mRNA_L-elsbetiae_contig7864.16817.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7864.16817.1
Unique NamemRNA_L-elsbetiae_contig7864.16817.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.900e-18
Identity = 130/457 (28.45%), Postives = 177/457 (38.73%), Query Frame = 3
Query:  456 TALHSAADAGEKDRVQELLLAGADVNALDGEGRTALHVAAERGGDDGVVRALSSAGADATLRHGPLSLSALGESTSFGWLDIMRVLIEHGVDLNVACRDGLTALHISILTSNVCAVDMLVEAGADIEARDGCGLAPLHIAASRNGNNTDVLRCLLARXXXXXXXXXXXXXXXXXXXVSIDDSPSTVDKVQALLDAGVSIDNRDHA-GRSALDYAALAGNAGVLSAMIEHDVDVTAVAHTGGAASGFXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDKGLNCLHFAAGIADANVMQAMLRHAGGADGLGRMDLESALLLATTGPGINEKPIAAVVDLLLRWGADERAVSNANRR---LIGKNAPQDPATQKDAERVRELLRSAPKDRAWRRRGFLVVCRA-FPG-------KVRLKPGSGPPLPSRRCSRPRLVATDDAGVSEWAGVVGRLLWLDDGV 1790
            TALH AA   E D V  L   GA  ++++ +G T L +AA  G +    +AL  AGADA+ +    + SAL  +   G+ D++RV IEH +D+N++  DG TALH ++    V                   G  PLH+ A          R   A                                 QALLDAG  +  R +  G S+                  H  DV A  + G  A                               +  G   LH A+         A+LRH G + G      ++ L L     G      A +VDLLLR GADE AVS        ++     +  +  +D +RVR+LL  AP DRAWRRRGFL++ RA +PG       +    P +G    +R    P     D      WAGVV  L+   DGV
Sbjct:  376 TALHIAAIEDEADMVLLLCSKGAGKDSINSQGSTPLQMAAGEG-NVAATQALLDAGADASSQSEGEASSALDCAVCQGYTDVVRVKIEHEIDVNISDVDGKTALHHAVAAGKV-----------------EMGCTPLHLVAMAG-------RAAAA---------------------------------QALLDAGADVALRQNGVGLSSXXXXXXXXXXXXXXXXXXHGGDVNAKVNNGITA------LRVASAFDKAPAIDVLTEAGANIEAQANGSTPLHVASQEGRLAAGIALLRH-GASVGKKNAAAQTPLHLVAAKAG--SPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQAPAAGVAKRTRSSEEPSRAEID------WAGVVSMLM--GDGV 757          
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.550e-16
Identity = 118/478 (24.69%), Postives = 181/478 (37.87%), Query Frame = 3
Query:  525 DVNALDGEGRTALHVAAERGGDDGVVRALSSAGADATLRHGPLSLSA---LGESTSFGWLDIMRVLIEHGVDLNVACRDGLTALHISILTSNVCAVDMLVEAGADIEARDGCGLAPLHIA---------ASRNGNNTDVLRCLLARXXXXXXXXXXXXXXXXXXXVSIDDSPSTVDKVQALLDAGVSIDNRDHAGRSALDYAALAGNAGVLSAMIEHDVDVTAVAHTGGAASGFXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDKGLNCLHFAAGIADANVMQAMLRHAGGADGLGRMDLESALLLATTGPGINEKPIAAVVDLLLRWGADERAVS---NANRRLIGKNAPQDPATQKDAERVRELLRSAPKDRAWRRRGFLVVCRAFPGKVRLKPGSGPPLPSRRCSRPRLVATDDAGVSEWAG--------------------------------VVGRLLWL-DDGVFRTVLEYV 1814
