRNA from alignment at L-elsbetiae_contig795:12842..13745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig795.16917.1 ID=mRNA_L-elsbetiae_contig795.16917.1|Name=mRNA_L-elsbetiae_contig795.16917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=904bp|location=Sequence derived from alignment at L-elsbetiae_contig795:12842..13745- (Laminarionema elsbetiae ELsaHSoW15)
GTTTCGAAGCTGTCCGAGAAGAACAGCGGGTCCCGATTGCCCGCTCCCGT
TTTGTCCCCAGAGTCTGCGCCCTCAGAGGCTGGAGCTGCTCCAGGGGTTG
GCCGGGATTCTATCGCGATGGCCCCGGTGCTATCGGATACCGCAGACCAC
CAGACTCTCAGGATGGGCCGAGAGGATGAAGCTACAGCGACGGTCGGGGT
AGATGCAGCCGAAAATTCGGCCGAGGTGAGCGTCGGATCCAGCCGCTTGT
GCATGCGTTGTTGCGTAGATTGTTAAATAGTAGGGCGTGGCTGAACAAGC
CAAGTTTAAGTTTGCTACAGATGTCTTCGCGATTGTGTTTTTATTTTATT
TTTTGTTCTGTTTTTCGCGTCTGGGGCGGGAGTAATGCATTCAGCCTGAG
GTCGCTCGGTTCATCCCGCCCCGCAAAACACTGCCGCTGCAAGAGCACGC
ATCGTCAGACACGAGCACACGCTAACCCTGCTGCGCGAATGTTCGCCGAC
CCGAGGCTATCGGGCATACGCAACCGAACGCTCATGACTACCCCCCCTCC
CGTCTCACGTTGTGTCCCTCGCCGTACAGCAGTAGACCCCTTGGGCCTGT
CTGTGCGAGCCCGACCGCTTAGCTTGGGGCTCAAATGCCAGCGCGTTTCA
TAAGCACCAGCTTTTGTCCGCTCCTGAACTCTTTTTCTCCCTTGAACTCC
CCATGATAGGCGGCCAAGGGCGCACCCGCCACCGATGTCCTCGACGGAGC
AGTTGTCAAAGAGAGATCCGGGGCAACAGGCGCCGCCCAAGGCGGAAAGG
CGCTCCCGGCGATGGCGGCTGAGGCAGCTGAAACAACAGTTGTACAGGAG
ATCGCTGCAGGAGGGGCGCCGCCAAGTGGCGGTACGGGCATGGGCGAGGC
AGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig795:12842..13745-

>mRNA_L-elsbetiae_contig795.16917.1 ID=mRNA_L-elsbetiae_contig795.16917.1|Name=mRNA_L-elsbetiae_contig795.16917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig795:12842..13745- (Laminarionema elsbetiae ELsaHSoW15)
GTTTCGAAGCTGTCCGAGAAGAACAGCGGGTCCCGATTGCCCGCTCCCGT
TTTGTCCCCAGAGTCTGCGCCCTCAGAGGCTGGAGCTGCTCCAGGGGTTG
GCCGGGATTCTATCGCGATGGCCCCGGTGCTATCGGATACCGCAGACCAC
CAGACTCTCAGGATGGGCCGAGAGGATGAAGCTACAGCGACGGTCGGGGT
AGATGCAGCCGAAAATTCGGCCGAGGTTTCGAAGCTGTCCGAGAAGAACA
GCGGGTCCCGATTGCCCGCTCCCGTTTTGTCCCCAGAGTCTGCGCCCTCA
GAGGCTGGAGCTGCTCCAGGGGTTGGCCGGGATTCTATCGCGATGGCCCC
GGTGCTATCGGATACCGCAGACCACCAGACTCTCAGGATGGGCCGAGAGG
ATGAAGCTACAGCGACGGTCGGGGTAGATGCAGCCGAAAATTCGGCCGAG
GCGGCCAAGGGCGCACCCGCCACCGATGTCCTCGACGGAGCAGTTGTCAA
AGAGAGATCCGGGGCAACAGGCGCCGCCCAAGGCGGAAAGGCGCTCCCGG
CGATGGCGGCTGAGGCAGCTGAAACAACAGTTGTACAGGAGATCGCTGCA
GGAGGGGCGCCGCCAAGTGGCGGTACGGGCATGGGCGAGGCAGACGCGGC
CAAGGGCGCACCCGCCACCGATGTCCTCGACGGAGCAGTTGTCAAAGAGA
GATCCGGGGCAACAGGCGCCGCCCAAGGCGGAAAGGCGCTCCCGGCGATG
GCGGCTGAGGCAGCTGAAACAACAGTTGTACAGGAGATCGCTGCAGGAGG
GGCGCCGCCAAGTGGCGGTACGGGCATGGGCGAGGCAGAC
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