mRNA_L-elsbetiae_contig10118.168.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10118.168.1
Unique NamemRNA_L-elsbetiae_contig10118.168.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10118.168.1 vs. uniprot
Match: A0A6H5L694_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L694_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.100e-17
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 2 
Query:   71 KAPSLEDVTWRDMRVGQESARDVFERVQRHGWPAMPAFSFGGILGGEASISDAINSASG 247
            K  SL+ VTWRDMRVG +SAR +F+RVQ   WP+MP+FSFGGILGGEA I+DA+N+ SG
Sbjct:  163 KVHSLDGVTWRDMRVGNQSARALFDRVQGRPWPSMPSFSFGGILGGEAGITDAMNTTSG 221
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BLAST of mRNA_L-elsbetiae_contig10118.168.1 vs. uniprot
Match: D8LQY6_ECTSI (Ap4A phosphorylase II n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY6_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.750e-11
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 2 
Query:  119 QESARDVFERVQRHGWPAMPAFSFGGILGGEASISDAINSASG 247
            ++SARD+F+RVQ   WPAMP+FSFGGILGGEA I+DA+N+ASG
Sbjct:   49 KQSARDIFDRVQGRRWPAMPSFSFGGILGGEAGITDAMNTASG 91
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10118.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L694_9PHAE1.100e-1767.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQY6_ECTSI1.750e-1172.09Ap4A phosphorylase II n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10118contigL-elsbetiae_contig10118:761..6976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size332
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10118.168.1prot_L-elsbetiae_contig10118.168.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10118 777..6976 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815243.4574172-UTR-L-elsbetiae_contig10118:760..7761622815243.4574172-UTR-L-elsbetiae_contig10118:760..776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10118 761..776 +
1691682791.9480448-UTR-L-elsbetiae_contig10118:760..7761691682791.9480448-UTR-L-elsbetiae_contig10118:760..776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10118 761..776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815243.4687176-CDS-L-elsbetiae_contig10118:776..8331622815243.4687176-CDS-L-elsbetiae_contig10118:776..833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10118 777..833 +
