mRNA_L-elsbetiae_contig7826.16781.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7826.16781.1
Unique NamemRNA_L-elsbetiae_contig7826.16781.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Match: D8LQP9_ECTSI (DUF1115 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP9_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 1.690e-108
Identity = 215/379 (56.73%), Postives = 246/379 (64.91%), Query Frame = 1
Query:    1 LSLQEALTMQLDEMELLETAYPEVSFDTPDARPPLRAVLDQCLERQADLPXXXXXXXXXXRGAADEPWLQSALAGAPLISFRCPLPPLGFEAQLRVRLPRRYPEAPLVATLEGAPPRLTASAREAI--LAGSAAAKLSGELGGEPQCLQVLGEAVRAATDICADSNSRDGGDQQSGG---VGGVGGVXVXXXXXXSESPCGSH-----------AHAAGRGGSXXXXXTRSSSGERVGRXXXXXXXXXAVFLGRRLIYSHHIIATQKRTGIVKAARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAVRGEEKSPLPGGRTLDQERLLPLPLEELGEKEGGVSALAKRCKEAGLGELFSTLLR 1089
            +SL EALTMQLDEMELLETAYPE++FDTPDARP LRA LD   ERQ                 A+E  LQ ALA  PL+SFRC LP    EAQLRVRLP  YP+APL+  +EG P +LT SAR+AI       A +LS +   EPQCL+VLG A++ + D+ AD  S  G   Q+GG   + G GG  +      S +PC  H           +H +   G+       S+SGE  G           VFLGRRLIYSHHIIATQKRTGI+KAAR+L LGGFSK      VGWPGVIV+EGEE +CEDFVSTLRGWRWKHL VRGEEK  +P GRTLDQER LP  L ELGEKEG VS LAK C+EAGLGELFSTLLR
Sbjct:    8 MSLHEALTMQLDEMELLETAYPELTFDTPDARPLLRAALDGSFERQ-----------HTSDQKAEEIRLQEALADTPLLSFRCTLPLK--EAQLRVRLPHEYPDAPLLVKVEGTP-QLTVSARKAISDAVTDEATRLSRDNRREPQCLEVLGAAMQTSVDL-ADRESTGGQASQAGGCHEISGCGGGGMTT----SAAPCLPHTCSSEGEERGISHHSNNVGATKRVV--SNSGEPDGEP---------VFLGRRLIYSHHIIATQKRTGIMKAARDLRLGGFSK------VGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLTVRGEEKVRVPNGRTLDQERRLPALLIELGEKEG-VSVLAKHCREAGLGELFSTLLR 349          
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Match: A0A6H5KV49_9PHAE (DUF1115 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV49_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 8.600e-93
Identity = 185/352 (52.56%), Postives = 216/352 (61.36%), Query Frame = 1
Query:   40 MELLETAYPEVSFDTPDARPPLRAVLDQCLERQADLPXXXXXXXXXXRGAADEPWLQSALAGAPLISFRCPLPPLGFEAQLRVRLPRRYPEAPLVATLEGAPPRLTASAREAILAG--SAAAKLSGELGGEPQCLQVLGEAVRAATDICADSNSRDGGDQQSGGVGGVGGVXVXXXXXXSESPCGSHAHAAGRGGSXXXXXTRSSSGERVGRXXXXXXXXXAVFLGRRLIYSHHIIATQKRTGIVKAARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAVRGEEKSPLPGGRTLDQERLLPLPLEELGEKEGGVSALAKRCKEAGLGELFSTLLR 1089
            MELLETAYPE++FDTPDARP LRA LD   ERQ                 A+E  L+ ALA  PL+SFRC LP    EAQLRVRLP  YP+  L+ T+EG P +LT SAR+AI       A +LS +   EPQCL+VLG A++ + D+    ++   G                     S +PC  +  ++          T S    +             VFLGRRLIYSHHIIATQKR GI+KAAR+L LGGFSK      VGWPGVIV+EGEE +CE+FVSTLRGWRWKHLAVRGEEK  +P GR LDQERLLP  L ELGEKE  VS LAK C+EAGLGELFSTLLR
