mRNA_L-elsbetiae_contig7835.16793.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7835.16793.1
Unique NamemRNA_L-elsbetiae_contig7835.16793.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Match: D8LG19_ECTSI (Lignostilbene-alpha beta-dioxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG19_ECTSI)

HSP 1 Score: 444 bits (1141), Expect = 1.120e-153
Identity = 205/268 (76.49%), Postives = 243/268 (90.67%), Query Frame = 1 
Query:    1 HPFDGDGMVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRGFSNLPGGPLKNAFRIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDENRPIFCAHPRVDAKRERLVGFGSHNMQETMVYEYDKDFKLIQSRLLKEASGFLHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVVVIPRDASKEIKTIPVSSKFCFHLANAYEDADSGELVVDLAESDFLYLDSEEESDLPVWENI 804
            HPFDGDGMVMAISFS+EGAYFRNR+V+TKGYKKELAAGK+LYRGFSNL GG LKNAF++  KNLANTNVI+WGGMLLALWEGGLP+R+DPKSLDTFGETMLGE+IDENR IF AHPRVDAKRERLVG+G+ N++ET +YEYDK+FKL+QSRL+KEA+G LHDF VT+NY +FFS PV L PLKWVLGL T+ SALKW+G+SKP+++V++PRD SKE+K I V +KFCFH ANA+ED  +GELVVD+ E+DFLYLD EEE+D+PVW+NI
Sbjct:   33 HPFDGDGMVMAISFSKEGAYFRNRYVKTKGYKKELAAGKMLYRGFSNLAGGALKNAFKMTTKNLANTNVIYWGGMLLALWEGGLPHRLDPKSLDTFGETMLGETIDENRKIFSAHPRVDAKRERLVGYGTKNLKETRLYEYDKNFKLLQSRLVKEANGLLHDFGVTDNYTIFFSAPVALEPLKWVLGLGTLSSALKWQGDSKPARMVIVPRDPSKEVKIINVPAKFCFHFANAFEDPKNGELVVDVVEADFLYLDQEEEADVPVWDNI 300
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BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Match: W7U1Q0_9STRA (Retinal pigment epithelial membrane protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1Q0_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.480e-68
Identity = 123/277 (44.40%), Postives = 177/277 (63.90%), Query Frame = 1 
Query:    1 HPFDGDGMVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRGF--SNLPGGPLKNAFRIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDENRPIFCAHPRVDAKRERLVGFGSH---NMQETMVYEYDKDFKLIQSRLLKEASGF--LHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVVVIPRD-ASKEIKTIPVSSKFCFHLANAYEDADSGELVVDLAESDFLYL-DSEEESDLPVWENI 804
            HPFDGDGM+ A++F +  A+FRNRFV T+GYK+E  + K+ YRG   +  PGG L N F + RKN+ANTNVI WG  LLALWEGGLP+ MDP +L T GE+ L   +  N+ + CAHPR D   +R V F +       +  +YE+D DFKL+  R  +   GF  LHD  +T +YYVFF  P+ L PL W+LG   + S ++++ + +P+   +IPR+  S+ +  IPV   F FH +NA++D+ +GE+VVD+     LYL D++  +  P+W ++
Sbjct:  110 HPFDGDGMISALTFQDGRAFFRNRFVETEGYKREQKSQKIEYRGTFGTQKPGGWLANIFDMRRKNVANTNVIFWGNRLLALWEGGLPHLMDPITLQTLGESRLANVLKRNQNL-CAHPRYDPATDRYVFFSTDPDPRKTKITLYEFDTDFKLVAERS-ENLQGFSLLHDMVITPSYYVFFKAPLDLQPLPWLLGRTGVASCIRFQ-DDQPAVAYLIPRNNPSRPMVEIPVDPHFSFHFSNAFDDSSTGEVVVDIIRVPKLYLTDTKGVTGDPIWRSV 383
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BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Match: A0A351L7R2_9CYAN (Dioxygenase n=1 Tax=Cyanobacteria bacterium UBA11371 TaxID=2055770 RepID=A0A351L7R2_9CYAN)

HSP 1 Score: 219 bits (557), Expect = 1.660e-64
Identity = 114/243 (46.91%), Postives = 156/243 (64.20%), Query Frame = 1 
Query:    1 HPFDGDGMVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRGF--SNLPGGPLKNAFRIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDENRPIFCAHPRVDAKRERLVGFG-SHNMQETM-VYEYDKDFKLIQSRLLKEAS-GFLHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVVVIPRDASKEIKTIPVSSKFCFHLANAYEDAD 714