1691682791.9565077-CDS-L-elsbetiae_contig10118:776..8331691682791.9565077-CDS-L-elsbetiae_contig10118:776..833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10118 777..833 +
1622815243.4815102-CDS-L-elsbetiae_contig10118:6011..60591622815243.4815102-CDS-L-elsbetiae_contig10118:6011..6059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10118 6012..6059 +
1691682791.9643323-CDS-L-elsbetiae_contig10118:6011..60591691682791.9643323-CDS-L-elsbetiae_contig10118:6011..6059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10118 6012..6059 +
1622815243.4916894-CDS-L-elsbetiae_contig10118:6766..69761622815243.4916894-CDS-L-elsbetiae_contig10118:6766..6976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10118 6767..6976 +
1691682791.973893-CDS-L-elsbetiae_contig10118:6766..69761691682791.973893-CDS-L-elsbetiae_contig10118:6766..6976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10118 6767..6976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10118.168.1

>prot_L-elsbetiae_contig10118.168.1 ID=prot_L-elsbetiae_contig10118.168.1|Name=mRNA_L-elsbetiae_contig10118.168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MADRDGESGQGKEEHGVNKAPSLEDVTWRDMRVGQESARDVFERVQRHGW
PAMPAFSFGGILGGEASISDAINSASGGGVAGRGGRGGDGGGDGGGDGIA
NYPWW
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mRNA from alignment at L-elsbetiae_contig10118:761..6976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10118.168.1 ID=mRNA_L-elsbetiae_contig10118.168.1|Name=mRNA_L-elsbetiae_contig10118.168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6216bp|location=Sequence derived from alignment at L-elsbetiae_contig10118:761..6976+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGGGCAGGAGGCATGGCAGATAGAGATGGCGAAAGCGGGCAGGGAA
AAGAAGAACATGGGGTAAACAAGGTCAGCGCATTATTAGCCACTCCTGAG
TGTGTGTTCACGTGATGTACCCTCTACACAGCAGCTCAGTAGACTATTGT
ATATTTTGTCGTTGGAAGCCATTTGTTCCGCTACCTTATCTGCTGTCGTC
TAGAGGTCTAGATAGATACACTGCTACAGGAGCGGTCTGTACTCGTAGGG
AAGTCGATATTTTTCTTCGCACCTACGAGTATCAGCCGTTACACCATCTG
AAAAATCTTATCCCGTAACGAGTGTGGTTTACGTGTGTGTGTGTGTCTCC
TCCGTCTCCCAGTGGCGGGGGGAGTCACCCACACACACACCACTTTGATA
GACTGCACGGTAGACTTGGGGGATAAAAGGTACAGCAGTACAGGAGTTTT
CATATGTACTGGTGCGGGTGTGAATCCCTAATCCATGGTGCTTCCTGTGC
