mRNA_L-elsbetiae_contig7838.16796.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7838.16796.1
Unique NamemRNA_L-elsbetiae_contig7838.16796.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Match: D7G154_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G154_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 6.180e-50
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVDE 234
            R FHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVDE
Sbjct:   42 RMFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVDE 119
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BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Match: A0A6H5KW20_9PHAE (UBC core domain-containing protein n=5 Tax=Ochrophyta TaxID=2696291 RepID=A0A6H5KW20_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.740e-49
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVDE 234
            R FHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVDE
Sbjct:   75 RMFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVDE 152
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BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Match: B8CAB3_THAPS (Ubiquitin-conjugating enzyme 1 n=19 Tax=Bacillariophyta TaxID=2836 RepID=B8CAB3_THAPS)

HSP 1 Score: 152 bits (384), Expect = 8.080e-46
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVDE 234
            + FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNPASPANSEASRLY ENRREYNRRVRE+VEQSWVDE
Sbjct:   75 KMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPASPANSEASRLYNENRREYNRRVREIVEQSWVDE 152
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BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Match: A0A1Z5KB46_FISSO (Ubiquitin-conjugating enzyme E2 A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB46_FISSO)

HSP 1 Score: 151 bits (381), Expect = 9.740e-46
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVDE 234
            + FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNPASPANSEASRLY ENRREYNRRVRE+VEQSW+DE
Sbjct:   47 KMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPASPANSEASRLYNENRREYNRRVREIVEQSWLDE 124
[Close]
BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Match: A0A4D9CYF5_9STRA (UBC core domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYF5_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.340e-43
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWV 228
            + FHPNIYN+GQICLDILQNQWSPIYD+ AILTSIQSLLCDPNPASPANSEASRLYQ+NRREYNRRV+EVVEQSW+
Sbjct:   75 KMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQDNRREYNRRVKEVVEQSWI 150
[Close]
BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Match: K3WSJ4_GLOUD (UBC core domain-containing protein n=37 Tax=Oomycota TaxID=4762 RepID=K3WSJ4_GLOUD)

HSP 1 Score: 145 bits (366), Expect = 4.430e-43
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWV 228
            + FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNP SPANSEA+RL+QENRREYNRRVRE+VEQSWV
Sbjct:   75 KMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSEAARLFQENRREYNRRVREIVEQSWV 150
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BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Match: F0WM57_9STRA (Ubiquitinconjugating enzyme E2 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM57_9STRA)

HSP 1 Score: 145 bits (366), Expect = 7.630e-43
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWV 228
            + FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNP SPANSEA+RL+QENRREYNRRVRE+VEQSWV
Sbjct:   93 KMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSEAARLFQENRREYNRRVREIVEQSWV 168
[Close]
BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Match: A0A8J2SZI0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZI0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 9.380e-42
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVDE 234
            R FHPN+YN+GQICLDILQNQWSPIYDI AILTSIQSLL DPNPASPANSEASRLY E+RREY+RRVREVVEQSW DE
Sbjct:   75 RVFHPNVYNDGQICLDILQNQWSPIYDISAILTSIQSLLSDPNPASPANSEASRLYSEHRREYDRRVREVVEQSWQDE 152
[Close]
BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Match: F0YDU2_AURAN (UBC core domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU2_AURAN)

HSP 1 Score: 142 bits (358), Expect = 1.180e-41
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVD 231
            R FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLL DPNPASPANSEAS+L+ ENRREYNRRVREVVEQSW D
Sbjct:   75 RIFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLSDPNPASPANSEASKLFSENRREYNRRVREVVEQSWDD 151
[Close]
BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Match: A0A7I4AJI6_PHYPA (UBC core domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4AJI6_PHYPA)

HSP 1 Score: 138 bits (348), Expect = 1.070e-40
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVREVVEQSWVDE 234
            + FHPNIY +G ICLDILQNQWSPIYD+ AILTSIQSLLCDPNP SPANSEA+R+Y ENRREYNRRVRE+VEQSW  E
Sbjct:   49 KMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENRREYNRRVREIVEQSWTAE 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7838.16796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G154_ECTSI6.180e-5098.72UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KW20_9PHAE1.740e-4998.72UBC core domain-containing protein n=5 Tax=Ochroph... [more]
B8CAB3_THAPS8.080e-4692.31Ubiquitin-conjugating enzyme 1 n=19 Tax=Bacillario... [more]
A0A1Z5KB46_FISSO9.740e-4691.03Ubiquitin-conjugating enzyme E2 A n=1 Tax=Fistulif... [more]
A0A4D9CYF5_9STRA1.340e-4389.47UBC core domain-containing protein n=2 Tax=Monodop... [more]
K3WSJ4_GLOUD4.430e-4389.47UBC core domain-containing protein n=37 Tax=Oomyco... [more]
F0WM57_9STRA7.630e-4389.47Ubiquitinconjugating enzyme E2 putative n=1 Tax=Al... [more]
A0A8J2SZI0_9STRA9.380e-4288.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YDU2_AURAN1.180e-4189.61UBC core domain-containing protein n=1 Tax=Aureoco... [more]
A0A7I4AJI6_PHYPA1.070e-4082.05UBC core domain-containing protein n=1 Tax=Physcom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7838contigL-elsbetiae_contig7838:6752..7800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7838.16796.1prot_L-elsbetiae_contig7838.16796.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7838 6780..7777 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.2405736-UTR-L-elsbetiae_contig7838:6751..67791622816868.2405736-UTR-L-elsbetiae_contig7838:6751..6779Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7838 6752..6779 +
1691683873.7578309-UTR-L-elsbetiae_contig7838:6751..67791691683873.7578309-UTR-L-elsbetiae_contig7838:6751..6779Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7838 6752..6779 +
1622816868.2773657-UTR-L-elsbetiae_contig7838:7777..78001622816868.2773657-UTR-L-elsbetiae_contig7838:7777..7800Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7838 7778..7800 +
1691683873.7894785-UTR-L-elsbetiae_contig7838:7777..78001691683873.7894785-UTR-L-elsbetiae_contig7838:7777..7800Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7838 7778..7800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.2535386-CDS-L-elsbetiae_contig7838:6779..69041622816868.2535386-CDS-L-elsbetiae_contig7838:6779..6904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7838 6780..6904 +
1691683873.7670808-CDS-L-elsbetiae_contig7838:6779..69041691683873.7670808-CDS-L-elsbetiae_contig7838:6779..6904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7838 6780..6904 +
1622816868.2636473-CDS-L-elsbetiae_contig7838:7719..77771622816868.2636473-CDS-L-elsbetiae_contig7838:7719..7777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7838 7720..7777 +
1691683873.7774162-CDS-L-elsbetiae_contig7838:7719..77771691683873.7774162-CDS-L-elsbetiae_contig7838:7719..7777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7838 7720..7777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7838.16796.1