            HPFDGDGM+  I+F +  A+F NRFVRTKGY++E AAG++LYRG   +  PGG L NAF + +KN+ANTNVI+WG  LLALWE   PYR+DP +L+T G   L + + E    F AHPR+D K  RLV F     +  T+ +YE+D   KL+           F+HDFA+T NY +FF  PV  NPL +VLGL+     +K+  N KP+++V+IPR+  + ++   + + F FH ANA+E  D
Sbjct:   70 HPFDGDGMIAKIAFKDGRAHFSNRFVRTKGYQEEQAAGRILYRGVFGTQKPGGWLANAFDLRQKNIANTNVIYWGDKLLALWEAAEPYRLDPYTLETLGLEYL-DGVLEPGDAFSAHPRIDGKTGRLVNFSIKPGLSSTITIYEFDPSGKLLTKHAHSVPGFAFIHDFAITPNYCIFFQNPVTFNPLPFVLGLRGAAECIKFNSN-KPTQIVIIPRNPKQPMQLREIQAGFVFHHANAFEQGD 310
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BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Match: A0A7S1ULQ6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1ULQ6_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.000e-63
Identity = 113/275 (41.09%), Postives = 166/275 (60.36%), Query Frame = 1 
Query:    1 HPFDGDGMVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRG-FSNLPGGPLKNAFRIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDENRPIFCAHPRVDAKRERLVGFGS-----HNMQETMVYEYDKDFKLIQSRLLK-EASGFLHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVVVIPRDASKEIKTIPVSSKFCFHLANAYEDADSGELVVDLAESDFLYLDSEEESDLPVWENI 804
            HPFDGDGM+ AI+  + GA++RN+FVRT GYKKEL   K+ YRG F     G   N   +  KNLANT+V+ W     ALWEGG P+++DP SL TFGE+ LG ++   +  F AH ++D KRERL  F +             +E+DKDF ++  R ++  A    HD A+T+NY+VF   PV  +P+ +VLG K+    ++++G++ PS+ +++PRD  KE   I   + F FH ANA+EDAD G +V+D   + ++ L      + P+W  +
Sbjct:  100 HPFDGDGMIAAITVKDGGAFYRNKFVRTPGYKKELRENKICYRGTFGTKKKG--WNLLDLRVKNLANTHVLFWADRFFALWEGGKPFKVDPASLSTFGESQLGGAL-RPKDNFAAHYKIDPKRERLCNFCAVPDPPSGGSTITTFEFDKDFNMVYRRDVQIPAFAVTHDTAITDNYFVFAVAPVKFDPVPFVLGQKSAAQCIEYDGDNSPSQFILVPRDPEKEETIIEAPAHFNFHNANAFEDAD-GNVVLDQVNTPYMILTDSSSGEEPIWNTV 370
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BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Match: A0A2W1JRU8_9CYAN (Dioxygenase n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JRU8_9CYAN)

HSP 1 Score: 216 bits (550), Expect = 1.100e-63
Identity = 118/252 (46.83%), Postives = 162/252 (64.29%), Query Frame = 1 
Query:    1 HPFDGDGMVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRGF--SNLPGGPLKNAFRIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDENRPIFCAHPRV--DAKRERLVGFG--SHNMQETMVYEYDKDFKLIQSRLLK-EASGFLHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVVVIPRDASKEIKTIPVSSKFCFHLANAYEDADSGELVVD 735
            HPFDGDGM+ AI+F +  A+FRNRFVRT+GY  E AAGK+LYRG   +  PGG + NAF +  KN+ANTNVI+WGG LLALWE   PYR+DP +L+T G   L   +    P F AHPR+       RLV F   S  +    VYE+D+  K +  R        F+HDFAVTE+YY+FF  PV LNP  +++GLK  G  L+++  S+P+K+ +IPRDA + ++ +   + F FH AN+++    G+++VD
Sbjct:   65 HPFDGDGMICAITFDQGRAHFRNRFVRTEGYVAEQAAGKILYRGVFGTQKPGGWMANAFDLNFKNIANTNVIYWGGKLLALWEADQPYRLDPATLETIGLDDLSGLLKPKTP-FSAHPRIVPGTDGSRLVNFSVQSGPITSITVYEFDEAGKCVAERKHTIPGFAFIHDFAVTEHYYIFFQNPVTLNPFPFLVGLKGAGECLEFQP-SQPTKIWLIPRDAQQPVQKLTTDACFVFHHANSFDQ--DGKVIVD 312
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BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Match: UPI00177ECBD9 (carotenoid oxygenase family protein n=1 Tax=Microcoleus sp. FACHB-SPT15 TaxID=2692830 RepID=UPI00177ECBD9)

