mRNA_L-elsbetiae_contig784.16799.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig784.16799.1
Unique NamemRNA_L-elsbetiae_contig784.16799.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig784.16799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig784contigL-elsbetiae_contig784:14440..18382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.3794358-CDS-L-elsbetiae_contig784:14439..147261622816868.3794358-CDS-L-elsbetiae_contig784:14439..14726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig784 14440..14726 +
1691683873.8411264-CDS-L-elsbetiae_contig784:14439..147261691683873.8411264-CDS-L-elsbetiae_contig784:14439..14726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig784 14440..14726 +
1622816868.3900437-CDS-L-elsbetiae_contig784:18355..183801622816868.3900437-CDS-L-elsbetiae_contig784:18355..18380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig784 18356..18380 +
1691683873.8507404-CDS-L-elsbetiae_contig784:18355..183801691683873.8507404-CDS-L-elsbetiae_contig784:18355..18380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig784 18356..18380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig784.16799.1prot_L-elsbetiae_contig784.16799.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig784 14440..18380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig784.16799.1

>prot_L-elsbetiae_contig784.16799.1 ID=prot_L-elsbetiae_contig784.16799.1|Name=mRNA_L-elsbetiae_contig784.16799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
KNCVARARDREEQGARERRARENRRGPASWTVRDSKRRADGGWRRVIHRC
NHRVEHFFKQKNTRCSRKTACSGTTARVGSMPMPQRHRDDAGEGTRRMAS
RAAT
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mRNA from alignment at L-elsbetiae_contig784:14440..18382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig784.16799.1 ID=mRNA_L-elsbetiae_contig784.16799.1|Name=mRNA_L-elsbetiae_contig784.16799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3943bp|location=Sequence derived from alignment at L-elsbetiae_contig784:14440..18382+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAATTGTGTTGCACGTGCGAGAGACAGAGAGGAGCAGGGAGCGAGAGA
GAGGAGAGCGAGAGAGAACAGAAGAGGTCCCGCCTCTTGGACAGTGAGGG
ATAGCAAAAGGAGAGCTGACGGAGGCTGGAGAAGGGTCATTCATCGCTGT
AACCACAGAGTAGAGCACTTTTTCAAACAAAAAAATACGCGTTGTTCACG
AAAAACAGCGTGCAGCGGGACAACAGCCAGGGTTGGATCGATGCCGATGC
CACAACGGCATCGGGATGATGCCGGAGAAGGAACGCGGTGAGTAATGGTG