            D +AL  +GRT L + AE G +D  V  L  AGAD          SA   L     F    IM VLI+HGVD+N    +  +ALH +    ++  +D+L+ AGA IEA D     PL +A            +G         L +                     ++     +  ++ LL  G ++D R   G + L  +    +  + + ++ H  D       G  A                               ++ G      A      +VM+ +LR A       R D   + +  T             +DLLLRWGADE AV    N    +  +N      +  + + V+++ + AP+D+ WR+RG+LV+CRAFP  VRLK  S    P+      R V         W+G                                +V +++ L +DGVFRT++E+V
Sbjct:  401 DDDALTAKGRTPLGLTAEFGCEDATV-VLLDAGADVKAPANSADGSAAPSLATLNDFNADGIMNVLIQHGVDVNGKNNEEFSALHRAAYHDDIDCIDVLISAGAIIEATDNHKSMPLAVAFREAVDRGKGDNSGAGEFAAMIALLKHGAYPNIGNKGKGYSNYLLYYLERCECPIFVLRELLAVGPNLDVRADDGYTPLTVSQ--DHPELFTELLLHGADTNVQTKRGATA-----LHKAAENNNGVCIEALTSAGTSTSIKDNDGRTPFQLATICHSRSVMRMLLRSAHD-----RCDSRDSAMATT-------------IDLLLRWGADENAVDSLGNTPLTVWRENESTYTLSWANKQSVKKIFKRAPRDKRWRQRGWLVLCRAFPNSVRLKADSDGTCPAAG----RSVRARSVRAGSWSGSSSVPPFGEARGGPVGPLPREKHGVIAGGLSALVAKVVGLHEDGVFRTIMEFV 848          
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Match: A0A6H5K8F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 8.500e-15
Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  456 TALHSAADAGEKDRVQELLLAGADVNALDGEGRTALHVAAERGGDDGVVRALSSAGADATLRHGPLSLSALGESTSFGWLDIMRVLIEHGVD--------LNVACRD--GLTALHISILTSNVCAVDMLVEAGADIEARDGCGLAPLHIAA 878
            T LH AA  G    +  LLL  A+VNALDGE    LHV AE+G     V AL SA A+ +LR G   LSA+  +  FG +D+MRVLI+HG+D         +V   D  G T LH+++ +++V  +  L+  GAD    +G  L+ LH+AA
Sbjct:   85 TPLHIAASLGHHSILTLLLLQEAEVNALDGEDSAPLHVEAEQG-SLAAVEALVSAHANLSLRFGDDDLSAMDRAAYFGHVDVMRVLIQHGIDQSDAGATGADVGAEDCGGDTPLHLAVRSASVDTMAALLRHGADANRVNGDQLSALHLAA 234          
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 5.100e-14
Identity = 128/443 (28.89%), Postives = 178/443 (40.18%), Query Frame = 3
Query:  615 SAGADATLRHGPLSLSALGESTSFGWLDIMRVLIEHGVDLNVACRDGLTALHISILTSNVCAVDMLVEAGADIEARDGCGLAPLHIAASR--------NGNNTD--VLRCLLARXXXXXXXXXXXXXXXXXXXVSIDDSPSTVDKVQALLDAGVSIDNRDHAGRSAL----DYAALAGNAGVLSAMIEHDVDVTAVAHTGGAASGFXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDKGLNCLHFAAGIADANVMQAMLRHAGGADGLGRMDLESALLLATTGPGINEKPIAAVVDLLLRWGADERAVSNANRRLIG---KNAPQDPATQKDAERVRELLRSAPKDRAWRRRGFLVVCRAFPGKVRLKPGSGPPLP-SRRCSRPRLVATDDAG-------VSEWAGV-----------------VGRLLWL-DDGVFRTVLEYV 1814
            +A AD T     LSL+ L E       D M++LI+HG D+N    DG TALH + + + V  VD+L+ AGA IEA D     PL +A           NG   D   +  LL                       I      +   + LL  G ++D RD  G + L    D+  L       S ++ H  D       G  A                  XXXXXXXXXXXX                                        +A    T+G    +  +A  +DLLLRWGADE AV +A R  +    +N      +  + + V+++ + AP+D+AWRRRG+LV+CRAFP +VRLK  +    P + R  R R V             V E  GV                 V +++ L +DGVF T++E+V
