mRNA_L-elsbetiae_contig7866.16820.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7866.16820.1
Unique NamemRNA_L-elsbetiae_contig7866.16820.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7866.16820.1 vs. uniprot
Match: A0A6H5KUS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS5_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 7.220e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:    2 LGTLQRLPKLIGSESLARELVFTARK 79
            LGTLQRLPKLIGSESLARELVFTARK
Sbjct:   87 LGTLQRLPKLIGSESLARELVFTARK 112
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7866.16820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUS5_9PHAE7.220e-5100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7866contigL-elsbetiae_contig7866:2952..3513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7866.16820.1prot_L-elsbetiae_contig7866.16820.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7866 3083..3400 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.0999372-UTR-L-elsbetiae_contig7866:2951..30821622816870.0999372-UTR-L-elsbetiae_contig7866:2951..3082Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7866 2952..3082 +
1691683875.0988388-UTR-L-elsbetiae_contig7866:2951..30821691683875.0988388-UTR-L-elsbetiae_contig7866:2951..3082Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7866 2952..3082 +
1622816870.1246302-UTR-L-elsbetiae_contig7866:3400..35131622816870.1246302-UTR-L-elsbetiae_contig7866:3400..3513Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7866 3401..3513 +
1691683875.1256707-UTR-L-elsbetiae_contig7866:3400..35131691683875.1256707-UTR-L-elsbetiae_contig7866:3400..3513Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7866 3401..3513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.1126769-CDS-L-elsbetiae_contig7866:3082..34001622816870.1126769-CDS-L-elsbetiae_contig7866:3082..3400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7866 3083..3400 +
1691683875.1127503-CDS-L-elsbetiae_contig7866:3082..34001691683875.1127503-CDS-L-elsbetiae_contig7866:3082..3400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7866 3083..3400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7866.16820.1

>prot_L-elsbetiae_contig7866.16820.1 ID=prot_L-elsbetiae_contig7866.16820.1|Name=mRNA_L-elsbetiae_contig7866.16820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MCTRNSYPFICFSLCPALSKHHHCNYYQFTCSNLVLRSRFRDIPVYGIML
RSHITYPCTHCAKKTTEKNNYSRLDEFTVVAGVARASIYVSCIISPRNYN
RISQC*
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mRNA from alignment at L-elsbetiae_contig7866:2952..3513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7866.16820.1 ID=mRNA_L-elsbetiae_contig7866.16820.1|Name=mRNA_L-elsbetiae_contig7866.16820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=562bp|location=Sequence derived from alignment at L-elsbetiae_contig7866:2952..3513+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCGGCACGTTGCAGCGGCTACCGAAGCTCATCGGGAGCGAGTCTCTGG
CCAGAGAGTTGGTCTTCACGGCGAGGAAGTAAGTATCCTTCGTGCGCGAT
TTCAAGTAAAATCATGCATGTTCCCATGTAGATGTGCACGCGAAACTCTT
ATCCTTTCATCTGTTTCTCTTTGTGTCCTGCTCTATCTAAGCATCATCAT
TGCAACTACTACCAATTCACTTGTTCCAACCTCGTTTTGCGCTCCAGATT
CCGCGATATTCCTGTTTACGGGATCATGTTGCGATCGCACATTACATATC
CATGCACTCACTGCGCGAAAAAAACTACAGAAAAAAACAACTACAGTCGT
TTGGATGAATTTACCGTTGTAGCCGGGGTGGCGAGGGCGAGTATATACGT
CAGCTGTATAATTTCCCCTCGAAATTACAACCGAATTTCGCAGTGTTAGA
CAAGACTGTTGACGTTTCTGTAAATTAAAAAAAGACATTGCAGAGACGCT
TCTTCCCGGGAAACGACCACCAAGCTTGGGTATTTTTTTCCCAAGGGTCC
GGTCGCGCGCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7866:2952..3513+

>mRNA_L-elsbetiae_contig7866.16820.1 ID=mRNA_L-elsbetiae_contig7866.16820.1|Name=mRNA_L-elsbetiae_contig7866.16820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig7866:2952..3513+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCACGCGAAACTCTTATCCTTTCATCTGTTTCTCTTTGTGTCCTGC
TCTATCTAAGCATCATCATTGCAACTACTACCAATTCACTTGTTCCAACC
TCGTTTTGCGCTCCAGATTCCGCGATATTCCTGTTTACGGGATCATGTTG
CGATCGCACATTACATATCCATGCACTCACTGCGCGAAAAAAACTACAGA
AAAAAACAACTACAGTCGTTTGGATGAATTTACCGTTGTAGCCGGGGTGG
CGAGGGCGAGTATATACGTCAGCTGTATAATTTCCCCTCGAAATTACAAC
CGAATTTCGCAGTGTTAGATGTGCACGCGAAACTCTTATCCTTTCATCTG
TTTCTCTTTGTGTCCTGCTCTATCTAAGCATCATCATTGCAACTACTACC
AATTCACTTGTTCCAACCTCGTTTTGCGCTCCAGATTCCGCGATATTCCT
GTTTACGGGATCATGTTGCGATCGCACATTACATATCCATGCACTCACTG
CGCGAAAAAAACTACAGAAAAAAACAACTACAGTCGTTTGGATGAATTTA
CCGTTGTAGCCGGGGTGGCGAGGGCGAGTATATACGTCAGCTGTATAATT
TCCCCTCGAAATTACAACCGAATTTCGCAGTGTTAG
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