HSP 1 Score: 216 bits (550), Expect = 1.230e-63
Identity = 115/249 (46.18%), Postives = 156/249 (62.65%), Query Frame = 1 
Query:    1 HPFDGDGMVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRGF--SNLPGGPLKNAFRIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDENRPIFCAHPRVDAKRER------LVGFGSHNMQETMV--YEYDKDFKLIQSRLLKEAS-GFLHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVVVIPRDASKEIKTIPVSSKFCFHLANAYEDAD 714
            HPFDGDGM+ AI+F    A+FRNRF+RT+GY KE  AGK+LYRG   +  PGG L NAF    KN+ANTN+I+WGG LLALWE   P+R+DPK+L T G+  L   ++E    F AHPR+D   E+      LV F       T +  YE+D   KL+ S+        F+HDFA+T NY +FF  PV  NP+ + LGL+  G  +K+E   KP++++VIPR++ + ++ +   S F FH ANA+E  D
Sbjct:   71 HPFDGDGMICAIAFDNGRAHFRNRFIRTEGYLKEQQAGKILYRGVFGTQKPGGWLANAFDFQLKNIANTNIIYWGGKLLALWEAAEPHRLDPKTLGTLGKDHLDGLLEEGN-AFAAHPRIDPNCEQDDGSPVLVNFAIKPGLSTTITIYEFDPQGKLLHSQDRSVPGFAFIHDFAITPNYCLFFQNPVSFNPIPFALGLRGAGECVKFEPK-KPTRILVIPRNSKEPVQILETQSGFVFHHANAFEQDD 317
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BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Match: M2W0Q7_GALSU (9-cis-epoxycarotenoid dioxygenase, neoxanthin cleavage enzyme-like protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W0Q7_GALSU)

HSP 1 Score: 218 bits (554), Expect = 2.470e-63
Identity = 114/260 (43.85%), Postives = 161/260 (61.92%), Query Frame = 1 
Query:    1 HPFDGDGMVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRGF--SNLPGGPLKNAFRIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDENRPIFCAHPRVDAKRERLVGFGSH---NMQETMVYEYDKDFKLIQSRLLK-EASGFLHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVVVIPRDASKEIKTIPVSSKFCFHLANAYEDADSGELVVDLAESDFLYL 762
            HP+DGDGMV AI+F ++  +FRNRFVRTKGY KE AA ++L+RG   + +PGG LKN   I  KN+ANTNV+ W   L ALWEGGLPY +DP +L T GE     SI  N   F AHP+++    RL+GF S       +   YE+D++F L+  R ++    GF HDFA+T +YY+ F  P+   P K+VLGL +    + +    +P+K+ ++PR +S  +K + V S F FH ANA+E+    E+ +D+     L+L
Sbjct:  133 HPWDGDGMVAAITFDQKKIWFRNRFVRTKGYMKESAANRILFRGTFGTQIPGGWLKNVLNIQMKNVANTNVLLWNRRLWALWEGGLPYELDPGNLITLGEKRFDTSIMSN---FTAHPKIETDTGRLIGFSSQLGVQSSQLTFYEWDENFTLLSQRKVRIPGFGFYHDFAITPHYYILFQGPIDFTPWKFVLGLCSAAECMSFR-KERPAKLFLVPRHSSAPVKELHVKSGFVFHFANAFEEEQ--EMNIDVVRVPDLFL 386
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BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Match: U9WBS4_9CYAN (Dioxygenase n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9WBS4_9CYAN)

HSP 1 Score: 214 bits (546), Expect = 4.510e-63
Identity = 120/256 (46.88%), Postives = 165/256 (64.45%), Query Frame = 1 
Query:    1 HPFDGDGMVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRGF--SNLPGGPLKNAFRIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDENRPIFCAHPRVDAKRER------LVGFG-SHNMQETM-VYEYDKDFKLIQSRLLK-EASGFLHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVVVIPRDASKEIKTIPVSSKFCFHLANAYEDADSGELVVD 735
            HPFDGDGM+ AIS SE  A+FRNRFVRT+GY KE AAGK LYRG   +  PGGPL NAF +  KN+ANTNV++WG  LLALWE   P+R+DP++L+T G   L + + ++   F AHPR+D   +R      LV FG    +  T+ +YE+D   +L+ +         FLHDFA+T NY +FF  PVG NP+ ++ G+K     +++    +P++ +VIPRD +  I+TI +   F FH ANA+E AD G+L +D
