mRNA_L-elsbetiae_contig7946.16914.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7946.16914.1
Unique NamemRNA_L-elsbetiae_contig7946.16914.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7946.16914.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.450e-25
Identity = 240/289 (83.04%), Postives = 257/289 (88.93%), Query Frame = 2 
Query:   80 KVCHDSMRGVHTLLEVGGSIDIRDSAQRTLLHRACEEASINTVGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVEQGGANTRARAKLLHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGAPGPNGHRXXXXXXXXXXXXXXXXXXXXXXXXXXKDDRGRTALKYSNNRRCKERIREAERREERAAEAQRQLMLQQKRDKALRRRERELLDRVDLRSRVR 946
            +VCHD+M GV  LLE+GGSID+RD+AQRTLLHRACEEASI TV  XXXXXXXXXXXXXXXXXXXXXXXXXX      LLVE+ GA++RARAK++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A GP GHRXXXXXXXXXXXXXXXXXXXXXXXXXX       AL Y+++RRCKERIREA+RREERAAEAQRQL LQ+KRD   RRRE+ELLDRVDLR+R R
Sbjct:  223 QVCHDNMSGVDKLLEIGGSIDVRDTAQRTLLHRACEEASIATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEIVRLLVEKAGADSRARAKVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGPKGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALHYTDSRRCKERIREAQRREERAAEAQRQLALQKKRDDENRRREQELLDRVDLRARAR 511
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7946.16914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z2_ECTSI1.450e-2583.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7946contigL-elsbetiae_contig7946:2625..5791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue8.4e-21
Seed eggNOG ortholog2880.D7G7Z2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_009530.1
Exons6
Model size970
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7946.16914.1prot_L-elsbetiae_contig7946.16914.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7946 2631..5439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816879.2532337-UTR-L-elsbetiae_contig7946:2624..26301622816879.2532337-UTR-L-elsbetiae_contig7946:2624..2630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7946 2625..2630 -
1691683882.3400357-UTR-L-elsbetiae_contig7946:2624..26301691683882.3400357-UTR-L-elsbetiae_contig7946:2624..2630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7946 2625..2630 -
1622816879.3298154-UTR-L-elsbetiae_contig7946:5439..54541622816879.3298154-UTR-L-elsbetiae_contig7946:5439..5454Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7946 5440..5454 -
1691683882.4160676-UTR-L-elsbetiae_contig7946:5439..54541691683882.4160676-UTR-L-elsbetiae_contig7946:5439..5454Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7946 5440..5454 -
1622816879.3419213-UTR-L-elsbetiae_contig7946:5709..57911622816879.3419213-UTR-L-elsbetiae_contig7946:5709..5791Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7946 5710..5791 -