Sbjct:  476 NAPADHTDGSAALSLATLSEYVD----DTMKILIQHGADVNARNTDGFTALHRAAMYNEVDGVDLLISAGAIIEALDNHKSTPLAVAFREAVYRWKKYNGGAGDFAAMVSLLKHGADPNIGNIQEGCPNSLLWYFIR-CGCPISVFRELLAVGPNLDVRDDEGCTLLLLSQDHPEL------FSELLLHGADTNVQTKRGKTALHKAAQDDNGVCIEALISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHDQCTSG----DSAMATTMDLLLRWGADENAVDSAGRTPVTVWRENESMYTLSWANKQSVKKMFQRAPRDKAWRRRGWLVLCRAFPNRVRLKEDNAGTCPRAGRSLRARRVGAGSGSGSSSVPPVGEAGGVPVGTLPPEKMAGGLSALVAKVVGLHEDGVFMTIMEFV 903          
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.850e-13
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 3
Query: 1449 VVDLLLRWGADER---AVSNANRRLIGKNAPQDPATQKDAERVRELLRSAPKDRAWRRRGFLVVCRAFPGKVRLKPGSGPPLPSRRC----SRPRLV-------------ATDDAGVSEWAGVVGRLLWLDDGVFRTVLEYV 1814
            VVDLLLRW ADE    A  +    ++G   P+  +   + +RV +LL+ AP+DRAWRRRG LV+CRA P ++ L+  +     S       SR +LV             A D     EW+ +V R+L LD+G+FRT++ Y+
Sbjct:  258 VVDLLLRWNADETDDDAYGHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL 399          
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.840e-13
Identity = 55/141 (39.01%), Postives = 85/141 (60.28%), Query Frame = 3
Query: 1443 AAVVDLLLRWGADERAVSNANRR---LIGKNAPQDPATQKDAERVRELLRSAPKDRAWRRRGFLVVCRAFPGKV---RLKPGSGPPLPSRRC------SRPRLVA----TDDAGVSEWAGVVGRLLWL-DDGVFRTVLEYV 1814
            A VV+ LLR GADE   +    +   +IG++  ++    +D ERVRELL +AP DRAWRRRG+L++CRA P +V   R+  G+     +RR       +R R +A     D++    WA VV +++ L ++G+FRT++EY+
Sbjct:  260 AEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARGIAGESTVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400          
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.400e-12
Identity = 80/262 (30.53%), Postives = 115/262 (43.89%), Query Frame = 3
Query: 1056 NRDHAGR--SALDYAALAGNAGVLSAMIEHDVDVTAVAHTGGAASGFXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDKGLNCLHFAAGI---ADANVMQAMLRHAGGADGLGRMDLESALLLATTGPGINEKPIAAVVDLLLRWGADERAVSNANRRL---IGKNAPQDPATQKDAERVRELLRSAPKDRAWRRRGFLVVCRAFPGKVRLKPGSGPPLPSRRCSRPRLVATDDAGVSEWAGVVGRLLWL-DDGVFRTVLEYV 1814
            NR +  R  SALD  A  G+   +  +IEH  DV A  + G AA                                + G   LH AA      +A  +  +L+H  GAD +    +    +L        ++ I  VVDLLLRWGADE  V+    R    IG   P++    ++ E VR+LL +AP DRAWRRR  LV+CRA P K++L         S R +R                +  R+L L ++G+FRT++ ++
