mRNA_L-elsbetiae_contig7837.16795.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7837.16795.1
Unique NamemRNA_L-elsbetiae_contig7837.16795.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7837.16795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7837contigL-elsbetiae_contig7837:2354..4720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.1936798-CDS-L-elsbetiae_contig7837:2353..24611622816868.1936798-CDS-L-elsbetiae_contig7837:2353..2461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7837 2354..2461 +
1691683873.7363849-CDS-L-elsbetiae_contig7837:2353..24611691683873.7363849-CDS-L-elsbetiae_contig7837:2353..2461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7837 2354..2461 +
1622816868.2048752-CDS-L-elsbetiae_contig7837:4618..47201622816868.2048752-CDS-L-elsbetiae_contig7837:4618..4720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7837 4619..4720 +
1691683873.7487683-CDS-L-elsbetiae_contig7837:4618..47201691683873.7487683-CDS-L-elsbetiae_contig7837:4618..4720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7837 4619..4720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7837.16795.1prot_L-elsbetiae_contig7837.16795.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7837 2354..4720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7837.16795.1

>prot_L-elsbetiae_contig7837.16795.1 ID=prot_L-elsbetiae_contig7837.16795.1|Name=mRNA_L-elsbetiae_contig7837.16795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
RRGTAEGAFYGSGGAAREEREHAAGRGAGRQQPQEQFAGGGGKVLPPETL
RGNRLSGGSESGGEEQASRQ
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mRNA from alignment at L-elsbetiae_contig7837:2354..4720+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7837.16795.1 ID=mRNA_L-elsbetiae_contig7837.16795.1|Name=mRNA_L-elsbetiae_contig7837.16795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2367bp|location=Sequence derived from alignment at L-elsbetiae_contig7837:2354..4720+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAGGGGCACCGCAGAAGGGGCGTTTTACGGGAGCGGGGGAGCAGCGCG
AGAGGAGCGCGAGCACGCCGCCGGGAGGGGGGCAGGCAGACAGCAGCCCC
AGGAGCAGGCGAGTCATGTAGTGTTACTACGATATTGGAGGTAGCCGAGA
ACCGTGAAATGACACAAGATGTCAAACCTGGAGTTTTAAAAAGGTACACC
TTGTGGCTAGTTGGCCAACACAAGGTATACTTTTTTTTTTCTATTGTCTG
CCCATTATTGGATTTTTTCGTCTACCCCACTGGCCCCCCATCCTCCACTT
CTACTCTAGCTAGACGACCCAACCGGGGTCACATGGGAAGGGGGGGTTGG
GCCCCCTCCTGCGGTGCCTGCCTAGGTTTTTTTTATCGCGAGCAGGGTTC
AGCACTCCCCACCCTCGTCAACAATGAAGTCGAAGTAGTATTTTCTCACG
AAATCGCTTTCAATTTTGCCAGGAACGAATGTGAGAAAAAACTCGCTTCG
CTGGGGCTCGAACCCGGGACCTGGTGCATTAGAAGGATGCGTGGATACCA
ACTAGACTGCCGAGGCGACCGGTCCATATGTGGTACCGAACTTCCGCATG
