mRNA_L-elsbetiae_contig10119.169.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10119.169.1
Unique NamemRNA_L-elsbetiae_contig10119.169.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Match: A0A6H5K7C7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7C7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.490e-23
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:  142 PAAPFQLKVRMLRAEPMEALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSY 330
            P APF+LK R+L+AE + AL YGCMTW+P RDHYRLL + HHRL+LR  GYRRKRGTYRQLSY
Sbjct:   96 PGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKRGTYRQLSY 158
[Close]
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Match: A0A6H5JKD2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.380e-23
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:  142 PAAPFQLKVRMLRAEPMEALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSYGPEAGG-VPER 360
            P APF+LK R+L+AE + AL YGCMTW+P RDHYRLL + HHRL+LR  GYRRKRGTYRQLSY     G +P+R
Sbjct:  118 PGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALDGRLPKR 191
[Close]
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.550e-22
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  142 PAAPFQLKVRMLRAEPMEALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSY 330
            P APF+LK R+L+AE +EAL YGCMTW+P RDHYRLL + HHRL+LR  GYRR+RGTYRQLSY
Sbjct:  371 PGAPFRLKARLLQAEAVEALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRERGTYRQLSY 433
[Close]
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.780e-22
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:  142 PAAPFQLKVRMLRAEPMEALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSY 330
            P APF+LK R+L+AE +EAL YGCMTW+P R+HY +L + HHRL+LR  GYRRKRGTYRQLSY
Sbjct:   96 PGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSY 158
[Close]
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.070e-21
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:  142 PAAPFQLKVRMLRAEPMEALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSY 330
            P APF+LK R+L+AE +EAL YGCMTW+P R+HY +L + HHRL+LR  GYRRKRGTYRQLSY
Sbjct:  147 PGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSY 209
[Close]
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Match: A0A6H5KPJ4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.580e-21
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:  142 PAAPFQLKVRMLRAEPMEALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSY 330
            P APF+LK R+L+AE +EAL YGCMTW+P R HY LL + H+RL+LR  GYRRKRGTYRQLSY
Sbjct:  115 PGAPFRLKARLLQAEAVEALLYGCMTWSPRRGHYWLLQTTHYRLLLRVIGYRRKRGTYRQLSY 177
[Close]
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.720e-21
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:  142 PAAPFQLKVRMLRAEPMEALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSY 330
            P APF+LK R+L+AE +EAL YGCMTW+P R+HY +L + HHRL+LR  GYRRKRGTYRQLSY
Sbjct:  115 PGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSY 177
[Close]
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.440e-21
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:  142 PAAPFQLKVRMLRAEPMEALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSY 330
            P APF+LK R+L+AE + AL YGCMTW+P RDHYRLL + HHRL+LR  GYRRK GTYRQLSY
Sbjct:  237 PGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKGGTYRQLSY 299
[Close]
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.620e-21
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:  142 PAAPFQLKVRMLRAEPMEALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSY 330
            P APF+LK R+L+AE +EAL YGCMTW+P R+HY +L + HHRL+LR  GYRRKRGTYRQLSY
Sbjct:  398 PGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSY 460
[Close]
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.860e-21
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:  142 PAAPFQLKVRMLRAEPMEALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSY 330
            P APF+LK R+L+AE +EAL YGCMTW+P R+HY +L + HHRL+LR  GYRRKRGTYRQLSY
Sbjct:  510 PGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSY 572
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10119.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7C7_9PHAE3.490e-2373.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JKD2_9PHAE4.380e-2366.22Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7X5_9PHAE1.550e-2273.02Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLH5_9PHAE4.780e-2269.84Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE1.070e-2169.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPJ4_9PHAE1.580e-2169.84Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JWS4_9PHAE1.720e-2169.84Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLC4_9PHAE3.440e-2171.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE6.620e-2169.84Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ91_9PHAE6.860e-2169.84Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10119contigL-elsbetiae_contig10119:175..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size440
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815243.5252178-UTR-L-elsbetiae_contig10119:174..2191622815243.5252178-UTR-L-elsbetiae_contig10119:174..219Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10119 175..219 +
1691682791.9834301-UTR-L-elsbetiae_contig10119:174..2191691682791.9834301-UTR-L-elsbetiae_contig10119:174..219Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10119 175..219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815243.5361657-CDS-L-elsbetiae_contig10119:219..6121622815243.5361657-CDS-L-elsbetiae_contig10119:219..612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10119 220..612 +
1691682792.002891-CDS-L-elsbetiae_contig10119:219..6121691682792.002891-CDS-L-elsbetiae_contig10119:219..612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10119 220..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10119.169.1prot_L-elsbetiae_contig10119.169.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10119 220..612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10119.169.1