Sbjct:  153 NRRYGDREISALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAA-----LHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKH--GAD-VNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQLS--------SDRIAR----------------LEARVLGLVEEGIFRTIVRFI 382          
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Match: A0A6J2PJN0_COTGO (cyclin-dependent kinase 4 inhibitor C isoform X1 n=1 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2PJN0_COTGO)

HSP 1 Score: 73.2 bits (178), Expect = 2.210e-11
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  462 LHSAADAGEKDRVQELLLAGADVNALDGEGRTALHVAAERGGDDGVVRALSSAGADATLRHGPLSLSALGESTSFGWLDIMRVLIEHGVDLNVACRDGLTALHISILTSNVCAVDMLVEAGADIEARDGCG 854
            L +A+  G+  +V  LL  GADVN L+   RTAL V     G+  VV AL  AGAD ++R   L+L+ + ++   G++D +R+L++HG D+N+    G   LH++ +  N+ A  +L+E  A+ +  +G G
Sbjct:    5 LCNASARGDLHQVLLLLQNGADVNGLNTSNRTALQVV--NFGNVKVVEALLEAGADTSVRDPVLNLTVMHDAARAGYIDSVRMLMDHGADINLTDDVGNLPLHLAAMEGNLEATQLLIERTANPQTPNGQG 133          
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Match: D7G0W1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.090e-11
Identity = 59/154 (38.31%), Postives = 79/154 (51.30%), Query Frame = 3
Query:  447 GCGTALHSAADAGEKDRVQELLLAGADVNALDGEGRTALHVAAERGGDD--GVVRALSSAGADATLRHGPLSLSALGESTSFGWLDIMRVLIEHGVDLNVACRDGLTALHISILTSNVCAVDMLVEAGADIEAR---DGCGLAPLHIAASRNGN 893
            GC T L  AA    +  +  LL  G D  +   +G T L  A E   +D  G+  AL +AGAD  +R G    S L  S     +D+ R +++ G     +  DG TALH +    N  AVD+LVE GAD+EA+   DGC   PLH+AA + GN
Sbjct:  154 GC-TPLRVAAGCASEAALLALLRHGDDKESTGVDGLTPLQDAME---NDLWGIATALMAAGADVNVRDGSNGYSPLDCSVRSDGMDLTRQVLQRGAIATASASDGYTALHWAGWNMNASAVDLLVEVGADLEAKVALDGC--TPLHLAARQAGN 301          
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.170e-10
Identity = 98/345 (28.41%), Postives = 139/345 (40.29%), Query Frame = 3
Query:  663 ALGESTSFGWLDIMRV----LIEHGVDLNVACRDGLTALHISILTSNVCAVDMLVEAGADIEARDGCGLAPLHIAASRNGNNTDVLRCLLARXXXXXXXXXXXXXXXXXXXVSIDDSPSTVDKVQALLDAGVSIDNRDHAGRSALDYAALAGNAGVLSAMIEHDVDVT--AVAHTGGAASGFXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDKGLNCLHFAAGIADANVMQAMLRHAGGADGLGRMDL--ESALLLATTGPGINEKPIAAVVDLLLRWGADERAVSNANR---RLIGKNAPQD--PATQKDAERVRELLRSAPKDRAWRRRGFLVVCRAFPGKVR 1658
            AL E+   G +D   V    ++     L  A  D    LH++        V  L+  GA     D  G  PLH+A   NG+ + V   L A                          P T  + +        I NR +   S LD AA  G+A VL A+++H VDV      +T    +                               D  +N  H AA         A+ +H    +     D+  E+ L++A    G   + + A+VD+LLR GADE A++   R    ++G +      P  ++D ERVR+LL +AP DRAWRRRGFLV+CRAF  K R
