mRNA_L-elsbetiae_contig7839.16797.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig7839.16797.1
Unique Name	mRNA_L-elsbetiae_contig7839.16797.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig7839.16797.1 vs. uniprot
Match: D7FQY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY2_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 5.930e-104
Identity = 148/177 (83.62%), Postives = 159/177 (89.83%), Query Frame = 1

Query:    1 GTKLEWQRHDEAQSMSRQLFGSLNVCDVELQGSADQARKLEQQELEATYTDAWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALKISQDSSRPGFWRAGPQTVRRLEALEPSALLEVHVGPRNTRYYQEIASQSQVEDAVELIEILTPLGVKPGVCRYLGPFVDL 531
            GTKLEW R+ EA+S SRQLFG+L++CD ELQGS D ARKLEQQELEATY D WAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVAL+  ++SSR   WRAGPQTVRR+EALEPSALLEVHVGPRNTRYY+EI SQ+  EDAVELIE LTPLGVKPGVCRYLGP VDL
Sbjct:   86 GTKLEWHRYHEARSFSRQLFGNLSICDAELQGS-DNARKLEQQELEATYADGWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALRTPEESSREACWRAGPQTVRRIEALEPSALLEVHVGPRNTRYYKEIPSQT--EDAVELIETLTPLGVKPGVCRYLGPSVDL 259

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7839.16797.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7839.16797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FQY2_ECTSI	5.930e-104	83.62	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7839	contig	L-elsbetiae_contig7839:217..3279 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-09_003310.1
Exons	4
Model size	540
Cds size	540
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7839.16797.1	prot_L-elsbetiae_contig7839.16797.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig7839 217..3279 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816868.3090107-CDS-L-elsbetiae_contig7839:216..316	1622816868.3090107-CDS-L-elsbetiae_contig7839:216..316	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7839 217..316 +
1691683873.8032165-CDS-L-elsbetiae_contig7839:216..316	1691683873.8032165-CDS-L-elsbetiae_contig7839:216..316	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7839 217..316 +
1622816868.3215055-CDS-L-elsbetiae_contig7839:2268..2447	1622816868.3215055-CDS-L-elsbetiae_contig7839:2268..2447	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7839 2269..2447 +
1691683873.8147168-CDS-L-elsbetiae_contig7839:2268..2447	1691683873.8147168-CDS-L-elsbetiae_contig7839:2268..2447	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7839 2269..2447 +
1622816868.3330617-CDS-L-elsbetiae_contig7839:2759..2903	1622816868.3330617-CDS-L-elsbetiae_contig7839:2759..2903	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7839 2760..2903 +
1691683873.823696-CDS-L-elsbetiae_contig7839:2759..2903	1691683873.823696-CDS-L-elsbetiae_contig7839:2759..2903	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7839 2760..2903 +
1622816868.3459144-CDS-L-elsbetiae_contig7839:3162..3279	1622816868.3459144-CDS-L-elsbetiae_contig7839:3162..3279	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7839 3163..3279 +
1691683873.8324924-CDS-L-elsbetiae_contig7839:3162..3279	1691683873.8324924-CDS-L-elsbetiae_contig7839:3162..3279	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7839 3163..3279 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig7839:217..3279+
coding sequence from alignment at L-elsbetiae_contig7839:217..3279+

protein sequence of mRNA_L-elsbetiae_contig7839.16797.1

>prot_L-elsbetiae_contig7839.16797.1 ID=prot_L-elsbetiae_contig7839.16797.1|Name=mRNA_L-elsbetiae_contig7839.16797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
GTKLEWQRHDEAQSMSRQLFGSLNVCDVELQGSADQARKLEQQELEATYT
DAWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALKISQ
DSSRPGFWRAGPQTVRRLEALEPSALLEVHVGPRNTRYYQEIASQSQVED
AVELIEILTPLGVKPGVCRYLGPFVDLGE*