GAGAAGGAACGGCCTGAGGATTACCGAGTAATGAAGATTGCAGAATGCGG
CACACAAGCCCACAAAAATATAAATTAACCTGGCTGCAGCGTGCGCTCCG
GATCGACACAACGCTCGGGGTGTCACAAACCACCACTTTTTTGTGTGTAC
GATTGGCTCTCTTTTGGGAGGCACCAGACCGCCTGTAATGAAGCATGCTG
CAACGTGCGTGAGTTAGATGTGCGGACAAGAGGCATGTTTCCAATTAAAC
GTGCGCGATTTATACGTACACAACTAGTAGTAGTAATACGCCGTACCTTC
CAATCCATGGCCTGGATGCAGGGGCACGTTGGTCCTAAATATCCGAAAAA
CGATATTTCGCGATTTGTTTGTAAGTTTTCATGCTGTCGCGCGGCGGGTG
TGTGACGTAGTAACCCTCCGGGTGCCTGCCAACACCAGCACTAGAGCCAG
CTGTGCCATTTCTCCGGTCAGCGAGATCTGCTGATGCATGATCTCCGACG
CATCGGTACAAAAAAGTACTAATGCGCGGTCATCGAGGAGGGAACCAAAC
ACAAAAAGTTGTGTTGCTTCGCTACGGAACGCATCCTACAGAAACTAAAC
GCAGTGTGGCCCGCTTCCACGTGTGTCGGTTTTTTGCTTTTTCTGGCGAG
TGCCCCACCCGATATCTACGAGGGACAGCAGTTAGTTCGGCTGGTCGATA
TATCGAAGAGAAAGTATTTCGTATTTCGAAGAGAAAGTATTTCGTATTTC
GTCGGGAAAGTTAGCCGAGAAGAAACACATCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCCGTCTTCTCCCTAGATGCACTGCGTAC
ATACTCTAGGGAGGGAAGAGAAGAATTCATTCCATCCACGGAGGCGTCCT
CAGCACCCTACATACACCCCCATGTTGTTGAGCAAGCAGTAACTGCCCGA
AAGGTTTCTGATGGATCCTGCCATCTCCGCCTCTCCGCTGCCCGTGTACA
GCGTGATTCATCTTGTCCGTTGATTGATGATTGATCGCACCAACAACCAG
TTGAGCCACAATGGTTGATCACAGAGAGAGGCAGGCCCCCCGTTTCACAG
GCACGGAAACGGTGTTGCCATGAAAATGGTTGTTGCAGAACGACTCCGCG
CGCACGCACACCCCACGTGTATATTTTCGAACCCACGTTTGCTTCAATAT
AGTTTGTTCTGTATGTACAATACGTCGTATAAGTCTTACATACGGATACC
TGTGTATTTGCCGAATTCGCATCTACTTCGTACAAATTTAGATAGAACAC
ATTTTCAAAAGGTATATATACACGTAAAATCGTGCATATTTTGTCCAAAA
TGCTGTTGTACCTTTTTATGCATTTTCGTGCATTAATCGTGCATGTGTGA
CCCAAATAATTTTCGAGCACAAATGGCCTATTCCGTCTGCCCGATAAGCC
CATTGATGCAAAATTCATGCACTCTAATACGTCAAGGCCTAAGTGTGACG
TCATACCGCGCATTCTTTGTGGACACCAGAAGAATGCGTGGTCATGACGT
CACGATCACTAGTGTTCCGACAATGCCGCATTGTTGATTCTTCACCAAAA
CTAAAAACCGTTCCGATCTCTCCACCCAGTATATACCTCCTAAAAACCGT
TCCGATCTCTCCACCCAGTACCTCCCTGTGTCCGTAATACAACATATTCA
ACGCTTGATGCGATAACCCCCGTGGTCACAGGCTAACTATTGTATTGTAC
GGAAATCAAATGGATCCGAAGGGTCAGCAAAGCGATCCAAATCAATGACA
AATAGATAGTGTGGAGCCCCCCGCTCCCCTCTACAGCACACGCTATGACG
AGGTACATATGATATGTGTGGTATCTAATACACATGCAACAGCAGAGAGG
CCCGCGAGCCAAATAACAGAGAACCAAAGAGGACCGAAAGGCCAAAACGT
CAAGCGGCAACAAGCAACAAGCACCATGAGGCAAAACAAAACAGGCTAGG
CAAACTAAAAAGGCAAGCAATCCATAGAGGTGACAAGGCAAGGGGGCCAA
GAGGCAGGGATGCGTACACAGAGGCTAAACGGCAAAGAAGGCCAAGGCGG
GAGGGGGGTGCCGTGACATCATTGATGCCGAAGCGAACGGTGTAGTGCGA
GGCGACAAGATGAAGATCAAGACCTCTCACGCTTAGCAGTCGGCATTAAC
ATTGCATCGTGAACACATAGCAGCACTCCACGCTCTCGTACGTGACATAC
ATATGTATGATGTATCTATATGCCGACCGCAGGCGACGCACTCCAAATCA