ATTCATCCACAGGAAACATACTGCAGCGATGATTCGAGATACTTGGCAAT
CGTCTAGCTAGATATTGCGTATCTTAGACTAAGATGTTAGATGCAACAGC
TTGATTCCAGGAGCAGATGACGCATGATGCATCCTGGGCGCAAGGCCTGT
GTATTGTAGCCCCCCTTTCTGTATGGAGTGTGCGTTTGCCTTCACAGCTA
CATGTAGTCAATGTCATAAGTATGAGCAGAGGTTTCTGAGCCTTGTTGAA
TCAGAGCAGCACCGTTGCCGTGGAACAACCCCCGACCAGCGCTTAAAATA
GCTGTTGCGGAGTTGCGGAGGTGCACATATTATAGAGATATTGGAGGTTT
CCGCAACATAGGAAAATTTGATGTTGCGGCTTGCCGCAACATCAATTTGT
AGGCCCGCAACACTTTCGCCGCAGGCGAAAAATATTGTTGCGGGGTGTCT
CCCTCGCCGTAGGCACGAAACATTTTTACCCCTTTTTCTCGCCGGCGAGA
AAAACATTTAGACCTCTGAACTGTTTTTCATCACAATACTTGTCATCAAA
CTACCCAAAAGCGCCACGAATGCTGCTCCACACAGCTGCTTAACACTAAA
AAGCCACCCCTGCGTCACATGAAACGGCCACGTGCGCCTTCCCGGGCCCC
CCTTCGAGGAGGTACCCTATTTTTCAATACACGGGGCCCCCTCAGCCCGC
GCTACGCGGTACCACGCTTCATTTGAGGTACGCCATAGCAGCGCACCTAC
CGTAGGCATGTCGCTCGGTTCGGAAGACATGGGGAGTCCGATTTCGGGCG
ATCAAGGTGGTTGCGAGCAGGACGGGGAAAACTATTGTTGTGAATGCGAT
GCGCCCGTCCACGGTCGATTCTACTTTCCGACACCGACGGTCGATTCTAT
GTAGTGGGCGACAGGACAGTAAATTTGAGGATATTCCCTACTACGTATTG
AAGTATTATTCCCTTTCCCTCACAAGAAAAGGCACTTATCCCCAAAAAAA
TCTCGCCTCCGGCGGCCCTCTGGGGCCCTCCGGGGGAACACGCCTTCGGC
GTCGTGTTGCGGAAGCCGCAACAGCCGCTGCGCGGCTATTTCAAGCGCTG
CCCCCGACAGACAGGTCAAAGACAAGTCTGCTACATACTTCTTTATTTCA
CAAGGTCTTGGGCGCTCGCGCGCCCCCGCTTATTGTAAGCGAATCCAAGG
TATTGTAGAGTGTAATGTAATTGAGCAGGACGGATGCGTGAATGGTGGAG
TTCATTTATATGTATGAGTTGGAGGATGTTTACATGTTCCATTTAAATAG
TTAACCCTTTTAGTACGGGAGGTCCCAGAGAACCAAAGTTATCAGACCAA
AATTATCGATCTGTTCTAGATGCCCGCTGACTGGTCGAGAATGACAGTCC
CTGCGCAAGACACCAGCAAAGACCAGCTGCAGGGCCCCACACCAATTTGG
CGACACTTCCTATACTAAATAGCAGTCAAACTCTGTTAAACGTTTGGCGA
CACTTTCAATACTCAATCCAAGTCGAACTTTTTTGGCGTACCAGACAATA
CAGATTTCTTTGTCTCAGAGACATGAGATGGACCCTGGGCTGTGCACGCG
CAGCAGCCCTCACAACGCATCATGCAGCGTGTGGCGAGCGAAGCAACCCG
CTCTAGGCTCAGCATGCGGTGGTTTTCGAGAGTACAGCGAAGCTGTGTGT
GCGTGCTGTCAGCTCAAAGGCTCAAATCGCTGGGGGCGCCGCGGAAAGTA
CAGAGTTTGGGATCGCAGACACGTTGATTTTTTCTTGATTTTGAGATATC
GACGACAACTCCGTTGTGTCCACAGCACTGCTGTGGAGCTGTGAGTAGGC
CAGATACGGTAGGTAAAGTGTCTATACAACTCGGCAGGGTACTACTCCCA
GGCCTTCGTACGGGATACCAAGACCGCCCGTGCACCCCATTGTCATAAAA
CAGTGACCAAAGTTAGGTGTCGCCAAATCGTCGCCAAACGCGCTTCCAGT
ACTATAAGGGTTACATTGGGAGTGAAAACTACTGTGTACATACATACCGT
CTTCAGCACTTGTGATTGGGCACACGATCCACCCCAGAGAACGCACGAAA
AATGGCGAATAACATGGACTTACGGAGAGAGGGGACACTGTTGTGTGGAT
AGCGGACAGCCCGAGTAGTAGTGCACCCAACACAAAGCAGGCGGTCATCC
TCTCGGAAAGACAGCCCTCGAGAAATGCAGCCACGCATGGCACAATGGTT