1691683882.42577-UTR-L-elsbetiae_contig7946:5709..57911691683882.42577-UTR-L-elsbetiae_contig7946:5709..5791Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7946 5710..5791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816879.2637346-CDS-L-elsbetiae_contig7946:2630..28791622816879.2637346-CDS-L-elsbetiae_contig7946:2630..2879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7946 2631..2879 -
1691683882.3533523-CDS-L-elsbetiae_contig7946:2630..28791691683882.3533523-CDS-L-elsbetiae_contig7946:2630..2879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7946 2631..2879 -
1622816879.273664-CDS-L-elsbetiae_contig7946:3470..36541622816879.273664-CDS-L-elsbetiae_contig7946:3470..3654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7946 3471..3654 -
1691683882.3658843-CDS-L-elsbetiae_contig7946:3470..36541691683882.3658843-CDS-L-elsbetiae_contig7946:3470..3654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7946 3471..3654 -
1622816879.2938638-CDS-L-elsbetiae_contig7946:4219..44411622816879.2938638-CDS-L-elsbetiae_contig7946:4219..4441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7946 4220..4441 -
1691683882.3821213-CDS-L-elsbetiae_contig7946:4219..44411691683882.3821213-CDS-L-elsbetiae_contig7946:4219..4441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7946 4220..4441 -
1622816879.3068929-CDS-L-elsbetiae_contig7946:4918..50371622816879.3068929-CDS-L-elsbetiae_contig7946:4918..5037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7946 4919..5037 -
1691683882.3917623-CDS-L-elsbetiae_contig7946:4918..50371691683882.3917623-CDS-L-elsbetiae_contig7946:4918..5037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7946 4919..5037 -
1622816879.3190613-CDS-L-elsbetiae_contig7946:5346..54391622816879.3190613-CDS-L-elsbetiae_contig7946:5346..5439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7946 5347..5439 -
1691683882.4030216-CDS-L-elsbetiae_contig7946:5346..54391691683882.4030216-CDS-L-elsbetiae_contig7946:5346..5439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7946 5347..5439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7946.16914.1

>prot_L-elsbetiae_contig7946.16914.1 ID=prot_L-elsbetiae_contig7946.16914.1|Name=mRNA_L-elsbetiae_contig7946.16914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=289bp
MRGVHTLLEVGGSIDIRDSAQRTLLHRACEEASINTVGKLLELGATVDAI
EKRKQTPLHRACERGRVGVVRLLVEQGGANTRARAKLLHEPLHVACLGNW
GEVVNFLLTEGHVDVEAPDKNGMRCLHLAVQKNRLEAIRELLKHGCDIEA
TLLDGLTRPLHIACSSGYEKAASLLLEHQADIGAPGPNGHRPLHLAAKEG
HPLMVELLIGAKADLHAKDDRGRTALKYSNNRRCKERIREAERREERAAE
AQRQLMLQQKRDKALRRRERELLDRVDLRSRVRTPGGM*
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mRNA from alignment at L-elsbetiae_contig7946:2625..5791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7946.16914.1 ID=mRNA_L-elsbetiae_contig7946.16914.1|Name=mRNA_L-elsbetiae_contig7946.16914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3167bp|location=Sequence derived from alignment at L-elsbetiae_contig7946:2625..5791- (Laminarionema elsbetiae ELsaHSoW15)