CCTCGCCTACTAAGCCCGACCTCGCATAGAACCTCGGAGGCTGTCCCATG
GCCGCCATCAAAGTAGGGCATAACCCGTGCACAGCGTCAATGGATGTCCA
CATGCTACATGCTCGGGGGTGGAGTAGACGCTCCGCCGTGCAACTACGCG
CGGATGCAGTTTGACCCTCGTTTTACAACAGCAGTTAGTAGTGTGACGGC
GGGGTTATTCAGTTTGGCTTGTTGGGGTAGGGTTTGTAACGCATTTGGTT
TAGGGGGTATCCGACATGATGAAGAAAATGTAAGCACAGGAAGGGCACTT
TTCTCGTGGGTCACTAGAAGGCAGTAAGGCCCTGGTCCCTGACAAAGAGC
CCCGCGGTTTCCGGCCAAAATAAGGTGAACGAGCGGCAAAACAAGATGTA
GCCAGAAGTTGAGTGGCCACGCGAAGGTGTACTGTTGTGTGCTTTTTCGG
CCAAAACTCTTTTTTTGTTCTTGAGTCGAATCGAAAAATAGCTGGTCGTC
AGGTTTGCCTTTCTGGAGCAGTTGTGAGAAGAGGGTGGTATCTTGAGTCG
CAGCAGTATTGGGCGGAAGGAGTCTGCATAGTGCCCATTGTGTACGCATC
TGGCCTGAGTGAGGGTGAACCCCCCCAGCAGCCCACCCAGTGTTTTTCCC
TCTTGTGCCGGGGCTGCCCTTGACTTGTCGAAAGAGATAACGGACCAGAA
GAGGAGACTCAAGGGGTCTTGCAACTGGGTATTTGGGCACCTACCTGGCC
GCACAGCACTTGTAGAGAGGAGAACCCCCCGGGATGACCCTTTGCATTAG
AGAAGGGGAGAGAGGAGAGGTTGGCCGGTGGTGGCCAGGGTGGGTTGACA
GATTTTCGATCCCGTGCAGTGCTTGCTTCAGTCATGGATGTATGTAGACG
GTAGGTAGCTTCTTTCCATCCACCGTATCAGCTAAGGCCAGCTGTTGTGG
AAAGATTAAAGATTGGAATCCGGGGGCCCCACAATATATCGTAGATTCCT
GCACACGGGGGTGAGGGGGGGGGTTTCTGAGCAGGAGTCCGTGGAAAATT
GTCGCTTTTGCCGAGTGCACGCCTCGCCGAAGACGCGTGTGCAAATGTGG
CCTTCGATGCCGTGTGCTCCACTGCTGTGAGCTATTCGCTTCTCGGAGCC
AAGTTTGGGGAGCGGTGGTTCAGTGTGGGTCTCGCACGCTTCGAAACTGA
CAAAATTCCAGTGATGGGTATTTGTTTCTCGGTTCTCTACAATTCGGAAA
GGAGGAGAAGTTCCTACGCGAGAACCGAGAAGCTCCAGTGCAGGAGTTCC
GTCAGATTCAACGCGTGTGAGGCCCACACTTCGCACCACTGCTCCTCAAA
CTTGGCTCCGAGACACGGTCGCACCAATGCAGCACACGGCCTCTTTGATG
GCATTAATATGTAGACTGCAAGCGAGTGTCTGAGCGAGGCGAGGACTCGG
CCGAAACGACCTTGTTCACCGATTCAAGCTGAGAAAACCCTCCACCCCCC
CCTAGCCCAGGATTTTTGATGCTTGAATTCCAGTTCCATGTCAACATGCG
GAAGTCGCTTACTTCCATGATTGCTAAGTGAGTTCGGCCGATATACCGCG
TCTAGCGTCTAACGAAACGCATCAACCGGTCTCATTTCCCACCCGCTCAC
TGTTTTCCCGGGTAGTTCGCTGGTGGCGGCGGAAAAGTCTTGCCGCCCGA
GACTCTTCGGGGTAATCGCCTTTCGGGGGGTTCCGAGAGCGGCGGAGAGG
AACAAGCTTCCAGACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7837:2354..4720+

>mRNA_L-elsbetiae_contig7837.16795.1 ID=mRNA_L-elsbetiae_contig7837.16795.1|Name=mRNA_L-elsbetiae_contig7837.16795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig7837:2354..4720+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAGGGGCACCGCAGAAGGGGCGTTTTACGGGAGCGGGGGAGCAGCGCG
AGAGGAGCGCGAGCACGCCGCCGGGAGGGGGGCAGGCAGACAGCAGCCCC
AGGAGCAGAGAAGGGGCACCGCAGAAGGGGCGTTTTACGGGAGCGGGGGA
GCAGCGCGAGAGGAGCGCGAGCACGCCGCCGGGAGGGGGGCAGGCAGACA
GCAGCCCCAGGAGCAGTTCGCTGGTGGCGGCGGAAAAGTCTTGCCGCCCG
AGACTCTTCGGGGTAATCGCCTTTCGGGGGGTTCCGAGAGCGGCGGAGAG
GAACAAGCTTCCAGACAGTTCGCTGGTGGCGGCGGAAAAGTCTTGCCGCC
CGAGACTCTTCGGGGTAATCGCCTTTCGGGGGGTTCCGAGAGCGGCGGAG
AGGAACAAGCTTCCAGACAG
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