mRNA from alignment at L-elsbetiae_contig7839:217..3279+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig7839.16797.1 ID=mRNA_L-elsbetiae_contig7839.16797.1|Name=mRNA_L-elsbetiae_contig7839.16797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3063bp|location=Sequence derived from alignment at L-elsbetiae_contig7839:217..3279+ (Laminarionema elsbetiae ELsaHSoW15)
GGGACAAAGCTCGAGTGGCAGCGGCACGACGAAGCTCAAAGTATGTCGAG
ACAGCTCTTCGGGAGTTTGAACGTCTGTGATGTCGAGCTCCAGGGATCTG
GTAAGAAAGTTGCGGAAATGGCTAAAGTGCGCAGGTCGTGCCAAGCAAAT
TTTGTTGTTGAAGCGGATGCCGGTAAGCCTGGGGAAACATAAACATGTCT
ATACTATGCAATCCTACCTCCGTATATAATAAGGCCCGAAAAACACGAAC
AACCCGAAGTGTGTGCGGAGTCCTACAATCTTGTATGGTGTTCATAGAGG
ACACCATGGAGAAGGTGTGATGCGTGTTCGCATGTTTGCACCTGGTGCTG
GGGCGGAGTTATTGAGAGCCGCAGCAGGAGCTCCCGAATTCAGCAATCTG
GGCCGACAGCAAACATCTCCCACTGCTACACTCGCCACCACAGACCCTAA
CCTCCTCACCTACGGGTCTCCCAGCAGTAGGTAGTGGTATGAGCTACGGC
TGTGGACCAGTAGTTCAGAGGATGGGGTCTGTGGTGGCAAGCACAGCAGC
AGTGGAAGATGTTCGCTGTCGGTCCAGGTTTGCCGAGGATTTGACCTACT
GCTGCGGCTCTCGACAACTCCGCCCCAGCTGCCGATATAAGCGAGCCAAC
ACACACGTCGCATCTCCATGGTGTCCTCTACTGTTACCATAGAAGATTGT
AGGACTCCGCACAACCCACACCTTGTTTGAACGCCCGCAATGTTGCCTGT
ATTGTCTTGACTTTTGAATGGGTGCAAAAAATATCTTGATTTCAGAGTAG
ACGGTTGGAGGTAGACCACGTGATACGTATGTAAAGAGCAGCCCCGCTCG
CCGCTCAGCGAGCGAATCAACACGCCTCTTTTTGCGCGAACCTTCCCTAC
CGGCATGGTGGATCTGGCCTAACTGCCGCAAGAGCTTGTGGGGGACACAT
ACCGTAGGTGACACAAGATATCACACCACCCTCTGGACCAAATTTTAGAG
CTACATAACTCCGTAACGAAGAAGGTTCCAGCACTAAACGACATTTTTTT
GGACAGCGCTCGACTAGATCTTTCCAACGCCACCCATTTCGGCACTGACA
GTGTTCTGCTGGGGAGGAATCAAGCTTTGAAATATGTCCAGGGGGTGTGG
TATCTTGTGTCACCTACGGTAGTCCATGCTTTAGTAGTTCCACGCAAAGC
TCATCTGTTGGTGGGCGAGCAAATGTTCAACTTGCAAATGTTGATCTCCC
CACCGGCAAAGCACCTGGTACACTCCTGATACAAACCCGTGTGTTAGAAA
TAAATCATGGCATCGTGTGGTAGAATGTTGCACGAGGGCCACTCTATAGT
TTATTTTCACGTGTTTGAATGCACTGCTAACTCCACACGCCACCTCTTCT
ACAACACAAACCCACGGACCCACCCTTGTACCCAACACCCACCACAACAC
CCAAGAGGAAACCCACCCGCCCACCCTAACCCTGCCCACCGCTTGCAACA
CCCACACCTACTCCATAACCCAGCCCAACCCCCAAAATAGCGCGTGAAAG
CAAAAATATCTACCTTTTATCTACAAAAACATCGCATAGCCTACAAATCA
ACGCGAGTGCAGAAAGCCAATGCACCCTTCTCAGCATGTCGGCCTTTACG
CCTTCTCTTCTCTGCTGTGTGCATTTACAGGGAGTCTCTCATGCAGCTGT
GTGTGTAGCATTTTTTCAATTTATGATAAATCTCGTAATTCGATGCATTG
GTTTATTGGTGACAAACCAGTTTGACTCTCTTCAATCGGTACTTTATGTC
GCGTAATAGCCGTAGCCGCTACTAGCTGTATGCACAACTATATGCGACCG
CAACCGGACGCTCGCGGCACTTCAACCGAGATTGTGTCACTATTTATATG
ACAGGTGTGGGGGAGGGCGACCGCAGCAGTTTAGCGAAACGTATTGCTGT
GCTGCCTAATTTTCATTCGACAGCGAAGTTCTGCTCGCTCCTCCTGAAAT
CGTCTCTCGCACTCCACATGTTCTTGCCGCATGCTTAAATGTATAATTTA
AGCAGACCAGGCACGGAAACTTGAGCAGCAGGAGCTTGAGGCGACGTACA
CCGATGCATGGGCCGTGGGGGGTAGTGAGGAGAGCGACTGCGTGTGTAGA
GGAGGTAGATGTCCCCGCATGTGGGACTGCCCGTTCTGGGTGGACAGGAG
GCGGGCGGAAGCAAAGGGCAGTAGTGCCCACGTGAGTATTGACGACAAGT
AGACACACGAGTCGAGAGGAGGCCGCGAACCGCTGTAGCTGCTATTGCGT
CGTGCATCAGACACGCTAGTTTGCTGACTGGTATGAGATGAAGGGCTCCA
TTCACTTTTCGCTGCACTGCCTCCTGTTGGGTCCCTGCTACAGAAGTAGC
AGTGCTGCGATGGATTTAGGTGGCGTATTGGCTGCTTAGGAAGAGCATGA
GAGAGTGCCCCATAACCTTGATTTGGCGTCCCGCGAACCGCCCACGGTGT
TTCACAGCTTTTACGTACTTCGCTCATATGCTCTCGACCCCAGGTTGCGT
TAAAAATTTCGCAAGACAGTTCCCGTCCCGGCTTTTGGAGAGCAGGGCCT
CAGACCGTGAGAAGATTGGAGGCGCTAGAGCCGTCAGCTCTCCTAGAAGT
TCACGTGGGGCCACGAAATACTCGATACTACCAGGAGGTGGGTGGGAGTG
CCTGGGTGTTTTTTGAACGATATTTTATGTTTTTTTAACGATATTTTATG
CGACTCCTGGCACATCAACCGTAGCGTGAGCAGGTTATGATCACGTTGTG
TGCAACTGTTGGACTGCATGAAGAAACAAACCGGTTCCATGCCCCTCGTT
CTCTCTATTTAGATATTTATTGAGTCTGGAAACATACTTGTACACCATCT
CCGCCTGCCCGTGCCCATCGCCCCGAACGCACGCACGCACGCGCAGATTG
CGTCTCAGTCTCAGGTCGAGGACGCGGTGGAGCTCATCGAAATATTGACT
CCGCTAGGAGTTAAGCCCGGCGTGTGTCGATATCTTGGGCCGTTTGTGGA
CCTTGGCGAGTAG