Sbjct:    1 MELLETAYPELTFDTPDARPLLRAALDGSFERQ-----------HTSDQKAEETRLKEALADTPLLSFRCTLPLK--EAQLRVRLPHDYPDTLLLVTIEGTP-QLTVSARKAITDAVTDKATRLSRDRRREPQCLEVLGAAMQTSADLAGRESTA--GXXXXXXXXXXXXXCGGGGMTSSTAPCLPYTCSSEGEERDVSHLTNSVGATKSVISKSAQPEGEPVFLGRRLIYSHHIIATQKRAGIIKAARDLRLGGFSK------VGWPGVIVVEGEEGSCEEFVSTLRGWRWKHLAVRGEEKVRVPNGRALDQERLLPALLIELGEKER-VSVLAKHCREAGLGELFSTLLR 329          
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Match: K0RAK9_THAOC (DUF1115 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAK9_THAOC)

HSP 1 Score: 132 bits (332), Expect = 1.050e-30
Identity = 65/128 (50.78%), Postives = 87/128 (67.97%), Query Frame = 1
Query:  706 LGRRLIYSHHIIATQKRTGIVKAARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAVRGEEKSPLPGGRTLDQERLLPLPLEELGEKEGGVSALAKRCKEAGLGELFSTLLR 1089
            LGRR+IYSHHIIA  KR G+   A +  LGG++K      +GWPGV+++EGEE++C+ FV  ++ WRW+ L VRGEE+  +P G +LD  R L    EELGE E  +SALA+ C+ AGL  LF T L+
Sbjct:  182 LGRRIIYSHHIIANSKRRGLHDLASQYNLGGYAK------IGWPGVVLVEGEESSCQSFVDEIKRWRWQQLQVRGEEQIRIPRGDSLDDHRKLSPDFEELGEDE--MSALAQNCRVAGLEGLFLTCLK 301          
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Match: A0A7S4DWA7_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DWA7_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 3.820e-28
Identity = 67/130 (51.54%), Postives = 83/130 (63.85%), Query Frame = 1
Query:  700 VFLGRRLIYSHHIIATQKRTGIVKAARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAVRGEEKSPLPGGRTLDQERLLPLPLEELGEKEGGVSALAKRCKEAGLGELFSTLLR 1089
            + LGRRLIYSHHIIAT KR  + + A E GLG  +K      +GWPG IV+EG E++ +D+V  L+  RWKHLAVRGEE      G+TLD  R LP    ELGE +  +S  A  CK  GL ELF TL++
Sbjct:  285 IVLGRRLIYSHHIIATSKREAVKQYAVERGLGCIAK------IGWPGAIVVEGRESDVQDYVDALKKLRWKHLAVRGEEILVAKEGQTLDDLRALPSTFTELGENQ--MSDFAAMCKAVGLDELFMTLMK 406          
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Match: A0A7J6N1L3_PERCH (RWD domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6N1L3_PERCH)

HSP 1 Score: 122 bits (306), Expect = 4.220e-28
Identity = 64/128 (50.00%), Postives = 87/128 (67.97%), Query Frame = 1
Query:  706 LGRRLIYSHHIIATQKRTGIVKAARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAVRGEEKSPLPGGRTLDQERLLPLPLEELGEKEGGVSALAKRCKEAGLGELFSTLLR 1089
            LGRR+IYSHHI +  KR  I++ AR L LGG SK      +G+PG I++EG+E +C +FV+ +   RWK++AVRGEE+ P+P GRTLD  R LPL   E G  +  +  +A RC+EAGL ELF T ++
Sbjct:  168 LGRRMIYSHHIWSPVKRKYILEWARALRLGGMSK------LGYPGCILVEGDERDCAEFVNLVTRLRWKYIAVRGEEQVPVPPGRTLDDMRALPLSFIEYGWDD--MDKVAARCREAGLEELFLTCMK 287          
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Match: A0A7S3Y146_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y146_HETAK)

HSP 1 Score: 118 bits (296), Expect = 4.290e-27
Identity = 68/141 (48.23%), Postives = 85/141 (60.28%), Query Frame = 1