GATCGGAACAACAACGAAAAGGCCAATGCACCGACACATGGCATCATAAT
GGTTGGTCGGCACGATGGTCACGACGACAGCTCCGAGAGAGAAACAAACT
GACGAAGAGAAGCGCTTAAACCTTGGGTCATGTCGATAGCGCGCAGCGCG
AGTAGCAATAAACAGCCAACCACAGAGCAGGCGGACGATGAAGAAATGCA
CCGACGCAGCGCGGACACGTTTCCAACCGAAATCAGTTGCTTTTTGAACA
AAGAATATATAAATCCGAAAAACACCAATCATCAGGAGGATAAGATAGAT
ACAGTGCACCTGTGCGAGAGAACTGCCCTCCTCCTTGTATGTGACGGCGC
TGCCGCGAGTGTACCCGGGTGCTCAACAATACGCATGTATCCATCTAGAG
CGCCTCGCGGGATTTTGACCCCGGCGTGTTCACTATTCATCAATATATAG
AAGCAGACGTTCAAGCGAGAGCCAAATTTCTAAAAATGCAATTGCATTTT
CAAAAACTTTTCAAAACGTATCTATCTAGTAGAATAGCAGTTGAGCTTGA
TAGGGAGTTAATCGAGAGAAATGAATAGAGAGAGCGAGCCAGAGCTGCCC
TTTTTGCATTTGACGGCGTGCCGCCAGTATACCGCGTTCCTTGCAAGAGG
GTAGACATGCTTGGCTCGCACATTGACCCCTTCGGCGCGTTGCACCAGTC
GGCGAATAAAAGCGGAGTTTCAAGCGAGAGTCAATTGTTCAAAAAGAGAG
AGATAAGAGATACACAAAGAGAGAGAGAGGAGAGGATGTGTGTGTAGCAG
TAGGGGAGGGGAGTGTGTAGCAGTAGGGAGTGGTCAGAGAGATAAGACGT
CTCTATTGTATGGCTGTCGAGGAGGAGCGACGGGAGGGAGAGAGACAGGA
GGGAGGGAGAGAGACAGCGGGACGAGGTATTCTCCGCAAAAATAAAAAAT
CCCAATTTCCAAAGGAATGGAAATCAAGCTCTGTCGAGCGTGACAACAAA
TCGATTGTAGGTCAAAGACAAGTTACATTTCGGAAGTATCTGTACATACA
TCTTAGTGCATTGGTGCACATAGTGGACTGCTGTAAACCAAGTTTAGCGC
TTGTCTCCTAAGTCCTTAGTTTGTGGCTCCATCCACTTAAAGCTTTGTGC
CCACAGCTTGCGTTTTTTTCTGTCTCAAGTCAGTCTGCACGCTGTAGAAA
AAAACAGGAGTATATACGAATATACGTACGTATGCTACAAAATTTTGTGC
CGGGTAACCTCTATGCCTCCGCGTGATAACCAACGATAGCGAGAACGCGT
CGCAGACAGAACTTGTGGTTACGAAATTTGGCAGTATATGTATCATGAGG
ACCTAGCACCGAAAGTGGCGCGTCGAAATACACACAGCGGCAGTTAGGAA
GGACGATTTTCTCATAAAAATTGCCTTCGCGCGGCGGTTTAGGCTAAGCT
TCCCCCTCAACGGTTTAGGAAGGGTGCACTGGTATATCAAAGCAGGTGTT
CCGAGGGTCGTTCAGCACTTGGAATTTCTCTGCAACACGCAGTATAGGCC
GAGAACTCGTAATCGGCGCGAAGCAATATTTGACTTCACAGCATTTTTTG
CCGGATCTTTTTTTTGTATCGAACGAAGAGTGCGTACGATATCCGCGCAA
ATTCAAAAGTTGCTTCGTGCCGATTGCGAGTTCTCAGCCTGTGCTGCGTG
TTGCAGCAAAACTCCCAAGTGCTGAACGACCCTCACAATACCCTCTTTGA
CATACCAGTGCACCCTTCCTGAACCGTTGAGGGGGAAGCTAAGCTTACGC
CGTCGCGCAAACGCGACTTTAATGATAAATACGCCCCTCTCGTCTATTGC
TGTGTGTATTTCGACGCACCACCTTGGGTGCGAACTATAATAGTGTATGT
AGTTCATGCGCGAAGCTTCAAGCGGATCTGTGCTGTCGGTGACGCGTTCT
CGGGCTCGGGGGAAACACACGCGCCATCCGGCGCGAGGTTGCGCCGCACT
TGTTTTGCCAGGTATTTTGCGGCACAACTGTGAAAGTTTGTTTCGTCGGG
TTTGAGGGCAATCGGGGGAGGAACTTGACAAATCAGGTGTCATTAGTAGA
GTTCTGCCTTTCCTGTCGAATGAGTCATTAGACAGGAAACGCAGAACTCT
ACGGCCGCAGTGCCTTAGATCTGTGTATGTATAGTGTCGTCGCCGGACCG