Coding sequence (CDS) from alignment at L-elsbetiae_contig7839:217..3279+

>mRNA_L-elsbetiae_contig7839.16797.1 ID=mRNA_L-elsbetiae_contig7839.16797.1|Name=mRNA_L-elsbetiae_contig7839.16797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig7839:217..3279+ (Laminarionema elsbetiae ELsaHSoW15)
GGGACAAAGCTCGAGTGGCAGCGGCACGACGAAGCTCAAAGTATGTCGAG
ACAGCTCTTCGGGAGTTTGAACGTCTGTGATGTCGAGCTCCAGGGATCTG
GGGACAAAGCTCGAGTGGCAGCGGCACGACGAAGCTCAAAGTATGTCGAG
ACAGCTCTTCGGGAGTTTGAACGTCTGTGATGTCGAGCTCCAGGGATCTG
CAGACCAGGCACGGAAACTTGAGCAGCAGGAGCTTGAGGCGACGTACACC
GATGCATGGGCCGTGGGGGGTAGTGAGGAGAGCGACTGCGTGTGTAGAGG
AGGTAGATGTCCCCGCATGTGGGACTGCCCGTTCTGGGTGGACAGGAGGC
GGGCGGAAGCAAAGGGCAGTAGTGCCCACCAGACCAGGCACGGAAACTTG
AGCAGCAGGAGCTTGAGGCGACGTACACCGATGCATGGGCCGTGGGGGGT
AGTGAGGAGAGCGACTGCGTGTGTAGAGGAGGTAGATGTCCCCGCATGTG
GGACTGCCCGTTCTGGGTGGACAGGAGGCGGGCGGAAGCAAAGGGCAGTA
GTGCCCACGTTGCGTTAAAAATTTCGCAAGACAGTTCCCGTCCCGGCTTT
TGGAGAGCAGGGCCTCAGACCGTGAGAAGATTGGAGGCGCTAGAGCCGTC
AGCTCTCCTAGAAGTTCACGTGGGGCCACGAAATACTCGATACTACCAGG
AGGTTGCGTTAAAAATTTCGCAAGACAGTTCCCGTCCCGGCTTTTGGAGA
GCAGGGCCTCAGACCGTGAGAAGATTGGAGGCGCTAGAGCCGTCAGCTCT
CCTAGAAGTTCACGTGGGGCCACGAAATACTCGATACTACCAGGAGATTG
CGTCTCAGTCTCAGGTCGAGGACGCGGTGGAGCTCATCGAAATATTGACT
CCGCTAGGAGTTAAGCCCGGCGTGTGTCGATATCTTGGGCCGTTTGTGGA
CCTTGGCGAGTAGATTGCGTCTCAGTCTCAGGTCGAGGACGCGGTGGAGC
TCATCGAAATATTGACTCCGCTAGGAGTTAAGCCCGGCGTGTGTCGATAT
CTTGGGCCGTTTGTGGACCTTGGCGAGTAG