mRNA_L-elsbetiae_contig7819.16769.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7819.16769.1
Unique NamemRNA_L-elsbetiae_contig7819.16769.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 1.470e-84
Identity = 177/308 (57.47%), Postives = 209/308 (67.86%), Query Frame = 1
Query:    1 QVIFHMTSTLLQFGAVMLVVMIGFTMALHVLFRDLEDFSETLLKLFEAMLGGTEIFGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGTFKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLY-FFPKAKKEHP-------DVYGRAFWRKVCEAARERGKRAKRAFGVVMFWFVLGLVAVTGEAILWGLSGFSYAQYVLYVEVRSV----LYLGFNSRADFTRGSS-----------------RMLQGVLIALACSYDWGLTSLAWFLILLWCILVAPLWLF 837
            QVIF MT+TLLQFGAVMLVVMIGFTMALHV+FRD+EDF +TLL LF+AMLG T  F +FSGGRYD VATILVVVYLFIVT+MLLNLLIAILST HA+VQE+ GG FKVSKARII HY TVVD D+LP PFNL+QL++S+ V  +TF Y F  +AK+E         D +GR FW  V E AR+R + A+RAFG +++W VLG VAV G AILWGLSGF YAQY  +  + +      + GF   +D    +                  RMLQG+ I      +W    LAWFL  L CIL AP  LF
Sbjct:  866 QVIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDFGDTLLGLFKAMLGETGFFDEFSGGRYDPVATILVVVYLFIVTVMLLNLLIAILSTEHAQVQENTGGAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLLLSLGVIAMTFPYCFLLEAKREQSETERPAIDEHGRLFWGNVWEGARQRHRGARRAFGQLVWWLVLGPVAVAGGAILWGLSGFFYAQYAWHSWLSTTDEQDCFFGFLLESDEEPDAEDMSKEVVMFGSCGSPLWRMLQGLGIVFRFLLEWIGVVLAWFLTFLLCILGAPCCLF 1173          
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 3.710e-79
Identity = 172/304 (56.58%), Postives = 198/304 (65.13%), Query Frame = 1
Query:    1 QVIFHMTSTLLQFGAVMLVVMIGFTMALHVLFRDLEDFSETLLKLFEAMLGGTEIFGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGTFKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLYFFP-KAKKEHP-------DVYGRAFWRKVCEAARERGKRAKRAFGVVMFWFVLGLVAVTGEAILWGLSGFSYAQYVLYVEVRSV----LYLGFNSRAD------------FTRGSS-----RMLQGVLIALACSYDWGLTSLAWFLILLWCILVAP 825
            QVIF MT+TLLQFGAVMLVVMIGFTMALHV FRD+ DF +TLL LF+AMLG T IF +FSGGRYD VATILVVVYL IVT+MLLNLLIAILST HA+V E+    FKVSKARII HY TVVD D+LP PFNL+QL++S+ V  +T  Y+F  +AK+EH        D  GR FW  V E AR R + A+RAFG  ++W VLG VAV G A+LW LSG  YAQY  +  + +      + GF    D               GS      RMLQGV I       W    LAWFLI L CIL AP
Sbjct:  883 QVIFRMTATLLQFGAVMLVVMIGFTMALHVFFRDVADFGDTLLGLFKAMLGETGIFDEFSGGRYDPVATILVVVYLCIVTVMLLNLLIAILSTEHAQVMENTAEAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLILSLGVIVLTLPYYFLLEAKREHSETERPATDEDGRLFWGNVWEGARHRHRSARRAFGQFVWWLVLGSVAVAGGAMLWSLSGLFYAQYACHSWLSTTDEQNSFFGFLQEGDEEPDEEDTAKDVVVFGSCGSPLWRMLQGVRIVFRSVLQWIGVVLAWFLIFLLCILGAP 1186          
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 7.770e-50
Identity = 129/278 (46.40%), Postives = 161/278 (57.91%), Query Frame = 1
Query:    4 VIFHMTSTLLQFGAVMLVVMIGFTMALHVLFRDLEDFSETLLKLFEAMLGGTEIFGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGTFKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLYFFPKAKKEHPDVYGRAFWRKVCEAARERGKRAKRAFGVVMFWFVLGLVAVTGEAILWGLSGFSYAQYVLYVEVRSVLYLGFNSRADFTRGSSRMLQGVLIALACSYDWGLTSLAWFLILLWCILVAPLWLF 837
            VIF MT+ LL+FG VM VVMIGFTMA HVLFRD + F E+ L+LF+AM G T  F  FSG  YD VAT+L+VVYL IVT++LLNLL+AILSTSH++VQ++    FK S AR++DHY  VV  D+LP PFNL+QLVV    + V                 G    R+     RE  +R  +A G V+FW VLG VAV G  +LW             V     +YL    R     G  + L   LI+L C Y        +F+I LWCIL AP++LF
Sbjct:  688 VIFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRDFDSFGESFLELFKAMFGETTFFNAFSGDTYDAVATMLLVVYLSIVTILLLNLLVAILSTSHSKVQKNIDREFKASIARMMDHYQLVVTNDILPAPFNLLQLVVWPIAWCV--------GGCCGRSTSGSQSTRQELNRGREAYERGNKAIGPVVFWVVLGPVAVVGGTLLW------------IVSTPLSVYLW---RKHHREGDRKRLS--LISLGCRY--------FFIIPLWCILGAPVYLF 932          
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 4.690e-46
Identity = 109/209 (52.15%), