mRNA_L-elsbetiae_contig7863.16816.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7863.16816.1
Unique NamemRNA_L-elsbetiae_contig7863.16816.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7863.16816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7863contigL-elsbetiae_contig7863:8795..9280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7863.16816.1prot_L-elsbetiae_contig7863.16816.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7863 8966..9274 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.8491354-UTR-L-elsbetiae_contig7863:8794..89651622816869.8491354-UTR-L-elsbetiae_contig7863:8794..8965Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7863 8795..8965 +
1691683874.9511404-UTR-L-elsbetiae_contig7863:8794..89651691683874.9511404-UTR-L-elsbetiae_contig7863:8794..8965Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7863 8795..8965 +
1622816869.8756425-UTR-L-elsbetiae_contig7863:9274..92801622816869.8756425-UTR-L-elsbetiae_contig7863:9274..9280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7863 9275..9280 +
1691683874.9781594-UTR-L-elsbetiae_contig7863:9274..92801691683874.9781594-UTR-L-elsbetiae_contig7863:9274..9280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7863 9275..9280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.8609846-CDS-L-elsbetiae_contig7863:8965..92741622816869.8609846-CDS-L-elsbetiae_contig7863:8965..9274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7863 8966..9274 +
1691683874.9658325-CDS-L-elsbetiae_contig7863:8965..92741691683874.9658325-CDS-L-elsbetiae_contig7863:8965..9274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7863 8966..9274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7863.16816.1

>prot_L-elsbetiae_contig7863.16816.1 ID=prot_L-elsbetiae_contig7863.16816.1|Name=mRNA_L-elsbetiae_contig7863.16816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MGTTIHFPCTHCLAAGRDAKKNEKTDWDKSCDLSRLCQENKKIVRTSRGF
ALHRHARKTKRRQGSFVVCTWYLIPNPCQHGPSMCWHHIISTKNKNLYGY
SI*
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mRNA from alignment at L-elsbetiae_contig7863:8795..9280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7863.16816.1 ID=mRNA_L-elsbetiae_contig7863.16816.1|Name=mRNA_L-elsbetiae_contig7863.16816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig7863:8795..9280+ (Laminarionema elsbetiae ELsaHSoW15)
TATCGACTTGCACTATAACTCACGCACACAATTCACATGTCCTATTCTCT
ACGGCAAAAAACACGCTCGACACACAACCTACTTTGCACCGCTCACTCAA
GCAACCTCTCGGAAATAAGCGGAATATATATGTAGACTAGTCCAAACAGA
ATTCGGCTCGAACGCCGTCGTATGGGCACCACCATCCATTTCCCATGCAC
TCACTGCCTAGCAGCAGGTCGTGATGCCAAAAAAAATGAAAAGACGGACT
GGGACAAGTCTTGTGATCTATCTCGCCTTTGCCAAGAGAACAAAAAGATC
GTGCGTACATCACGTGGGTTCGCTCTCCACAGACACGCGCGGAAAACCAA
AAGGCGGCAAGGAAGCTTCGTTGTATGTACGTGGTACTTGATTCCGAACC
CGTGTCAGCATGGGCCTAGTATGTGTTGGCACCACATAATTTCGACGAAG
AACAAAAATTTGTATGGCTATTCCATTTAGACCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7863:8795..9280+

>mRNA_L-elsbetiae_contig7863.16816.1 ID=mRNA_L-elsbetiae_contig7863.16816.1|Name=mRNA_L-elsbetiae_contig7863.16816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig7863:8795..9280+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCACCACCATCCATTTCCCATGCACTCACTGCCTAGCAGCAGGTCG
TGATGCCAAAAAAAATGAAAAGACGGACTGGGACAAGTCTTGTGATCTAT
CTCGCCTTTGCCAAGAGAACAAAAAGATCGTGCGTACATCACGTGGGTTC
GCTCTCCACAGACACGCGCGGAAAACCAAAAGGCGGCAAGGAAGCTTCGT
TGTATGTACGTGGTACTTGATTCCGAACCCGTGTCAGCATGGGCCTAGTA
TGTGTTGGCACCACATAATTTCGACGAAGAACAAAAATTTGTATGGCTAT
TCCATTTAGATGGGCACCACCATCCATTTCCCATGCACTCACTGCCTAGC
AGCAGGTCGTGATGCCAAAAAAAATGAAAAGACGGACTGGGACAAGTCTT
GTGATCTATCTCGCCTTTGCCAAGAGAACAAAAAGATCGTGCGTACATCA
CGTGGGTTCGCTCTCCACAGACACGCGCGGAAAACCAAAAGGCGGCAAGG
AAGCTTCGTTGTATGTACGTGGTACTTGATTCCGAACCCGTGTCAGCATG
GGCCTAGTATGTGTTGGCACCACATAATTTCGACGAAGAACAAAAATTTG
TATGGCTATTCCATTTAG
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