Sbjct:    4 ALEEAVDSGHVDESAVEPILVVAKVASLQYASVDSSDQLHVAASQGQEGRVATLLAGGAKKNGLDAQGRTPLHLAVE-NGHLSTVKALLAA-------------------------DPDTSVRYR--------IWNRSY---SVLDLAAQKGDACVLRAILQHGVDVNRRTDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAA--------LALYKHGSNIEA---RDIRGETPLIIAARQAG--RQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAFWIKAR 298          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7864.16817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHY9_9PHAE2.900e-1828.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN15_9PHAE4.550e-1624.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8F3_9PHAE8.500e-1541.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G751_ECTSI5.100e-1428.89Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D7G981_ECTSI2.850e-1338.03Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5KXK5_9PHAE3.840e-1339.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL4_ECTSI1.400e-1230.53Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6J2PJN0_COTGO2.210e-1135.88cyclin-dependent kinase 4 inhibitor C isoform X1 n... [more]
D7G0W1_ECTSI5.090e-1138.31Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G6X8_ECTSI1.170e-1028.41Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7864contigL-elsbetiae_contig7864:4941..7930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2e-14
Seed eggNOG ortholog2880.D7G981
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size2513
Cds size1116
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7864.16817.1prot_L-elsbetiae_contig7864.16817.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7864 6114..7229 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.990814-UTR-L-elsbetiae_contig7864:4940..56321622816869.990814-UTR-L-elsbetiae_contig7864:4940..5632Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7864 4941..5632 -
1691683875.033654-UTR-L-elsbetiae_contig7864:4940..56321691683875.033654-UTR-L-elsbetiae_contig7864:4940..5632Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7864 4941..5632 -
1622816870.0045812-UTR-L-elsbetiae_contig7864:6109..61131622816870.0045812-UTR-L-elsbetiae_contig7864:6109..6113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7864 6110..6113 -
1691683875.0575042-UTR-L-elsbetiae_contig7864:6109..61131691683875.0575042-UTR-L-elsbetiae_contig7864:6109..6113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7864 6110..6113 -