Sbjct:   65 HPFDGDGMITAISISEGRAFFRNRFVRTEGYIKEKAAGKPLYRGVFGTQKPGGPLANAFDLRLKNIANTNVLYWGDKLLALWEAAEPHRLDPQTLETLGLDDL-DGVLKSGGAFSAHPRIDPSCDRTKNQPCLVNFGVKTGLSSTITLYEFDPKGRLVHTHQRNIPGFAFLHDFAITPNYCIFFQNPVGFNPVPYLAGVKGAAECIQFNAK-QPTRAIVIPRDGTSPIQTIDLQPCFVFHHANAFE-AD-GKLYLD 316
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BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Match: A0A433MY21_CHLFR (Dioxygenase n=2 Tax=Chlorogloeopsis fritschii TaxID=1124 RepID=A0A433MY21_CHLFR)

HSP 1 Score: 213 bits (543), Expect = 8.670e-63
Identity = 121/254 (47.64%), Postives = 157/254 (61.81%), Query Frame = 1 
Query:    1 HPFDGDGMVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRGF--SNLPGGPLKNAFRIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDENRPIFCAHPRVDAKRER----LVGFGSHN--MQETMVYEYDKDFKLIQSRLLKEAS-GFLHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVVVIPRDASKEIKTIPVSSKFCFHLANAYEDADSGELVVD 735
            HPFDGDGMV AISFS   A+FRNRFVRT+GY  E AAG++LYRG   +  PGG L NAF + +KN+ANTN+I+WGG LLALWE   PYR++P++L+T G   L   + ++ P F AHP +D   E     LV F      +    VYE D   K++Q    +     F+HDFA+T NY +FF  PV  NPL +VLG +     +K++    P+K+ VIPRD S   + IP    F FH ANA+E  D  E+VVD
Sbjct:   51 HPFDGDGMVCAISFSNGRAHFRNRFVRTEGYGAEQAAGRMLYRGVFGTEKPGGWLANAFDLRKKNVANTNIIYWGGKLLALWEASHPYRLEPQTLETLGIETLDGVLGKDSP-FAAHPMIDPGDESREPCLVTFAIKPGPLTTITVYEIDLTGKVVQKHDHQVPGFAFIHDFAITPNYCLFFQNPVSFNPLPYVLGFRGAAECIKFQ-EQNPTKIWVIPRDRSHPAQCIPADPCFVFHHANAFEQDD--EIVVD 300
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BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Match: A0A3C0N9F8_9CYAN (Dioxygenase n=1 Tax=Cyanobacteria bacterium UBA8543 TaxID=2055766 RepID=A0A3C0N9F8_9CYAN)

HSP 1 Score: 214 bits (544), Expect = 9.990e-63
Identity = 118/257 (45.91%), Postives = 166/257 (64.59%), Query Frame = 1 
Query:    1 HPFDGDGMVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRGF--SNLPGGPLKNAFRIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDENRPIFCAHPRVDAKRER------LVGFG-SHNMQETM-VYEYDKDFKLI--QSRLLKEASGFLHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVVVIPRDASKEIKTIPVSSKFCFHLANAYEDADSGELVVD 735
            HPFDGDGMV AI+F++  A+FRNRFVRT+G+  E  AGKLLYRG   +  PGG L NAF    KN+ANTN+I+WGG LLALWE   P+R+DPK+L+T G+  L + + E    F AHPR+D    +      LV F     +  T+ +YE++   KL+  QSR +     F+HDF +T NYY+FF  PV  NP+ ++LG +  G  +K++ + KP+++VVIPR++ + ++T+   S F FH ANA+E    G L +D
Sbjct:   71 HPFDGDGMVCAIAFNQGRAHFRNRFVRTEGFLAEQKAGKLLYRGVFGTQKPGGWLANAFDFQLKNIANTNIIYWGGKLLALWEAAEPHRLDPKTLETLGKDYL-DGVLEQGNAFAAHPRIDPSCIQDDGTPCLVNFAIKPGLSSTITIYEFNPAGKLLRRQSRSIP-GFAFIHDFVITPNYYLFFQNPVNFNPIPFLLGFQGAGECVKFQPD-KPTRIVVIPRNSQEPMQTLETQSGFVFHHANAFEQ--DGRLCID 322
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7835.16793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG19_ECTSI1.120e-15376.49Lignostilbene-alpha beta-dioxygenase n=1 Tax=Ectoc... [more]
W7U1Q0_9STRA2.480e-6844.40Retinal pigment epithelial membrane protein n=2 Ta... [more]
A0A351L7R2_9CYAN1.660e-6446.91Dioxygenase n=1 Tax=Cyanobacteria bacterium UBA113... [more]
A0A7S1ULQ6_9STRA1.000e-6341.09Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2W1JRU8_9CYAN1.100e-6346.83Dioxygenase n=1 Tax=Acaryochloris thomasi RCC1774 ... [more]