Query:  706 LGRRLIYSHHIIATQKRTGIVKAARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAVRGEEKSPLP-----------GGRT-LDQERLLPLP-LEELGEKEGGVSALAKRCKEAGLGELFSTLLR 1089
            LGRRLI+SHHII  +KR  +   A+EL LGG+ K      +GWPG+I++EGEE  CE+F+  +R W+W+HL VRGEE   LP           GG   LD  R LP     EL E E  VS LA  C++AGL ELF T L+
Sbjct:  136 LGRRLIWSHHIIGKEKRRDMKAIAKELELGGYCK------IGWPGIIILEGEEEGCEEFIRQIRRWQWQHLVVRGEETVDLPFTVPSQPELAEGGPVGLDSFRALPTKEFVELPETE--VSTLATICRDAGLEELFRTALK 268          
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Match: A0A0G4GTF1_VITBC (RWD domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GTF1_VITBC)

HSP 1 Score: 120 bits (301), Expect = 4.790e-27
Identity = 61/128 (47.66%), Postives = 82/128 (64.06%), Query Frame = 1
Query:  706 LGRRLIYSHHIIATQKRTGIVKAARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAVRGEEKSPLPGGRTLDQERLLPLPLEELGEKEGGVSALAKRCKEAGLGELFSTLLR 1089
            LGRR+ YSHHI A  KR  I++ A EL LGGFSK      +G+PGV+++EG E  C ++++ L+  RWKH  VRGEE   +P  + LD  R LP   EELG K  G+  +A  C++AGLG LF T ++
Sbjct:  208 LGRRVCYSHHIRAETKRRYIIQWALELRLGGFSK------IGYPGVVIVEGPEEGCMEYITRLQRLRWKHFVVRGEEIIDVPASKCLDDMRRLPRGFEELGPK--GMGRMADECRKAGLGALFLTCMK 327          
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Match: A0A7J6NZL4_PEROL (DUF1115 domain-containing protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NZL4_PEROL)

HSP 1 Score: 119 bits (297), Expect = 8.170e-27
Identity = 61/128 (47.66%), Postives = 87/128 (67.97%), Query Frame = 1
Query:  706 LGRRLIYSHHIIATQKRTGIVKAARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAVRGEEKSPLPGGRTLDQERLLPLPLEELGEKEGGVSALAKRCKEAGLGELFSTLLR 1089
            LGRR+IYSHHI +  KR  I++ AR L LGG SK      +G+PG I++EG+E +C +FV+ +   RWK++AVRGEE+ P+P G++L+  R LPL   E G  +  +  +A RC+EAGL ELF T ++
Sbjct:  169 LGRRMIYSHHIWSPVKRKYILEWARALRLGGMSK------LGYPGCILVEGDERDCAEFVNLVTRLRWKYIAVRGEEQIPVPPGKSLEDMRALPLSFTEYGWDD--MDKVAARCREAGLEELFLTCMK 288          
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Match: K3WQG3_GLOUD (RWD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQG3_GLOUD)

HSP 1 Score: 115 bits (289), Expect = 5.570e-26
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  706 LGRRLIYSHHIIATQKRTGIVKAARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAVRGEEKSPLPGGRTLDQERLLPLPLEELGEKEGGVSALAKRCKEAGLGELFSTLLR 1089
            LGRR IY HHII   KR  +++ A EL LGGFSK      +GWPGV+++EG EAN +++V  L+  RWK + VRGE+      G T+D  R LP   +E  E   G+SALA  C++AG+ ELF T ++
Sbjct:  156 LGRRAIYFHHIINPNKRRVVMEWALELQLGGFSK------IGWPGVVIVEGLEANAQEYVRRLQHLRWKQIVVRGEQTETCAQGETIDVMRRLPRGFQEFPET--GMSALAAACRDAGVEELFLTTMK 275          
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Match: A0A7J6NRX1_PEROL (DUF1115 domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NRX1_PEROL)