CACAGCAGCCGAAAGGGTGTTTCCGACTGGCGCCCCCTTAAACCGGCGTG
CAGCACTGAAGTTTCAATTGACACCCCCCTCTCTCTCTCATTCTCCCTTT
CTCTGTTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCTGT
TCTCTTGNNNNNNNNNNCCGACTTTCCCGTGCCCCCCCCCCCCCTCTCCC
TTCCTCCCCTTTCCTGTTGCCCCCCCCCCCCCCCTCCGGATCGCCTCGCG
GCGCTTTGGTTTGGTTTGGTTTGGTCTTGTCGTCTTGCCTTTGTTCGGAA
GGCGCCGTCGCTGGAGGATGTCACGTGGCGAGACATGCGGGTCGGGCAGG
TGAGTGCAGCAACACTTCTGTAGAGGGGCCCGTTCCGGTGCTAGCAGCAC
ATGGACTACATACTAGCAGTACACCCGATGTCGCTGTAATCTGTACCTAG
GCTGTATCGGGGTGCTCCTCCTGGCTGTGTGCCCCGCTCTTGTTCTTGTG
CGAATGCTTGGTCGGTCGCAACCTTGTCGAGTGTGATGATGCGTTGCGGC
GCGTCCGTGTGTGCCCAAGCGCGCTTCGCCGCGTGCCGCCGCCGCCGCCG
CCGCCAGCGGTGTCTTTTTTTTTACAGGACATTCCCTTTATGGCATGGGC
ACTTTTGTAGTAGAAGTATTACACAGCGACGGCCGCGCTAGTACTGGCTA
ACCGGAAATGACGAATGGCGACCATCTCGACGGGGAAAACTAGGTGCTGT
TTCGCCGAGATGTGTTGGGTATTTCTGTGCGCGTTTGCTTCGCGCACATC
CCAGATCCCCAAAACAAACCGATGTCTCCGCTGGTATCGCATGCATATTT
TACCTACATGGGTATGATCGACCTCGAACGACAGCAGTAGCAGTTGATAC
TTCGGGGTAATTGTCGTGAGCGATAATCAGGGCAGTTCGACCTACACATG
TGGTCTACACACACACACACACACACACACGGCTGTTTCGTCGTCGAAGA
GTTGTGTTGCGCGCTCACGCTTATGTCATCGACCGACCAAAAACCGCGTC
CGTCAGGAATCGGCGAGAGACGTCTTTGAGCGCGTGCAGCGGCACGGGTG
GCCGGCCATGCCCGCGTTCTCCTTCGGAGGCATCCTCGGTGGGGAGGCCA
GCATCAGCGACGCAATCAACAGCGCCAGCGGCGGCGGCGTTGCCGGCCGG
GGAGGAAGAGGAGGAGACGGCGGGGGAGACGGCGGGGGAGACGGAATCGC
GAACTACCCCTGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10118:761..6976+

>mRNA_L-elsbetiae_contig10118.168.1 ID=mRNA_L-elsbetiae_contig10118.168.1|Name=mRNA_L-elsbetiae_contig10118.168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig10118:761..6976+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGATAGAGATGGCGAAAGCGGGCAGGGAAAAGAAGAACATGGGGT
AAACAAGATGGCAGATAGAGATGGCGAAAGCGGGCAGGGAAAAGAAGAAC
ATGGGGTAAACAAGGCGCCGTCGCTGGAGGATGTCACGTGGCGAGACATG
CGGGTCGGGCAGGCGCCGTCGCTGGAGGATGTCACGTGGCGAGACATGCG
GGTCGGGCAGGAATCGGCGAGAGACGTCTTTGAGCGCGTGCAGCGGCACG
GGTGGCCGGCCATGCCCGCGTTCTCCTTCGGAGGCATCCTCGGTGGGGAG
GCCAGCATCAGCGACGCAATCAACAGCGCCAGCGGCGGCGGCGTTGCCGG
CCGGGGAGGAAGAGGAGGAGACGGCGGGGGAGACGGCGGGGGAGACGGAA
TCGCGAACTACCCCTGGTGGGAATCGGCGAGAGACGTCTTTGAGCGCGTG
CAGCGGCACGGGTGGCCGGCCATGCCCGCGTTCTCCTTCGGAGGCATCCT
CGGTGGGGAGGCCAGCATCAGCGACGCAATCAACAGCGCCAGCGGCGGCG
GCGTTGCCGGCCGGGGAGGAAGAGGAGGAGACGGCGGGGGAGACGGCGGG
GGAGACGGAATCGCGAACTACCCCTGGTGG
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