>prot_L-elsbetiae_contig7838.16796.1 ID=prot_L-elsbetiae_contig7838.16796.1|Name=mRNA_L-elsbetiae_contig7838.16796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MVRSVWTSCRTNGARSTISAPSSRRSNPSCATPTRHHRQIRRRPACTRRT
AGSTTAACGK*
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mRNA from alignment at L-elsbetiae_contig7838:6752..7800+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7838.16796.1 ID=mRNA_L-elsbetiae_contig7838.16796.1|Name=mRNA_L-elsbetiae_contig7838.16796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1049bp|location=Sequence derived from alignment at L-elsbetiae_contig7838:6752..7800+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGGTTTCACCCCAACATTTACAATAATGGTCAGATCTGTCTGGACAT
CCTGCAGAACCAATGGAGCCCGATCTACGATATCTGCGCCATCCTCACGT
CGATCCAATCCCTCTTGTGCGACCCCAACCCGGCATCACCGGCAAATTCG
GAGGTATATTCAGCGTGTTTTTGTGGTGTGTGCGGCCGGCCTTTATTGTT
GTTAATCTTCAGTGGTACGCGTGCTACAGCAGTATCAGGGTGGGTTGACA
TGGAAAAACTCGAAATCGAAGCGGCGAAATTCGCGATTGGTCAACGTGGC
ACCTGCGGCCACCGACTGTGTGGATTACCCAAAATAGAGCGGGCAACACA
CATAAAACGAGTGGTTCGAAATGATTTTTTCACGAACGAACTGTGTATAT
ATGGGTTACGGATTTTGTGCGAGTATGTCTTGGACGGAAAGAGGGGGGTC
AGTATGCGTACAACAGTTCCCTCTGGAACGACTTTTTTCACAGACTGGAC
GTAGGCTGCTGACGTTTGTATGCATTAATTAAAAATAAAAGAGCAGACGA
ATGGATTCTATGGTCCGTGCACAGCAATTTGTCCAATAATTTCACCTACA
CCACCCAGGTACCCTTCGCTCGTACTTCGGAGCTCCAACATACTTCTTTA
TTTGTTTTGGAAACGGACGTGGCGAAGCTATCGAAGCCGCAACGGTTCCA
CGTCTCTCGAGAGCTCTGACCGTTTCATGCATGCATGCGGCACGTAGCAA
GCAACTCGCTCCTCGGATTTCCCTTTTTTTTTTCCCGACGTGTTTTCCTG
TCGTGTGCGGTCGTGTCTCATGTTTGTGAAACATTCACGTCTTGAGCGTT
TCTCACTTGAGCGGTTCTCGCTTCTTCCCTGTTCCACCCACTCGCGTCCC
GCTGCCCACCGCTGTTTTCGCTCGATTCGATCACCCCCCGCGTTTATTTC
TTGTTGCTTTCTCCGCAGGCGTCCCGCCTGTACCAGGAGAACCGCCGGGA
GTACAACCGCCGCGTGCGGGAAGTAGTGGAGCAGAGCTGGGTGGACGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7838:6752..7800+

>mRNA_L-elsbetiae_contig7838.16796.1 ID=mRNA_L-elsbetiae_contig7838.16796.1|Name=mRNA_L-elsbetiae_contig7838.16796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig7838:6752..7800+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCAGATCTGTCTGGACATCCTGCAGAACCAATGGAGCCCGATCTAC
GATATCTGCGCCATCCTCACGTCGATCCAATCCCTCTTGTGCGACCCCAA
CCCGGCATCACCGGCAAATTCGGAGATGGTCAGATCTGTCTGGACATCCT
GCAGAACCAATGGAGCCCGATCTACGATATCTGCGCCATCCTCACGTCGA
TCCAATCCCTCTTGTGCGACCCCAACCCGGCATCACCGGCAAATTCGGAG
GCGTCCCGCCTGTACCAGGAGAACCGCCGGGAGTACAACCGCCGCGTGCG
GGAAGTAGGCGTCCCGCCTGTACCAGGAGAACCGCCGGGAGTACAACCGC
CGCGTGCGGGAAGTAG
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