HSP 1 Score: 112 bits (281), Expect = 6.460e-26
Identity = 56/128 (43.75%), Postives = 87/128 (67.97%), Query Frame = 1
Query:  706 LGRRLIYSHHIIATQKRTGIVKAARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAVRGEEKSPLPGGRTLDQERLLPLPLEELGEKEGGVSALAKRCKEAGLGELFSTLLR 1089
            LGRR+I++HHI +  KR  I + A++L LGG SK      +G+PG IV+EG+E +  D+V+ +    W+++AVRG+E+ P+P G+ LD  R LP+   E G+ E   +A+A+RC+EAGL +LF T ++
Sbjct:   40 LGRRMIFNHHIRSPYKRKCIQQWAKDLRLGGMSK------IGFPGCIVVEGDERDVTDYVNMVSKLNWRYMAVRGDEQIPIPPGKELDDLRKLPIEFHEYGKDE--FNAVAERCREAGLEDLFLTCMQ 159          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7826.16781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQP9_ECTSI1.690e-10856.73DUF1115 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KV49_9PHAE8.600e-9352.56DUF1115 domain-containing protein n=1 Tax=Ectocarp... [more]
K0RAK9_THAOC1.050e-3050.78DUF1115 domain-containing protein n=1 Tax=Thalassi... [more]
A0A7S4DWA7_9EUKA3.820e-2851.54Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7J6N1L3_PERCH4.220e-2850.00RWD domain-containing protein n=1 Tax=Perkinsus ch... [more]
A0A7S3Y146_HETAK4.290e-2748.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4GTF1_VITBC4.790e-2747.66RWD domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A7J6NZL4_PEROL8.170e-2747.66DUF1115 domain-containing protein n=3 Tax=Perkinsu... [more]
K3WQG3_GLOUD5.570e-2646.88RWD domain-containing protein n=1 Tax=Globisporang... [more]
A0A7J6NRX1_PEROL6.460e-2643.75DUF1115 domain-containing protein n=1 Tax=Perkinsu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7826contigL-elsbetiae_contig7826:1883..4594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.8
Seed ortholog evalue6.3e-87
Seed eggNOG ortholog2880.D8LQP9
Preferred nameRWDD2B
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1115)
EggNOG OGs28IR6@1,2QR2G@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionUncharacterised conserved protein UCP038021, RWD
Ec32 orthologEc-24_001830.1
Exons4
Model size1233
Cds size1068
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7826.16781.1prot_L-elsbetiae_contig7826.16781.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7826 2024..4570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.1354146-UTR-L-elsbetiae_contig7826:1882..20231622816867.1354146-UTR-L-elsbetiae_contig7826:1882..2023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7826 1883..2023 -
1691683872.9822366-UTR-L-elsbetiae_contig7826:1882..20231691683872.9822366-UTR-L-elsbetiae_contig7826:1882..2023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7826 1883..2023 -