1622816870.0332105-UTR-L-elsbetiae_contig7864:7229..79301622816870.0332105-UTR-L-elsbetiae_contig7864:7229..7930Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7864 7230..7930 -
1691683875.0760164-UTR-L-elsbetiae_contig7864:7229..79301691683875.0760164-UTR-L-elsbetiae_contig7864:7229..7930Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7864 7230..7930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.018438-CDS-L-elsbetiae_contig7864:6113..72291622816870.018438-CDS-L-elsbetiae_contig7864:6113..7229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7864 6114..7229 -
1691683875.0656893-CDS-L-elsbetiae_contig7864:6113..72291691683875.0656893-CDS-L-elsbetiae_contig7864:6113..7229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7864 6114..7229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7864.16817.1

>prot_L-elsbetiae_contig7864.16817.1 ID=prot_L-elsbetiae_contig7864.16817.1|Name=mRNA_L-elsbetiae_contig7864.16817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=372bp
MRVLIEHGVDLNVACRDGLTALHISILTSNVCAVDMLVEAGADIEARDGC
GLAPLHIAASRNGNNTDVLRCLLARGGADLDALNGRGRSALQLAVSIDDS
PSTVDKVQALLDAGVSIDNRDHAGRSALDYAALAGNAGVLSAMIEHDVDV
TAVAHTGGAASGFTALHYASAGGNPEVIDVLVEAGADIAATEDKGLNCLH
FAAGIADANVMQAMLRHAGGADGLGRMDLESALLLATTGPGINEKPIAAV
VDLLLRWGADERAVSNANRRLIGKNAPQDPATQKDAERVRELLRSAPKDR
AWRRRGFLVVCRAFPGKVRLKPGSGPPLPSRRCSRPRLVATDDAGVSEWA
GVVGRLLWLDDGVFRTVLEYV*
back to top

mRNA from alignment at L-elsbetiae_contig7864:4941..7930-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7864.16817.1 ID=mRNA_L-elsbetiae_contig7864.16817.1|Name=mRNA_L-elsbetiae_contig7864.16817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2990bp|location=Sequence derived from alignment at L-elsbetiae_contig7864:4941..7930- (Laminarionema elsbetiae ELsaHSoW15)
TTTGAAGTTGACACTATTTCGTGTGTAGACTACATACTAAGTATAGAGTA GCAGCTACATACATACAGCTTGTTGTGAAACAAACGGGTGGATACACCGT TCGTTGGATGCGGGTTGCCGCCCGGACCTGTACCTGAACGCCCACACGCG TGTCATGCAACGTCATGTATCGAACGAACGAAAAGAAGGCTCCGTCGCAC CTTCATGGGGTCACATCGGGAAGTGGGCTCAGGTCGGACCCAAAAATGGC TTCTCATGGTCCAATCTAGATATTGTTCAAGGAGCAGCGAAAATCCCGGC GTGTGGATGCATACACGCATGCCTTCGGCTACTATTGCGTAGAAGAGCGG TATCTGGCCGAGAGGGGGTGGCGACTCCAATGCCGAGGGCCCCACTGGGA TACTTACCCCCCGCGATGCCGCAACGCTGTGTTTCCTTGTCCAGGCGGTT GCGGCACGGCTCTCCACTCCGCCGCCGATGCTGGGGAAAAGGACAGGGTG CAGGAGCTACTGCTCGCAGGGGCCGACGTGAACGCTCTGGATGGTGAAGG GAGAACCGCCCTTCACGTCGCGGCTGAACGGGGAGGCGACGACGGCGTGG TTCGAGCCCTGTCGTCTGCCGGAGCGGACGCCACGCTTCGCCACGGCCCA CTCAGCCTCTCCGCACTCGGCGAGTCGACCAGCTTTGGGTGGCTAGACAT