UPI00177ECBD91.230e-6346.18carotenoid oxygenase family protein n=1 Tax=Microc... [more]
M2W0Q7_GALSU2.470e-6343.859-cis-epoxycarotenoid dioxygenase, neoxanthin clea... [more]
U9WBS4_9CYAN4.510e-6346.88Dioxygenase n=1 Tax=Leptolyngbya sp. Heron Island ... [more]
A0A433MY21_CHLFR8.670e-6347.64Dioxygenase n=2 Tax=Chlorogloeopsis fritschii TaxI... [more]
A0A3C0N9F8_9CYAN9.990e-6345.91Dioxygenase n=1 Tax=Cyanobacteria bacterium UBA854... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7835contigL-elsbetiae_contig7835:3..5704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score426.0
Seed ortholog evalue1.3e-116
Seed eggNOG ortholog2880.D8LG19
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGsCOG3670@1,KOG1285@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionCarotenoid oxygenase
Ec32 orthologEc-21_004930.1
Exons7
Model size804
Cds size783
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7835.16793.1prot_L-elsbetiae_contig7835.16793.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7835 24..5704 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.0564504-UTR-L-elsbetiae_contig7835:2..231622816868.0564504-UTR-L-elsbetiae_contig7835:2..23Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7835 3..23 +
1691683873.637538-UTR-L-elsbetiae_contig7835:2..231691683873.637538-UTR-L-elsbetiae_contig7835:2..23Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7835 3..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.06911-CDS-L-elsbetiae_contig7835:23..771622816868.06911-CDS-L-elsbetiae_contig7835:23..77Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 24..77 +
1691683873.6489017-CDS-L-elsbetiae_contig7835:23..771691683873.6489017-CDS-L-elsbetiae_contig7835:23..77Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 24..77 +
1622816868.0804067-CDS-L-elsbetiae_contig7835:758..8421622816868.0804067-CDS-L-elsbetiae_contig7835:758..842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 759..842 +
1691683873.6588714-CDS-L-elsbetiae_contig7835:758..8421691683873.6588714-CDS-L-elsbetiae_contig7835:758..842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 759..842 +
1622816868.0901077-CDS-L-elsbetiae_contig7835:1479..15681622816868.0901077-CDS-L-elsbetiae_contig7835:1479..1568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 1480..1568 +
1691683873.670499-CDS-L-elsbetiae_contig7835:1479..15681691683873.670499-CDS-L-elsbetiae_contig7835:1479..1568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 1480..1568 +
1622816868.1008766-CDS-L-elsbetiae_contig7835:2668..28251622816868.1008766-CDS-L-elsbetiae_contig7835:2668..2825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 2669..2825 +
1691683873.679162-CDS-L-elsbetiae_contig7835:2668..28251691683873.679162-CDS-L-elsbetiae_contig7835:2668..2825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 2669..2825 +
1622816868.1124778-CDS-L-elsbetiae_contig7835:3778..38951622816868.1124778-CDS-L-elsbetiae_contig7835:3778..3895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 3779..3895 +
1691683873.6876998-CDS-L-elsbetiae_contig7835:3778..38951691683873.6876998-CDS-L-elsbetiae_contig7835:3778..3895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 3779..3895 +