1622816867.190447-UTR-L-elsbetiae_contig7826:4570..45941622816867.190447-UTR-L-elsbetiae_contig7826:4570..4594Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7826 4571..4594 -
1691683873.0367904-UTR-L-elsbetiae_contig7826:4570..45941691683873.0367904-UTR-L-elsbetiae_contig7826:4570..4594Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7826 4571..4594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.1463585-CDS-L-elsbetiae_contig7826:2023..22901622816867.1463585-CDS-L-elsbetiae_contig7826:2023..2290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7826 2024..2290 -
1691683872.9941745-CDS-L-elsbetiae_contig7826:2023..22901691683872.9941745-CDS-L-elsbetiae_contig7826:2023..2290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7826 2024..2290 -
1622816867.156656-CDS-L-elsbetiae_contig7826:3014..33391622816867.156656-CDS-L-elsbetiae_contig7826:3014..3339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7826 3015..3339 -
1691683873.0049021-CDS-L-elsbetiae_contig7826:3014..33391691683873.0049021-CDS-L-elsbetiae_contig7826:3014..3339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7826 3015..3339 -
1622816867.1670108-CDS-L-elsbetiae_contig7826:3384..38451622816867.1670108-CDS-L-elsbetiae_contig7826:3384..3845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7826 3385..3845 -
1691683873.015779-CDS-L-elsbetiae_contig7826:3384..38451691683873.015779-CDS-L-elsbetiae_contig7826:3384..3845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7826 3385..3845 -
1622816867.180801-CDS-L-elsbetiae_contig7826:4555..45701622816867.180801-CDS-L-elsbetiae_contig7826:4555..4570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7826 4556..4570 -
1691683873.0268207-CDS-L-elsbetiae_contig7826:4555..45701691683873.0268207-CDS-L-elsbetiae_contig7826:4555..4570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7826 4556..4570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7826.16781.1

>prot_L-elsbetiae_contig7826.16781.1 ID=prot_L-elsbetiae_contig7826.16781.1|Name=mRNA_L-elsbetiae_contig7826.16781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=356bp
MQLDEMELLETAYPEVSFDTPDARPPLRAVLDQCLERQADLPPPPPPPPD
DERGAADEPWLQSALAGAPLISFRCPLPPLGFEAQLRVRLPRRYPEAPLV
ATLEGAPPRLTASAREAILAGSAAAKLSGELGGEPQCLQVLGEAVRAATD
ICADSNSRDGGDQQSGGVGGVGGVGVGGGGGSSESPCGSHAHAAGRGGSA
AGSATRSSSGERVGRGGGGGGGGGAVFLGRRLIYSHHIIATQKRTGIVKA
ARELGLGGFSKASSRRRVGWPGVIVIEGEEANCEDFVSTLRGWRWKHLAV
RGEEKSPLPGGRTLDQERLLPLPLEELGEKEGGVSALAKRCKEAGLGELF
STLLR*
back to top