CATGCGTGTGCTGATCGAACACGGGGTGGACCTAAACGTGGCGTGTCGTG ATGGCTTGACGGCTCTGCATATTTCGATCCTAACAAGCAACGTGTGTGCG GTCGATATGCTAGTGGAGGCCGGAGCAGATATCGAGGCTAGGGACGGGTG TGGCCTCGCCCCGCTCCACATCGCCGCCTCCAGGAACGGAAACAACACGG ATGTTTTGCGGTGTTTACTGGCGAGGGGGGGCGCTGATCTAGATGCGCTA AATGGCCGTGGGCGCTCCGCATTGCAGCTGGCGGTCTCTATTGACGATAG CCCGTCTACCGTGGATAAGGTGCAGGCGTTGCTAGACGCCGGCGTGAGCA TAGACAATCGAGACCATGCGGGAAGGTCCGCCCTGGACTACGCAGCCCTA GCAGGGAACGCGGGAGTGCTGTCGGCGATGATCGAGCACGATGTGGATGT TACGGCTGTTGCCCACACGGGCGGTGCCGCTAGCGGTTTCACCGCCCTAC ACTATGCGTCGGCAGGTGGCAACCCGGAAGTGATCGACGTGCTCGTCGAA GCTGGAGCTGACATCGCCGCGACCGAGGACAAGGGCTTGAACTGCCTCCA CTTCGCCGCGGGCATTGCCGACGCAAACGTCATGCAAGCCATGCTCAGAC ATGCTGGTGGCGCGGACGGTCTTGGAAGAATGGACCTGGAATCGGCGCTG CTGCTCGCTACGACCGGGCCCGGCATCAACGAGAAGCCAATCGCAGCTGT GGTGGACCTCTTGCTAAGATGGGGCGCGGACGAAAGGGCTGTCTCCAACG CCAACAGACGCTTGATCGGGAAGAACGCGCCGCAAGACCCCGCTACACAA AAGGACGCCGAACGAGTGCGAGAGCTGCTGAGAAGCGCCCCGAAAGACAG GGCTTGGCGTCGGCGGGGGTTTCTCGTTGTGTGCCGCGCTTTTCCTGGCA AGGTCCGGTTGAAGCCGGGGAGTGGCCCACCGCTACCCTCGAGAAGATGC AGTCGCCCCAGGCTGGTCGCGACGGACGACGCCGGGGTCAGCGAGTGGGC TGGCGTGGTGGGCAGGCTGTTGTGGTTGGATGACGGCGTATTCCGAACGG TTCTTGAGTACGTGTGAATCGGTAAGAAAATTTCCCTGCGTACAAGAAAA AGTGTATGTAGCATTTAAAATAAAGATTTGAACCCTTTGTGAAGCCATCG ACACTCGTCTTGTGTAATCCCCCCCACCGTTTGGAAGCCGCCGCGCCAGA CACCTTTCCCGCCAACACCCAGGGTGCCATATCGCCCAAACGTTTTTTCA AGCTGGGGATGTCGCTTTTGTCCCGGTTAAGTTTTGCCGCGAAGCAGGCC ACGGTGTGAGGGGGAACGCGCCCCCCGTGCCCACGAGTTTGCACCACGCG TGTGGCTCTTCTGTTCTATATTGGGCGCTCTTCCCATCGCGCGCTCCGGA TACGCTTGGGGAAACCTGCATTGAGTGTGCGTTGAGGCTCAGTTTCAGCT GTGCGTCGTAACTAAAATGCCTGCCTGCTGCCACTGACTGACGGACGACC ATATTATTTGCCCCTCTTCCCGTATCGCTTACCCCCCGTTCACAAAAGAA GCAGGCATTCACGAATACGCGCTGGTGGTGGTATATCCTGGTTTCCGGAG TTGTTTGTCGAGCTCGTGAAAAGCAGCGAGTATTTAGTTATCAAGGGCTA AATAACCCCAAGAAATTGCTGCTTGAATCGTCGTGAAATTGGCCGGTTTC AGAAATCACAGGGGCTATATGGCGAGATATCACTGGAATTCGCGATCGTC GAGGCAAACCTCAGTTGATGTGTCGCATATCTTTTTCAGTGCCGGTGGTG CGGTTTGTCGTCATCCTTTTTTTTCACCGTCATAGACATCGTCCTTTGTT CGCTGTTGTTGTGCCGCTTGGAGTTCGAGCGGCACAGCAAGTCGAGTGAT AAAGTTGTCCACGCATGCATATCCCAAGGATACGAGCGAGCTCTACTCAG TGCGATCGATTGTTTTTGAACTTTTTTCGGACTGATGACTTTAATTGCTT CTCTCTCCAATGTCTGGACCGAGATTGAGTTTGTTTGGGGGTGTATTTCT TCCGGTATTAAGTTTCAGCGACAACCTTGTGCGATGAGTCTGTCCTGACG ATGGCATGTTTGGCTCAACTAGTTCAATAGGGAAGGGATGTCAACAATCA TGCGGAGCTTGGAGTTTTGTAGGCAGCGCCTTGGCCATGGCTGATGAACA CCGACGTTAGGCCCATATAACCCTGCTTCCTTGCTGCACC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7864:4941..7930-