1622816868.1229832-CDS-L-elsbetiae_contig7835:4977..51091622816868.1229832-CDS-L-elsbetiae_contig7835:4977..5109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 4978..5109 +
1691683873.6996117-CDS-L-elsbetiae_contig7835:4977..51091691683873.6996117-CDS-L-elsbetiae_contig7835:4977..5109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 4978..5109 +
1622816868.1333451-CDS-L-elsbetiae_contig7835:5554..57041622816868.1333451-CDS-L-elsbetiae_contig7835:5554..5704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 5555..5704 +
1691683873.7138176-CDS-L-elsbetiae_contig7835:5554..57041691683873.7138176-CDS-L-elsbetiae_contig7835:5554..5704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7835 5555..5704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7835.16793.1

>prot_L-elsbetiae_contig7835.16793.1 ID=prot_L-elsbetiae_contig7835.16793.1|Name=mRNA_L-elsbetiae_contig7835.16793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=261bp
MVMAISFSEEGAYFRNRFVRTKGYKKELAAGKLLYRGFSNLPGGPLKNAF
RIARKNLANTNVIHWGGMLLALWEGGLPYRMDPKSLDTFGETMLGESIDE
NRPIFCAHPRVDAKRERLVGFGSHNMQETMVYEYDKDFKLIQSRLLKEAS
GFLHDFAVTENYYVFFSPPVGLNPLKWVLGLKTMGSALKWEGNSKPSKVV
VIPRDASKEIKTIPVSSKFCFHLANAYEDADSGELVVDLAESDFLYLDSE
EESDLPVWENI
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mRNA from alignment at L-elsbetiae_contig7835:3..5704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7835.16793.1 ID=mRNA_L-elsbetiae_contig7835.16793.1|Name=mRNA_L-elsbetiae_contig7835.16793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5702bp|location=Sequence derived from alignment at L-elsbetiae_contig7835:3..5704+ (Laminarionema elsbetiae ELsaHSoW15)
CACCCGTTTGACGGGGACGGCATGGTGATGGCCATCAGCTTCTCTGAGGA
GGGGGCGTACTTCAGAAACAGATTCGTGAGTCGAAAAAAAGGGAGGAAGG
AAAAACACTTTTTTTTTTTTTCTTTCTTCTTTTTCACATTTATTTATTTC
CAGTGCTCGATGGGGCGCTCCTCGCCTAGCCACGAGGGCACCTTGCCAGA
GAACTGAACCGTCCATGGTCACACAGAAGGGTTCCTCTCCCTGAGGCGCC
CACACTCCCAGGGGAGGTTTGAGTTGATCCAGGACGGCGTCGTGTGGCAG
CTTCGCGGTCAAAATATACTAATACTGCTGTATCCCCCGGGGGAGGGGAA
TAGAGCATGTACTTCTGTACCTTTTCTTGGGTATAAGTTAGCCTGTGACC
ACGGGAATTGACCGCATCAAGTGTTGGATTCGTACGGACATTGAGAGGTA
CTGGGTGGAGAGATCGGAACGATTTTCAATGTGAAGACAACATACATACA
TTCTATGTGTCGAAATTTACGAACCCGCTAAATGGAACGAACGCGTTTTG
GTGGCCAGTTTTTCCTGCTCCATCTTTTGGCCAATTGCTTCACTTACATA
AGTATGTCGGTCGACATTTCAGGAGCTGACTCCTCTCTTTTTTGATCGAA
ACCTTTTCTGCTTTTATGTATGTAACATACTACATGTCGGTCGACATTTC
AGGAGCTGAATCCAATTTTTTTATCGAAAAAAAAAAACTGCTTTCGGACC
CAACAGGTCAGGACCAAGGGCTACAAGAAAGAGCTCGCGGCCGGAAAGCT
GCTGTACAGGGGCTTCAGCAACCTCCCGGGGGGCCCGCTGGTGGGTTCAA
CCTCTCCCTTGCTCGCTTTTGCTTGGCCTCCACACACAAAACTTGTGAAT
TACTTCGACTTCATTGTTGACGAGGGTGGGGAGTGCTGAACCCTGCCTTC
TCGCGATGAAAACATAACAGGCAGGCACCGCAGGAGGGAGTCCCCCCTCC
TGTGTGACCTCGGTTGGGTCGTCTAGCTAGTCGTAGTAGTGGAGGAAGGG
GCCCAGTGGGGTAGACGACAACTATGCCAATGATGGGAGGAAAAAAAAAA
AAATAAGAATGTGAAGGGATCACGTCCACTGACTTCGCGCTGGCGCATTC
AGCCTTGGGACGGAATCGAGTGTGCATGTGTTATGCATGACGACTTACCT
ACTTGTGGTACAATAGGCTCGGGTTCACCTCGCGTTGGGCCCGATACATA
TATATATATATTTTTTTTTTAGGGGCATGGCCCTTTTTCCTGTCCAGCGT
CTCCAAGAGGTGGTGCGAGCGAGTCGTATGTGTGTAAACTGTGTTACCAT
GTTTGTATGAATGCATGCATGTATGTATGTATGTATGTGTGTATGTGTGG
TCTTACGAGTTATCATGTACGGCGTGCATGTACATGTATGCATGCATGTA
TGCACACATACACACGACGGTTGGCAGAAAAACGCCTTCAGAATCGCGCG