mRNA from alignment at L-elsbetiae_contig7826:1883..4594-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7826.16781.1 ID=mRNA_L-elsbetiae_contig7826.16781.1|Name=mRNA_L-elsbetiae_contig7826.16781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2712bp|location=Sequence derived from alignment at L-elsbetiae_contig7826:1883..4594- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCCCTGCAAGAGGCGTTAACGATGCAATTGGACGAGGTATTGTGAGA TATGGGTGCTGATGGTCAAACTCCTATGTATGAATCTAGTTGTTGGTAGA CACGTAGTACGAATGAGGCGGAGTTCTGTCCCTGCTGGGTCACACCGCAT ACATATATGTGTACCTACGTAAACAGCTTTCTCACAAGCACGCTTAGAGG TTCGATGCACCATCGGAGGTGTCATGAAGCCCAAGGGGAAGATATCCCGC CATCCGTCTAGCTTTCCAAGCTCTTCCTGCTTGTTAACCCCCTGACGACC CCAAAAACTTCTAGTTCCAGAGCTGTGATTGGATCTACTCACAGTCCCCT GTGACCGATCCCAACTCTAAAATCCCAATGGCCCCAAAACCATCCCCGTG GCCTTGTTGTAGGTTCCTTGGTACATTTACAATTGTACATTTACTACATG TGTGAAGGTATGTAGACGAGTACTGTGGTACATGATACTAAATGGGTGAA GGCATGTAGACGAGTGCTGCTGTATGTACACGTGACATACAGCAGCAGCA GTCAATGTATCATCTCCGTACAAAAAGCTTCCCAACATTATTATCGATCT AGAGTCCCCGCCCTCGTTACCCAAAGATTTTCTGTGTCGCCAAAACTGAA AGTTTAGCTAACCACTACTACATACATACTGCTGCATCTAGATACATGTA CCGCGTTTGCTTCTCCGCGCTTGCTTCTTTCTTCTTTTCGGCCATACAGA TGGAACTGCTCGAGACGGCATACCCCGAGGTCAGCTTCGACACCCCGGAC GCCCGCCCGCCTCTCCGGGCGGTGCTCGACCAATGCCTCGAGAGGCAAGC AGACCTGCCGCCGCCGCCGCCGCCGCCGCCTGACGACGAACGAGGCGCCG CCGACGAACCTTGGCTGCAAAGCGCCCTCGCCGGGGCCCCCCTGATATCC TTCCGCTGCCCCCTCCCCCCGCTCGGATTCGAAGCCCAGCTGCGGGTCCG CCTCCCGAGGCGCTACCCCGAGGCCCCCCTCGTCGCCACCCTGGAAGGAG CGCCGCCGCGGCTGACGGCGTCGGCGAGAGAGGCGATTTTGGCGGGCTCC GCGGCGGCGAAGCTGTCCGGAGAGCTCGGAGGCGAGCCGCAGTGCCTCCA GGTGCTGGGGGAGGCTGTACGGGCGGCGACCGATATTTGTGCGGACAGCA ACAGTAGAGAGTTGGCCGGGGAGAAGGGCAACGCGCCGGCGGAAGCCGGG GCAAGCGGCGGCGATCAACAGTCGGGTGGCGTTGGCGGCGTTGGGGGCGT TGGCGTTGGCGGCGGCGGTGGTAGTAGCGAGAGCCCGTGCGGGTCGCATG CACATGCAGCGGGCAGAGGAGGCAGCGCGGCGGGAAGCGCGACCAGATCG AGCTCCGGTGAGCGTGTGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGCGGTTTTCCTTGGAAGGCGTTTGATTTACTCGCACCACATCATTGCCA CGCAGAAGAGGACGGGGATCGTGAAGGCGGCGAGGGAGCTGGGGCTGGGG GGCTTCAGCAAGGCAAGTTCTCGTCGCCGTGTTTGGTCTTGCGAGCGGCC TCTAATTAACGCTGGCGACGCTGGCAGTGGCAGAGGCCGTGTTGGTTGTG TGGTGTCAAGTTACGTTCTGCGATGCTCTCGCAAGCATCCCATGCAGGCT AGGCTGCCGGCACATAACTCGCGTCTACAATAATGGTTGCAAGCAAGCTA GGTAGGTAGGCTGCTGGCACATATCTCGTGTCTACAATATTGGTTGCAGG AGTCAAGAAGTTACACCGCACTTGCTCGCAAGCAAGCTAGGTACATAGAT AGGCTGCCGGTACATAACCAGCGATTTGCCCTGCCCGCGGCCGCGAAGGC CCGCGTTGAGCGTCACGTGTACATGTACACACGTACGCCCATGTCGCTTG CGGTGGCAGCCCATGTCGCTTGCGGTGGCAGCAGCGCCCTCTGCCGCCAA GTGTATTTATCAGCAAGCTCTTAAAAAAACACAGAGGCGTGCTGCATGCA TGCTTCTGTGTATATGCAGTGCACACACAAAGGCCGTACACTTACTTCCC TCCATCCGCCGCCGCCGCCGATCTGATTGATCACGTCGCCGTAGAATAAA ACCGACACCGGGGCGGACAACGGACCGATACAATAATAATAATAAAAAAC ATGAAAAAAAAAATGCAACAAATAAAATATTAAATATACAGGCAGGCCAT TAAAAAAAAAAAACATGAAAAAACATGCAACAAACAAAATAAAATAAACA ACAGGTGGGCTGGCCTGGCGTAATCGTGATCGAGGGCGAAGAGGCCAACT GCGAAGACTTCGTCAGCACGCTTCGAGGGTGGCGATGGAAGCACCTCGCG GTGCGAGGCGAGGAGAAGAGTCCACTGCCCGGCGGGAGGACGCTGGACCA GGAACGCCTCCTTCCCTTGCCCCTGGAAGAGCTGGGAGAGAAGGAAGGAG GCGTTTCCGCGCTCGCGAAGCGGTGCAAGGAGGCGGGCCTCGGCGAGCTT TTCTCCACGCTGCTTCGATAGCATCACATTTTTTTTTATTTTTCTGTTTC TTCTCGTGACTGGACTAGATGTATGTACGACTGCATACTCGATGGGTGGG CGCCCCCTTGCCGATGGCGACACCTGGCTACATATCATATGTTTTGTTTT TTTTTTCCCTCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7826:1883..4594-