>prot_L-elsbetiae_contig10119.169.1 ID=prot_L-elsbetiae_contig10119.169.1|Name=mRNA_L-elsbetiae_contig10119.169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MYRHWCVAYRIYAKRPDLTAIAARDKCTKGVLPAAPFQLKVRMLRAEPME
ALPYGCMTWAPHRDHYRLLTSMHHRLILRATGYRRKRGTYRQLSYGPEAG
GVPERGSHCLTAASAVCRGLGKTAGRTTPET
back to top

mRNA from alignment at L-elsbetiae_contig10119:175..612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10119.169.1 ID=mRNA_L-elsbetiae_contig10119.169.1|Name=mRNA_L-elsbetiae_contig10119.169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig10119:175..612+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGGATAGAAATCTTTATTCATACTGTCTCTAGATCCCAGCAGCATGTA
CCGACACTGGTGTGTGGCATATCGAATCTACGCAAAAAGGCCAGACCTTA
CCGCTATAGCGGCGCGGGATAAATGCACCAAAGGAGTCCTTCCGGCAGCA
CCGTTTCAACTCAAGGTCCGTATGCTTCGGGCGGAGCCGATGGAGGCACT
GCCATATGGCTGCATGACTTGGGCTCCACATCGCGACCACTACCGGCTGC
TAACGTCGATGCACCACCGACTGATCCTACGAGCAACTGGTTACCGACGC
AAGCGCGGTACCTACCGACAGCTTTCCTACGGCCCTGAAGCTGGTGGGGT
GCCAGAGCGTGGAAGCCACTGTCTGACAGCGGCGTCTGCTGTTTGCCGGG
GCCTTGGCAAGACAGCCGGACGGACGACTCCCGAAACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10119:175..612+

>mRNA_L-elsbetiae_contig10119.169.1 ID=mRNA_L-elsbetiae_contig10119.169.1|Name=mRNA_L-elsbetiae_contig10119.169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig10119:175..612+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCGACACTGGTGTGTGGCATATCGAATCTACGCAAAAAGGCCAGA
CCTTACCGCTATAGCGGCGCGGGATAAATGCACCAAAGGAGTCCTTCCGG
CAGCACCGTTTCAACTCAAGGTCCGTATGCTTCGGGCGGAGCCGATGGAG
GCACTGCCATATGGCTGCATGACTTGGGCTCCACATCGCGACCACTACCG
GCTGCTAACGTCGATGCACCACCGACTGATCCTACGAGCAACTGGTTACC
GACGCAAGCGCGGTACCTACCGACAGCTTTCCTACGGCCCTGAAGCTGGT
GGGGTGCCAGAGCGTGGAAGCCACTGTCTGACAGCGGCGTCTGCTGTTTG
CCGGGGCCTTGGCAAGACAGCCGGACGGACGACTCCCGAAACGATGTACC
GACACTGGTGTGTGGCATATCGAATCTACGCAAAAAGGCCAGACCTTACC
GCTATAGCGGCGCGGGATAAATGCACCAAAGGAGTCCTTCCGGCAGCACC
GTTTCAACTCAAGGTCCGTATGCTTCGGGCGGAGCCGATGGAGGCACTGC
CATATGGCTGCATGACTTGGGCTCCACATCGCGACCACTACCGGCTGCTA
ACGTCGATGCACCACCGACTGATCCTACGAGCAACTGGTTACCGACGCAA
GCGCGGTACCTACCGACAGCTTTCCTACGGCCCTGAAGCTGGTGGGGTGC
CAGAGCGTGGAAGCCACTGTCTGACAGCGGCGTCTGCTGTTTGCCGGGGC
CTTGGCAAGACAGCCGGACGGACGACTCCCGAAACG
back to top