>mRNA_L-elsbetiae_contig7864.16817.1 ID=mRNA_L-elsbetiae_contig7864.16817.1|Name=mRNA_L-elsbetiae_contig7864.16817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2232bp|location=Sequence derived from alignment at L-elsbetiae_contig7864:4941..7930- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGTGCTGATCGAACACGGGGTGGACCTAAACGTGGCGTGTCGTGA
TGGCTTGACGGCTCTGCATATTTCGATCCTAACAAGCAACGTGTGTGCGG
TCGATATGCTAGTGGAGGCCGGAGCAGATATCGAGGCTAGGGACGGGTGT
GGCCTCGCCCCGCTCCACATCGCCGCCTCCAGGAACGGAAACAACACGGA
TGTTTTGCGGTGTTTACTGGCGAGGGGGGGCGCTGATCTAGATGCGCTAA
ATGGCCGTGGGCGCTCCGCATTGCAGCTGGCGGTCTCTATTGACGATAGC
CCGTCTACCGTGGATAAGGTGCAGGCGTTGCTAGACGCCGGCGTGAGCAT
AGACAATCGAGACCATGCGGGAAGGTCCGCCCTGGACTACGCAGCCCTAG
CAGGGAACGCGGGAGTGCTGTCGGCGATGATCGAGCACGATGTGGATGTT
ACGGCTGTTGCCCACACGGGCGGTGCCGCTAGCGGTTTCACCGCCCTACA
CTATGCGTCGGCAGGTGGCAACCCGGAAGTGATCGACGTGCTCGTCGAAG
CTGGAGCTGACATCGCCGCGACCGAGGACAAGGGCTTGAACTGCCTCCAC
TTCGCCGCGGGCATTGCCGACGCAAACGTCATGCAAGCCATGCTCAGACA
TGCTGGTGGCGCGGACGGTCTTGGAAGAATGGACCTGGAATCGGCGCTGC
TGCTCGCTACGACCGGGCCCGGCATCAACGAGAAGCCAATCGCAGCTGTG
GTGGACCTCTTGCTAAGATGGGGCGCGGACGAAAGGGCTGTCTCCAACGC
CAACAGACGCTTGATCGGGAAGAACGCGCCGCAAGACCCCGCTACACAAA
AGGACGCCGAACGAGTGCGAGAGCTGCTGAGAAGCGCCCCGAAAGACAGG
GCTTGGCGTCGGCGGGGGTTTCTCGTTGTGTGCCGCGCTTTTCCTGGCAA
GGTCCGGTTGAAGCCGGGGAGTGGCCCACCGCTACCCTCGAGAAGATGCA
GTCGCCCCAGGCTGGTCGCGACGGACGACGCCGGGGTCAGCGAGTGGGCT
GGCGTGGTGGGCAGGCTGTTGTGGTTGGATGACGGCGTATTCCGAACGGT
TCTTGAGTACGTGTGAATGCGTGTGCTGATCGAACACGGGGTGGACCTAA
ACGTGGCGTGTCGTGATGGCTTGACGGCTCTGCATATTTCGATCCTAACA
AGCAACGTGTGTGCGGTCGATATGCTAGTGGAGGCCGGAGCAGATATCGA
GGCTAGGGACGGGTGTGGCCTCGCCCCGCTCCACATCGCCGCCTCCAGGA
ACGGAAACAACACGGATGTTTTGCGGTGTTTACTGGCGAGGGGGGGCGCT
GATCTAGATGCGCTAAATGGCCGTGGGCGCTCCGCATTGCAGCTGGCGGT
CTCTATTGACGATAGCCCGTCTACCGTGGATAAGGTGCAGGCGTTGCTAG
ACGCCGGCGTGAGCATAGACAATCGAGACCATGCGGGAAGGTCCGCCCTG
GACTACGCAGCCCTAGCAGGGAACGCGGGAGTGCTGTCGGCGATGATCGA
GCACGATGTGGATGTTACGGCTGTTGCCCACACGGGCGGTGCCGCTAGCG
GTTTCACCGCCCTACACTATGCGTCGGCAGGTGGCAACCCGGAAGTGATC
GACGTGCTCGTCGAAGCTGGAGCTGACATCGCCGCGACCGAGGACAAGGG
CTTGAACTGCCTCCACTTCGCCGCGGGCATTGCCGACGCAAACGTCATGC
AAGCCATGCTCAGACATGCTGGTGGCGCGGACGGTCTTGGAAGAATGGAC
CTGGAATCGGCGCTGCTGCTCGCTACGACCGGGCCCGGCATCAACGAGAA
GCCAATCGCAGCTGTGGTGGACCTCTTGCTAAGATGGGGCGCGGACGAAA
GGGCTGTCTCCAACGCCAACAGACGCTTGATCGGGAAGAACGCGCCGCAA
GACCCCGCTACACAAAAGGACGCCGAACGAGTGCGAGAGCTGCTGAGAAG
CGCCCCGAAAGACAGGGCTTGGCGTCGGCGGGGGTTTCTCGTTGTGTGCC
GCGCTTTTCCTGGCAAGGTCCGGTTGAAGCCGGGGAGTGGCCCACCGCTA
CCCTCGAGAAGATGCAGTCGCCCCAGGCTGGTCGCGACGGACGACGCCGG
GGTCAGCGAGTGGGCTGGCGTGGTGGGCAGGCTGTTGTGGTTGGATGACG
GCGTATTCCGAACGGTTCTTGAGTACGTGTGA
back to top