>mRNA_L-elsbetiae_contig7826.16781.1 ID=mRNA_L-elsbetiae_contig7826.16781.1|Name=mRNA_L-elsbetiae_contig7826.16781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2136bp|location=Sequence derived from alignment at L-elsbetiae_contig7826:1883..4594- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAATTGGACGAGATGCAATTGGACGAGATGGAACTGCTCGAGACGGC
ATACCCCGAGGTCAGCTTCGACACCCCGGACGCCCGCCCGCCTCTCCGGG
CGGTGCTCGACCAATGCCTCGAGAGGCAAGCAGACCTGCCGCCGCCGCCG
CCGCCGCCGCCTGACGACGAACGAGGCGCCGCCGACGAACCTTGGCTGCA
AAGCGCCCTCGCCGGGGCCCCCCTGATATCCTTCCGCTGCCCCCTCCCCC
CGCTCGGATTCGAAGCCCAGCTGCGGGTCCGCCTCCCGAGGCGCTACCCC
GAGGCCCCCCTCGTCGCCACCCTGGAAGGAGCGCCGCCGCGGCTGACGGC
GTCGGCGAGAGAGGCGATTTTGGCGGGCTCCGCGGCGGCGAAGCTGTCCG
GAGAGCTCGGAGGCGAGCCGCAGTGCCTCCAGGTGCTGGGGGAGGCTGTA
CGGGCGGCGACCGATATTTGTGCGGACAGCAACAGTAGAGAATGGAACTG
CTCGAGACGGCATACCCCGAGGTCAGCTTCGACACCCCGGACGCCCGCCC
GCCTCTCCGGGCGGTGCTCGACCAATGCCTCGAGAGGCAAGCAGACCTGC
CGCCGCCGCCGCCGCCGCCGCCTGACGACGAACGAGGCGCCGCCGACGAA
CCTTGGCTGCAAAGCGCCCTCGCCGGGGCCCCCCTGATATCCTTCCGCTG
CCCCCTCCCCCCGCTCGGATTCGAAGCCCAGCTGCGGGTCCGCCTCCCGA
GGCGCTACCCCGAGGCCCCCCTCGTCGCCACCCTGGAAGGAGCGCCGCCG
CGGCTGACGGCGTCGGCGAGAGAGGCGATTTTGGCGGGCTCCGCGGCGGC
GAAGCTGTCCGGAGAGCTCGGAGGCGAGCCGCAGTGCCTCCAGGTGCTGG
GGGAGGCTGTACGGGCGGCGACCGATATTTGTGCGGACAGCAACAGTAGA
GACGGCGGCGATCAACAGTCGGGTGGCGTTGGCGGCGTTGGGGGCGTTGG
CGTTGGCGGCGGCGGTGGTAGTAGCGAGAGCCCGTGCGGGTCGCATGCAC
ATGCAGCGGGCAGAGGAGGCAGCGCGGCGGGAAGCGCGACCAGATCGAGC
TCCGGTGAGCGTGTGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGC
GGTTTTCCTTGGAAGGCGTTTGATTTACTCGCACCACATCATTGCCACGC
AGAAGAGGACGGGGATCGTGAAGGCGGCGAGGGAGCTGGGGCTGGGGGGC
TTCAGCAAGGCAAGTTCTCGTCGCCGTCGGCGGCGATCAACAGTCGGGTG
GCGTTGGCGGCGTTGGGGGCGTTGGCGTTGGCGGCGGCGGTGGTAGTAGC
GAGAGCCCGTGCGGGTCGCATGCACATGCAGCGGGCAGAGGAGGCAGCGC
GGCGGGAAGCGCGACCAGATCGAGCTCCGGTGAGCGTGTGGGAAGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGCGGTTTTCCTTGGAAGGCGTTTGATT
TACTCGCACCACATCATTGCCACGCAGAAGAGGACGGGGATCGTGAAGGC
GGCGAGGGAGCTGGGGCTGGGGGGCTTCAGCAAGGCAAGTTCTCGTCGCC
GTGTGGGCTGGCCTGGCGTAATCGTGATCGAGGGCGAAGAGGCCAACTGC
GAAGACTTCGTCAGCACGCTTCGAGGGTGGCGATGGAAGCACCTCGCGGT
GCGAGGCGAGGAGAAGAGTCCACTGCCCGGCGGGAGGACGCTGGACCAGG
AACGCCTCCTTCCCTTGCCCCTGGAAGAGCTGGGAGAGAAGGAAGGAGGC
GTTTCCGCGCTCGCGAAGCGGTGCAAGGAGGCGGGCCTCGGCGAGCTTTT
CTCCACGCTGCTTCGATAGGTGGGCTGGCCTGGCGTAATCGTGATCGAGG
GCGAAGAGGCCAACTGCGAAGACTTCGTCAGCACGCTTCGAGGGTGGCGA
TGGAAGCACCTCGCGGTGCGAGGCGAGGAGAAGAGTCCACTGCCCGGCGG
GAGGACGCTGGACCAGGAACGCCTCCTTCCCTTGCCCCTGGAAGAGCTGG
GAGAGAAGGAAGGAGGCGTTTCCGCGCTCGCGAAGCGGTGCAAGGAGGCG
GGCCTCGGCGAGCTTTTCTCCACGCTGCTTCGATAG
back to top