mRNA_L-elsbetiae_contig7865.16818.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7865.16818.1
Unique NamemRNA_L-elsbetiae_contig7865.16818.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7865.16818.1 vs. uniprot
Match: D7G2B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B2_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-14
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   85 RFVDPQSTLRDGYCDGGSCKVNGTPFPSSFAGKLSI 192
            R VDP STLRDGYCDGG+CKVNG PFPS FAGKLS+
Sbjct:   56 RVVDPLSTLRDGYCDGGACKVNGKPFPSRFAGKLSV 91
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7865.16818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2B2_ECTSI1.000e-1483.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7865contigL-elsbetiae_contig7865:148..342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D7G2B2
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E3VX@1,2SAVN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.0652392-CDS-L-elsbetiae_contig7865:147..3421622816870.0652392-CDS-L-elsbetiae_contig7865:147..342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7865 148..342 -
1691683875.086685-CDS-L-elsbetiae_contig7865:147..3421691683875.086685-CDS-L-elsbetiae_contig7865:147..342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7865 148..342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7865.16818.1prot_L-elsbetiae_contig7865.16818.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7865 148..342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7865.16818.1

>prot_L-elsbetiae_contig7865.16818.1 ID=prot_L-elsbetiae_contig7865.16818.1|Name=mRNA_L-elsbetiae_contig7865.16818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MFLSLCLLLGGNCDFTSCHSPECRGGGCRFVDPQSTLRDGYCDGGSCKVN
GTPFPSSFAGKLSI*
back to top

mRNA from alignment at L-elsbetiae_contig7865:148..342-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7865.16818.1 ID=mRNA_L-elsbetiae_contig7865.16818.1|Name=mRNA_L-elsbetiae_contig7865.16818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=195bp|location=Sequence derived from alignment at L-elsbetiae_contig7865:148..342- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCTGTCGCTGTGCTTGTTACTAGGCGGTAACTGTGACTTCACCTC
CTGCCACAGCCCTGAATGCCGCGGGGGCGGCTGCCGCTTCGTAGACCCCC
AGAGCACCCTGCGCGACGGCTACTGCGACGGAGGCTCCTGCAAGGTCAAT
GGCACACCTTTCCCCTCGAGCTTTGCCGGGAAGCTCAGTATCTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7865:148..342-

>mRNA_L-elsbetiae_contig7865.16818.1 ID=mRNA_L-elsbetiae_contig7865.16818.1|Name=mRNA_L-elsbetiae_contig7865.16818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig7865:148..342- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCTGTCGCTGTGCTTGTTACTAGGCGGTAACTGTGACTTCACCTC
CTGCCACAGCCCTGAATGCCGCGGGGGCGGCTGCCGCTTCGTAGACCCCC
AGAGCACCCTGCGCGACGGCTACTGCGACGGAGGCTCCTGCAAGGTCAAT
GGCACACCTTTCCCCTCGAGCTTTGCCGGGAAGCTCAGTATCTGAATGTT
TCTGTCGCTGTGCTTGTTACTAGGCGGTAACTGTGACTTCACCTCCTGCC
ACAGCCCTGAATGCCGCGGGGGCGGCTGCCGCTTCGTAGACCCCCAGAGC
ACCCTGCGCGACGGCTACTGCGACGGAGGCTCCTGCAAGGTCAATGGCAC
ACCTTTCCCCTCGAGCTTTGCCGGGAAGCTCAGTATCTGA
back to top