mRNA_L-elsbetiae_contig7840.16800.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7840.16800.1
Unique NamemRNA_L-elsbetiae_contig7840.16800.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7840.16800.1 vs. uniprot
Match: D8LCG1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.240e-26
Identity = 64/83 (77.11%), Postives = 66/83 (79.52%), Query Frame = 2 
Query:   11 MNEFKGGNRFIGGAQFKASNNSRGGGHGGTGG----NSCGGCLQVREALRRSRVESRDLRASLFRAEDVIKQLTLTKAARRRG 247
            MN FKGGNRF+GGAQFK SN+SR G HG         SCGGCLQVREALRRSRVE RDLR SLFRAE VIKQLTLTKA RRRG
Sbjct:    1 MNGFKGGNRFVGGAQFKGSNSSRNGQHGXXXXXXXXKSCGGCLQVREALRRSRVECRDLRGSLFRAEHVIKQLTLTKATRRRG 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7840.16800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCG1_ECTSI1.240e-2677.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7840contigL-elsbetiae_contig7840:3153..3867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.5166755-CDS-L-elsbetiae_contig7840:3152..32801622816868.5166755-CDS-L-elsbetiae_contig7840:3152..3280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7840 3153..3280 -
1691683873.9245257-CDS-L-elsbetiae_contig7840:3152..32801691683873.9245257-CDS-L-elsbetiae_contig7840:3152..3280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7840 3153..3280 -
1622816868.529946-CDS-L-elsbetiae_contig7840:3737..38671622816868.529946-CDS-L-elsbetiae_contig7840:3737..3867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7840 3738..3867 -
1691683873.9406667-CDS-L-elsbetiae_contig7840:3737..38671691683873.9406667-CDS-L-elsbetiae_contig7840:3737..3867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7840 3738..3867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7840.16800.1prot_L-elsbetiae_contig7840.16800.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7840 3153..3867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7840.16800.1

>prot_L-elsbetiae_contig7840.16800.1 ID=prot_L-elsbetiae_contig7840.16800.1|Name=mRNA_L-elsbetiae_contig7840.16800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
SGAHERVQGRESIHRRRPVQGLEQQSGGRSRWNGWQFLRRVPAGARSAAT
FAGGKPRPEGVTFSGRGRHQAADSDKGGAAARSAQ*
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mRNA from alignment at L-elsbetiae_contig7840:3153..3867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7840.16800.1 ID=mRNA_L-elsbetiae_contig7840.16800.1|Name=mRNA_L-elsbetiae_contig7840.16800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=715bp|location=Sequence derived from alignment at L-elsbetiae_contig7840:3153..3867- (Laminarionema elsbetiae ELsaHSoW15)
AGCGGCGCTCATGAACGAGTTCAAGGGAGGGAATCGATTCATCGGCGGCG
CCCAGTTCAAGGCCTCGAACAACAGTCGGGGGGGCGGTCACGGTGGAACG
GGTGGCAATTCCTGCGGCGGGTGCCTGCAGGTATGCGAGTGTTACAATAG
TTTCTCTTTTCAATTTGGCAATTTTCCTATGGGAGCCTTGATACTCCGCT
TTTCCAGTGGGCAAGATTGTTTGTTGGAGGGCGAGGGGGGGGGTGGATCG
CACCTGCACGTGATGGAGAAATTTGTAGGGCCGGTATCTGCGGTAGCGTA
GAGACGGTTATTCTGAGAAGGCTAACTCGTTTGTTTTTGGTCAGTATGCT
TGGCAGAACGGCGTGCTGAGGAAGTGCTTTTGAGCGCCACCCACTGAACG
GCCGGCAATAGCCTACAGTAGTCGTGGAGGCGCCGGAACACTCTCCGTAG
CGGGCAGTACCCATTGGGGTGGCACACATTTTTCCAGCGTGCGGAAAACC
GTGAGAAAATGAAGAACGTTCGAGTTCCAGGAACGTGTTTAGAAATCGCT
CCATCGTCACCCCCAAGCGTTTCCTATTCCTGTCCAGGTGCGAGAAGCGC
TGCGACGTTCGCGGGTGGAAAGCCGAGACCTGAGGGCGTCACTTTTTCGG
GCCGAGGACGTCATCAAGCAGCTGACTCTGACAAAGGCGGCGCGGCGGCG
AGGAGCGCACAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7840:3153..3867-

>mRNA_L-elsbetiae_contig7840.16800.1 ID=mRNA_L-elsbetiae_contig7840.16800.1|Name=mRNA_L-elsbetiae_contig7840.16800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig7840:3153..3867- (Laminarionema elsbetiae ELsaHSoW15)
AGCGGCGCTCATGAACGAGTTCAAGGGAGGGAATCGATTCATCGGCGGCG
CCCAGTTCAAGGCCTCGAACAACAGTCGGGGGGGCGGTCACGGTGGAACG
GGTGGCAATTCCTGCGGCGGGTGCCTGCAGAGCGGCGCTCATGAACGAGT
TCAAGGGAGGGAATCGATTCATCGGCGGCGCCCAGTTCAAGGCCTCGAAC
AACAGTCGGGGGGGCGGTCACGGTGGAACGGGTGGCAATTCCTGCGGCGG
GTGCCTGCAGGTGCGAGAAGCGCTGCGACGTTCGCGGGTGGAAAGCCGAG
ACCTGAGGGCGTCACTTTTTCGGGCCGAGGACGTCATCAAGCAGCTGACT
CTGACAAAGGCGGCGCGGCGGCGAGGAGCGCACAATAGGTGCGAGAAGCG
CTGCGACGTTCGCGGGTGGAAAGCCGAGACCTGAGGGCGTCACTTTTTCG
GGCCGAGGACGTCATCAAGCAGCTGACTCTGACAAAGGCGGCGCGGCGGC
GAGGAGCGCACAATAG
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