AAAAAACCTGGCGAACACGAACGTGATCCACTGGGGGGGGATGCTGCTGG
CGCTGTGGGAGGGAGGGTGAGTGTTGTCTTTCTCGTATTTTTTTTTCCTT
TCTTTTTCTGGTGTTTTTTTTCTTCTTATTTTTTTTTCGGTGCGCCGCAG
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGT
GTGTGCGGAAAGGGGTATTTGCGTGGTTCAGTGACGTCATACCGCCGAGC
TTTTGGTCCTGCGCCGATGCATGTCTGGCGCTGTCTCCCTTCCTCGTGCG
CCATACATGCATACATACATACACACATTTAAGTATATGTCTATACATAA
GCAAAATTGTTTCTGTCACTTTCCTGTCAAACGGGGGCCTTCATTTTGGC
AGCGTTTTTGTGTCAAGCCTCTCGAGTGACGTGGGCTGCCGGGGGGGGCT
GCTGCACGGGCAGTTGAAACGAGGAACATAAGTGGGATTAAGCAGCTGCC
GGGCTGTTGCTGTGAGACTCGTCGGAGAAAAAAAAGTGGGCACTTACGTA
CTGTTGTAGACCGATCCCAGAAGTAGATGCTGCACCGGACCGGGCGTCTC
TGCTGCCACTGGACCGGAAGCTACGCTCTTTCGGCGCGGGGCTGTTCACT
TCCGACCCAACTCCGACAGGCGAAGAGCGCACTACTCTCATTGTGGATAC
AGCAGTATGTACACCCCAACAGCAGCAACAAGTCGAGCCTCCAGCTTCGT
GGCAGCTATTGCATCGCCGTGCTTCTCTGGCTGCTCTCTCTGTGTTCCCT
CCGGCCGATTTGCGAGGCATTTTTGCGGCTAAATATGATATACCGAAGTG
ATTTTGGCTCTAGGACGCATGCCCTGCCTTGCCGCAAGTGTAGCGTACAT
ACGTATGTGCTGTGCTGCGGTATCTCCTGCGTCACCCCCACCCCCCTGCA
TCATCGCTACTGCTGCTATTGTTGTGAGCACAGTAGTCAGCAGTCCGAAA
TATTAGCATGTGTGCCATACACTTCTTTCTATCTTTAAATATACACATAT
TTTGATACGGAAGTGCGTGTATGTTTTGCCAATTCACCACTTTTTACAGG
ACTGCTGTAGTTCCAGCCTTTGTAACCAGCCCTCTCACCGTTTTCCAATC
CCTTAAAAAAAAAAAGACTGCCGTACCGGATGGACCCGAAGAGCCTGGAC
ACCTTCGGAGAGACCATGCTCGGGGAATCAATCGACGAGAACCGCCCGAT
ATTCTGTGCTCACCCGAGGGTGGACGCCAAGAGGGAGAGGCTCGTCGGCT
TCGGCTCTCACAACATGCAAGAGGTGCGTGCGTGGAGCAGATGCAGATGC
TCTCGCGGTTACGTCCGTAAATATTGATATACGCGGCGCGCTCGGGGCGG
GTGAACGGGCTCATATCACACGGTGCCCTGCTCGTGATAAAAAAACATAA
CATGCCGGCAACGCAGGAGGGGTGGGGCCTCCCTCCTGTGTGAGACCCCG
GTTGGGTCGTCTAGCTAGTCGTAGTGGAGTATGGGGGCCAGTGGAGCGGA
CGACGCGTACGTAAAGCTAATAATGGGAGGGGAAAATATGAAACAAACGG
GGACCGTCACCTACATGCATCCGTGTCTATATTATACATACTTCGTATGG
TATGTGTGTGTTTTTTTTGTTTTTTTTCTTCTTGACATTTATTTCCGGTG
CTCGATGGGCTCCCTGTCACGACGACATCTTGCCAGAGAGTACTGAACCG
TGGTCACACAGAAGGGTTCCTTTCCCCAAGGCCCCCACTCGCCCCCCCCC
CCGCCTGCGGTGCTTGCCTGAGATTTTTGTCGCGAGCAGGGTTCAGCCGT
CGTCCCTTTCCCTCGTCGACGGTGAGGTCGAAGTTTGTGTAAATACACAC
GCTACATAAAGCGCTATCCACTGACAGGGACGGAAACATATGTGTAAGAC
CTCCACGACCACGTTTCGAAGATCAGTATTGTGTGCTTTTTGCCTGTCTC
GCGGGGTACTTGTGTTCATGTGTGAATGCATGCATACACACGTCTCTCGA
GTTGTTTGGTGTGTATTCCCTCTCTTTGGTGGAACAGCAGCCAGTGCCGA
GTCCAACCAGCGATCGAGCGAGAAAAATAGAAATAAAAAAGGGGTTTGTA
AATAGTACAAGTACTTTGCTCGCATGAAGGCATAATCAAAAAGGACGTAC
TTGCTGCTGTGTACGTAACCGCCATCAACCAGCCAATCACAAGCCCTTGT
TGCCTGCCCTTCACCAAAACACACAGACCATGGTGTACGAGTACGACAAG
GACTTCAAGCTCATCCAGTCCCGACTGCTGAAGGAGGCCAGCGGCTTCCT
GCACGACTTTGCGGTCACCGAAAACTACTACGTCTTCTTCAGCGTGAGTT
ATTAATTATAGACTAGTCACCTCAGGGTTCTAAAGCTCCATTATACCATA
CATACGTGTGTACCTCGACAGGTGTTGATTGAGGTGGTGGAAGGCTACAC
ACAGACCTGAAGAACTTTTTTTTCTTCATTTTTTGCTTCCCGAAAAGGCA
AACTATTTAGATGAAACGACTTTTTTTTTCTTTTATGTATTAAATATACT
ACTGTAGCATCGTTGTTCACCACTGTGTTCGTGGATCAATGTGGTCATTT
TGTTTTTGTCCGGGTTTGTTTTGCCCTCCGAAACGTCACAGCTTCGTTCT
GCTTGTCTCGTGTTTGCCCGCGCGGTGAAACTCGTCCGACGCACCTGTGT
ACATTCCTCTACCGTACACTAGATTGCCTAGGGTCTGTAGGTTAACCCCA
GGCTGCTTCCTTTAGTTTTGTTTTTGTATTAGTTGTGGGTGGGTGTGCAC
TCGCTACATATATGCATAGTCTATGGCTTGTTTCCAGAGGGAGATACATG
CAGACGGGAGCGCGAAAAAGCACGCGTATCTGATCTGCTGTGCACACCGC
TCTCTCTTTCTCGCCAGAGAGCGACGCACGACAAAGACGACTCTCTCACT
GTTGCGCTAGCGCTGGGCAGAGTGGGTTGCATGCACATATTCCACTTCTT
GCTCTGCCTTATATAGCTTATCTACGCTCGACTGGGGCGCGGCCAGCTGC