AGAAGGCCTATCGATCTCTGCAATGACCAAGAATCAGGCAGAATCATCGA
AGGCTTGCTAGGCAGAAGCGAAAAACTCAAAGGTGGTGGTATAGACGAAA
TGGTACGAATTATTGTGAAGCAAATGCCCTGATCAAACAGACTTTGGGCA
AAATGAAGCTGGCTGTCATTTATATGTTGTTGGGTGTCAAGATGCGCCAG
CTATTATTGAACGTTTACGTCCATGCGATTCGAATTGAACCCGGGGCCGG
GACTTCAACTCAAGAGTTACTCTCTCTGGGCGGCCGATTAACCCTATTTC
AGGTCTTGGTTCGCTAAAAAGCCGAGTCCATTCTCAGGTATGCCACGACA
GCATGAGGGGTGTGCATACGCTGCTGGAGGTTGGCGGATCGATTGACATC
AGGGACAGCGCGCAACGAACCCTTCTACATCGAGCCTGTGAAGAGGTGAT
CGCTTTCTCGCTCTTTGCAGCTTGGTCTCTCGATGATCAGCATACGTGAG
AGTGCGCGTTTTTTTCGTGCTGAGTGGCGTGCATTCACCACACCTACGGC
ATATACTTCGTATGAAGTAGAGCAGAGCAAGTGCTAAGTGGTACTCGTTG
GAATACCGCTACGAGTATGGCCGGAGAGACGAAGCAAGTTTGCTTTGGGT
TACAAGTAATACCCGAGGACCGATCCCCATGTCTATGATAGGCCAAGAAA
AAGTACACAATAAGTTTAGAGCGGATAGCGTTTTCACTCCCCCGCATATG
GCAGGCAAGCATCAACACGGTGGGTAAGCTGTTGGAGCTCGGAGCCACGG
TGGACGCGATCGAAAAGAGAAAGCAGACTCCACTCCATCGCGCTTGCGAG
CGAGGCCGCGTGGGTGTCGTCAGGTATGGTCGTGGGCTCACACCAATCGT
TGTATAGGTTCATCGTGCCAACGGACGACGTCGGCATGCACAGTGTCCGT
CGCGGTAGCGCCAGGAATAGTCCGAGCTGCACGTTAACGCTGTCGCCGAG
ATTTGATGTGATGGTGGTGGTGGTTGTGGGATGTCCCTCGTCGTAGCAAT
CGTTCTGTTGCTGGTGTTGTTGCTGTTAGCTTCACACTTAAAACCATTCC
GATCTCGCTACCCAGTACTTCCATCTGTCCGTACTGAGAAAAAAACGCGT
GGTCGCTTCCTAGCCCCTCAAGCTACGAGTAAACGTAAGGACACACGGGC
GGCACCGGCGGGGTTGTCCCAGTCAACACCATTCAGCGTACATACCTCTG
GCCTGCAGGTAGCCACTCTCATGCGCGGATCTAGAAGTGAAATGTTCGCC
ATTGACTACTGTTTCCTGTTTTGCACCGGGAAAATGTTTCGCATGGAAAG
GCTCTTGGTCGAGCAGGGAGGAGCGAACACTCGAGCCCGCGCGAAGCTTC
TGCACGAGCCACTGCACGTGGCATGCCTAGGCAACTGGGGCGAAGTGGTG
AATTTTCTGCTGACTGAGGGGCACGTGGACGTCGAGGCGCCCGATAAAAA
CGGCATGAGGTGTCTGCACCTGGCCGTCCAGAAGAACAGGCTGGAGGCGA
TTCGGGAGTTGCTCAAGCACGGGTGCGAGTGCTTTCGAAACCCTTGCTTC
CCTTGAAATCGAAGGAATTGAGTTTCGATGGGCCAATACAAGCAGTTGGA
ATGTCAGAAGTTTTCATGAAGCCGCCATTCCATAGCCCAGATGAGTAACA
CACAAGGTGCTTCGAAGGACCGCGCATGACCTCTTGATGTAGAAATGCAA
CGAGCGGAAACGAAAACATCGCTGCCCTTCCCGGTTGATTGGAAGCAGTC
CGTTCGGCCGAGGAACTGGCACGGAACATCTTGTTTTACTCTGAGCGCTT
GCGATGTCCTTCAACACTTCTTTCTGAAAAAGGGTGGCCGACCCTTCTGT
ATGTCGTTTTCCGCCGAAGATCGATTTCGTTGTTGCTGCAAGAAAAGTTG
GAAGTGTCAATGCAACGTTCGGTGATGTTGTTCTGAAAGCGTGTGCGGAC
ATCTTGGAAATAGTCGCCCCCTGTCTTCGCGCGCGTTTATCAGTGCATAC
ACCGCGAAGCCCCCAAACCTTAAAACTGTGCCGGTACGCACTAACTTGTG
GCACATGCACATCCGGTGTGGGCGCGTAAATGAACAGGTGTGACATCGAA
GCCACCCTGTTGGATGGATTAACTCGGCCGCTGCACATCGCGTGTTCGAG
TGGATACGAAAAGGCCGCTTCGCTGTTGCTCGAGCACCAAGCCGATATCG
GCGCACCTGGCCCCAACGGCCATCGCCCCTTACACCTGGCCGCCAAGGAA
GGGCATCCTCTCATGGTAGAGGTACGAGGCTCATAACCTGTAGTGATATG
CCTGAGAACGTGGCGCCGTTGATACATCAGAGTCCCACAAGAGTGCCCAC
AATCTGTACATTTCGTGTACTTAGCAGGCCAGAAAGGACGTTTCAAATTT
CAAACTGTGGATCTTTGATGTTACATCCCTCGGGGTTCACCGACATCGTC
TGTGTGGATAGTGCATTGGAAGCTTCCCTCGGCCCAAAGCAATGATTGAT
TCTGGTTTGCAAAGCTTTCCACGGTTTTATGACGGAACTCCCCCATGACT