AATACCAGGTACTCAGTAGTGCTGTTGGCGACGATTCCGCCGCACTTTTT
CCGCGCCGTCTTTTTTCGACAAAGCTACAGCAATAGGCCCCCGTTTCTGT
TTGTAGAGGTGGGAATAGAACCGTGTGGTGTTGATAGAGTACCCCAAGCC
GAAACATTCCGGTCGGAGGGCGGTTGTGTCGGCCGGGGAGGAAAAATAGC
GTTTTGGGATATAGGCCGGAGATACGGAGGCATTTCAAGTAGGCGGGGCC
CAACACCTGTTAGCCCCGTAAACGTTTTTCACGTTTTGCCAGTCCACCAC
CTCACCTATGCTGCCTGTGAAGCACGATATGTTGTTGGCTACCCAAAGTA
ACACTGCTAGGATGTTTTGTTGTCGGTTGTCTGACTGCGGGTACGCGTTC
CAGCTGTGATGAAAAAGGATTCCGTCGAAACCTTCGTTGGTGCGGAGGGA
GTGATTTCGGGCACAAGCTATCATCGCGCCCGGCCCTTGGGTCAGCAAGA
TAGCTTATCTTCTTGGCTATCCAAAGCCCCAAGCATACCCAGGGCTTAAC
ACCTACCGGCCGAGAAATTCGCGATGCTGCAAACCCTCTTGTGACTTGTT
GAAAGTGTGGGCTGGGAGATTCACCGATGCCCCGCGTTTGCTGGCTCTCT
CTTATCTCTTTTCACAGTCCTGTTCTCTCTCTCTTTCACCAGGCGGTGTC
GTTGGGCACTCTGATATTTCGGGGACAAGCATCTTCTACGAGCGGAAGTT
TGGCTTTTTAGCATCTCTGTTATCTTAGGTACAGGATGTATCGAAGACAT
CGTTGTCTTAATCTGGGATCGCGGAGCTATCGTGGTATTTGTCTGCCAGC
TGCTCTGCTAGTATAAATCCGAGTGGTTTTGAACGGTTTCTCAAGGGGGC
GCTAAAAACGTCATATTCCGCCGCGGCATAAAAAAGGCGGCGGGGCCCCT
CTCCCAATGACACTGACCAGTGGTCCCGTGCCCTTGGGGGTGCCGTGGTT
TCTAGGATCGTGCAAAAGTGGGGACCAAAGAAAGGGCAGAGTATATGCGT
ATCTACATGTGGCTACTTTTACGCGCGGGGCGCCCACATGACATGTTTGT
TTATCGTCGCTTGCACTTTCCGCAGCAAAATGTATCCAACAGCTACATAT
CTACATACATCCGCTTGGTGTCGTGTTATTGTTGTTGCCTGGCCGGCAGC
ATGAGACGAGTAACCTCGACTCGCCAGTAGGTTTCGAGCATCATTGGACA
TACTTTCTGACGACGCCCATACAACGCGCTGGCCCCCTCGCATTTCGGCC
TCTCCCCGCGCTTCAGAAGGATGGCCTCTCGCGCTGCCACCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig784:14440..18382+

>mRNA_L-elsbetiae_contig784.16799.1 ID=mRNA_L-elsbetiae_contig784.16799.1|Name=mRNA_L-elsbetiae_contig784.16799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig784:14440..18382+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAATTGTGTTGCACGTGCGAGAGACAGAGAGGAGCAGGGAGCGAGAGA
GAGGAGAGCGAGAGAGAACAGAAGAGGTCCCGCCTCTTGGACAGTGAGGG
ATAGCAAAAGGAGAGCTGACGGAGGCTGGAGAAGGGTCATTCATCGCTGT
AACCACAGAGTAGAGCACTTTTTCAAACAAAAAAATACGCGTTGTTCACG
AAAAACAGCGTGCAGCGGGACAACAGCCAGGGTTGGATCGATGCCGATGC
CACAACGGCATCGGGATGATGCCGGAGAAGGAACGCGAAAAATTGTGTTG
CACGTGCGAGAGACAGAGAGGAGCAGGGAGCGAGAGAGAGGAGAGCGAGA
GAGAACAGAAGAGGTCCCGCCTCTTGGACAGTGAGGGATAGCAAAAGGAG
AGCTGACGGAGGCTGGAGAAGGGTCATTCATCGCTGTAACCACAGAGTAG
AGCACTTTTTCAAACAAAAAAATACGCGTTGTTCACGAAAAACAGCGTGC
AGCGGGACAACAGCCAGGGTTGGATCGATGCCGATGCCACAACGGCATCG
GGATGATGCCGGAGAAGGAACGCGAAGGATGGCCTCTCGCGCTGCCACCA
AGGATGGCCTCTCGCGCTGCCACC
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