TGCCTGTGCGGGGTATAAGCACGCGGTGACTCCCTCGACCTCATCCGCTC
TCTCTCTACTTGCGTGTGGTGTTGTCATCTTTCTTCACTGCTGTACACAA
TGCATTTGTTTTTTTTTGTCTCTACAACACACCTCCACCACGTATGTAAG
CTTTTTGGACCTTCTATCGTGTGTGTGTGTTTGCTTTTTCATGTTCTCGC
TGGTCTCTCTTTTTTCTTGTCCCCGTCGTATCTCTCTTCGTACGCACATG
TATGTAGCCGCCCTTATTACATACACCTATCTCCCTGTTGTAAGGGCCCA
CTCTCTCCTCTCTTGTAATTTGTTTCTGTGGGGTGTATCGTTGTGTTTTT
TTGCATGACTCCCCCCCCCCCCCAGCCACCCGTGGGCCTGAACCCTCTCA
AGTGGGTTCTCGGGCTCAAGACGATGGGCTCGGCGCTCAAGTGGGAGGGG
AACAGCAAGCCTTCCAAGGTCGTCGTCATCCCGCGGGACGCTTCGAAGGA
GATAAAGGTGATTTACACCGAATCTGCCGCTCTCGTTGCCGCTGCCGTTG
CTGCTGCCGCCGCCGCCGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCC
GTGTCACGACAATCTGGATTTCGCTTGCCAATGCGGGGATAGTCATGTCA
TGGTGTCTGTCATCCACCGAACATTATTGTGAATATTATATTTATTTTCG
AACTGCATGCGTACGTTGGAGCACGGCGTATGTAGCACGGCGTGGCACCT
CGCACGGCGTGGCACCTGGCACGGCATGCGGTATGGCACATACATACTGC
TGTTGGTCGAGGCGATCAATGCCCCCCCCCCCCCCCCCCAGCTACGCCCC
GCCCCGCCCCGCCTCCACCGGTCCCTTGTACGTGCTAAATGTGTGTCCAC
GGGTTTCCATTTTTGTGCTTTATTTTCGTTCACACCGCCGTGCTGCATGC
AGACAATCCCCGTTTCCTCCAAGTTCTGCTTCCACCTGGCAAACGCCTAC
GAGGACGCCGACAGCGGCGAGTTGGTGGTGGACCTGGCCGAGTCGGACTT
CCTCTACCTGGACAGCGAGGAGGAGTCCGACCTGCCGGTCTGGGAGAACA
TC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7835:3..5704+

>mRNA_L-elsbetiae_contig7835.16793.1 ID=mRNA_L-elsbetiae_contig7835.16793.1|Name=mRNA_L-elsbetiae_contig7835.16793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1566bp|location=Sequence derived from alignment at L-elsbetiae_contig7835:3..5704+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGATGGCCATCAGCTTCTCTGAGGAGGGGGCGTACTTCAGAAACAG
ATTCATGGTGATGGCCATCAGCTTCTCTGAGGAGGGGGCGTACTTCAGAA
ACAGATTCGTCAGGACCAAGGGCTACAAGAAAGAGCTCGCGGCCGGAAAG
CTGCTGTACAGGGGCTTCAGCAACCTCCCGGGGGGCCCGCTGGTCAGGAC
CAAGGGCTACAAGAAAGAGCTCGCGGCCGGAAAGCTGCTGTACAGGGGCT
TCAGCAACCTCCCGGGGGGCCCGCTGAAAAACGCCTTCAGAATCGCGCGA
AAAAACCTGGCGAACACGAACGTGATCCACTGGGGGGGGATGCTGCTGGC
GCTGTGGGAGGGAGGAAAAACGCCTTCAGAATCGCGCGAAAAAACCTGGC
GAACACGAACGTGATCCACTGGGGGGGGATGCTGCTGGCGCTGTGGGAGG
GAGGACTGCCGTACCGGATGGACCCGAAGAGCCTGGACACCTTCGGAGAG
ACCATGCTCGGGGAATCAATCGACGAGAACCGCCCGATATTCTGTGCTCA
CCCGAGGGTGGACGCCAAGAGGGAGAGGCTCGTCGGCTTCGGCTCTCACA
ACATGCAAGAGACTGCCGTACCGGATGGACCCGAAGAGCCTGGACACCTT
CGGAGAGACCATGCTCGGGGAATCAATCGACGAGAACCGCCCGATATTCT
GTGCTCACCCGAGGGTGGACGCCAAGAGGGAGAGGCTCGTCGGCTTCGGC
TCTCACAACATGCAAGAGACCATGGTGTACGAGTACGACAAGGACTTCAA
GCTCATCCAGTCCCGACTGCTGAAGGAGGCCAGCGGCTTCCTGCACGACT
TTGCGGTCACCGAAAACTACTACGTCTTCTTCAGCACCATGGTGTACGAG
TACGACAAGGACTTCAAGCTCATCCAGTCCCGACTGCTGAAGGAGGCCAG
CGGCTTCCTGCACGACTTTGCGGTCACCGAAAACTACTACGTCTTCTTCA
GCCCACCCGTGGGCCTGAACCCTCTCAAGTGGGTTCTCGGGCTCAAGACG
ATGGGCTCGGCGCTCAAGTGGGAGGGGAACAGCAAGCCTTCCAAGGTCGT
CGTCATCCCGCGGGACGCTTCGAAGGAGATAAAGCCACCCGTGGGCCTGA
ACCCTCTCAAGTGGGTTCTCGGGCTCAAGACGATGGGCTCGGCGCTCAAG
TGGGAGGGGAACAGCAAGCCTTCCAAGGTCGTCGTCATCCCGCGGGACGC
TTCGAAGGAGATAAAGACAATCCCCGTTTCCTCCAAGTTCTGCTTCCACC
TGGCAAACGCCTACGAGGACGCCGACAGCGGCGAGTTGGTGGTGGACCTG
GCCGAGTCGGACTTCCTCTACCTGGACAGCGAGGAGGAGTCCGACCTGCC
GGTCTGGGAGAACATCACAATCCCCGTTTCCTCCAAGTTCTGCTTCCACC
TGGCAAACGCCTACGAGGACGCCGACAGCGGCGAGTTGGTGGTGGACCTG
GCCGAGTCGGACTTCCTCTACCTGGACAGCGAGGAGGAGTCCGACCTGCC
GGTCTGGGAGAACATC
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