GACCGTTACATAAGTCGTTTCTCTCTTCCCTAGCTAGGGCCAATAGCTGT
CTAGACCGAAGTTGAGACCGGTTGTCTACAGAATGCAACCCTCGTCTCTG
TTGCGTTCAGTAGTGTTTTTAGTTTTCACATATTTCAAGCAAATACAGCT
GCTCATGCTTGAATCACGCACCCCTCAAAACCCATTTTGTCGCCTTGAAC
AACTTCCATGAACCAGAACAACGACCATCCCCATTCCGATCCCAATACAC
CCGTGTTAGTACGATATTCTGATGCACTTCCTTCACACGTTTCCACCGAC
AAAATCGAGCAGCTTTTGATTGGCGCAAAGGCTGACCTGCACGCCAAAGA
CGACCGAGGTCGCACCGCTTTGAAGTACAGCAATAACCGGCGGTGCAAAG
AGAGAATTCGGGAGGCGGAAAGGAGAGAAGAAAGGGCTGCTGAGGCACAG
AGACAGCTGATGCTGCAGCAGAAACGAGACAAAGCGCTGCGACGTCGGGA
GCGGGAGCTTCTGGATAGAGTCGATCTTCGGTCAAGAGTGCGCACACCGG
GGGGCATGTAGTTTTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7946:2625..5791-

>mRNA_L-elsbetiae_contig7946.16914.1 ID=mRNA_L-elsbetiae_contig7946.16914.1|Name=mRNA_L-elsbetiae_contig7946.16914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1734bp|location=Sequence derived from alignment at L-elsbetiae_contig7946:2625..5791- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGGTGTGCATACGCTGCTGGAGGTTGGCGGATCGATTGACATCAG
GGACAGCGCGCAACGAACCCTTCTACATCGAGCCTGTGAAGAGATGAGGG
GTGTGCATACGCTGCTGGAGGTTGGCGGATCGATTGACATCAGGGACAGC
GCGCAACGAACCCTTCTACATCGAGCCTGTGAAGAGGCAAGCATCAACAC
GGTGGGTAAGCTGTTGGAGCTCGGAGCCACGGTGGACGCGATCGAAAAGA
GAAAGCAGACTCCACTCCATCGCGCTTGCGAGCGAGGCCGCGTGGGTGTC
GTCAGGCAAGCATCAACACGGTGGGTAAGCTGTTGGAGCTCGGAGCCACG
GTGGACGCGATCGAAAAGAGAAAGCAGACTCCACTCCATCGCGCTTGCGA
GCGAGGCCGCGTGGGTGTCGTCAGGCTCTTGGTCGAGCAGGGAGGAGCGA
ACACTCGAGCCCGCGCGAAGCTTCTGCACGAGCCACTGCACGTGGCATGC
CTAGGCAACTGGGGCGAAGTGGTGAATTTTCTGCTGACTGAGGGGCACGT
GGACGTCGAGGCGCCCGATAAAAACGGCATGAGGTGTCTGCACCTGGCCG
TCCAGAAGAACAGGCTGGAGGCGATTCGGGAGTTGCTCAAGCACGGGCTC
TTGGTCGAGCAGGGAGGAGCGAACACTCGAGCCCGCGCGAAGCTTCTGCA
CGAGCCACTGCACGTGGCATGCCTAGGCAACTGGGGCGAAGTGGTGAATT
TTCTGCTGACTGAGGGGCACGTGGACGTCGAGGCGCCCGATAAAAACGGC
ATGAGGTGTCTGCACCTGGCCGTCCAGAAGAACAGGCTGGAGGCGATTCG
GGAGTTGCTCAAGCACGGGTGTGACATCGAAGCCACCCTGTTGGATGGAT
TAACTCGGCCGCTGCACATCGCGTGTTCGAGTGGATACGAAAAGGCCGCT
TCGCTGTTGCTCGAGCACCAAGCCGATATCGGCGCACCTGGCCCCAACGG
CCATCGCCCCTTACACCTGGCCGCCAAGGAAGGGCATCCTCTCATGGTAG
AGGTGTGACATCGAAGCCACCCTGTTGGATGGATTAACTCGGCCGCTGCA
CATCGCGTGTTCGAGTGGATACGAAAAGGCCGCTTCGCTGTTGCTCGAGC
ACCAAGCCGATATCGGCGCACCTGGCCCCAACGGCCATCGCCCCTTACAC
CTGGCCGCCAAGGAAGGGCATCCTCTCATGGTAGAGCTTTTGATTGGCGC
AAAGGCTGACCTGCACGCCAAAGACGACCGAGGTCGCACCGCTTTGAAGT
ACAGCAATAACCGGCGGTGCAAAGAGAGAATTCGGGAGGCGGAAAGGAGA
GAAGAAAGGGCTGCTGAGGCACAGAGACAGCTGATGCTGCAGCAGAAACG
AGACAAAGCGCTGCGACGTCGGGAGCGGGAGCTTCTGGATAGAGTCGATC
TTCGGTCAAGAGTGCGCACACCGGGGGGCATGTAGCTTTTGATTGGCGCA
AAGGCTGACCTGCACGCCAAAGACGACCGAGGTCGCACCGCTTTGAAGTA
CAGCAATAACCGGCGGTGCAAAGAGAGAATTCGGGAGGCGGAAAGGAGAG
AAGAAAGGGCTGCTGAGGCACAGAGACAGCTGATGCTGCAGCAGAAACGA
GACAAAGCGCTGCGACGTCGGGAGCGGGAGCTTCTGGATAGAGTCGATCT
TCGGTCAAGAGTGCGCACACCGGGGGGCATGTAG
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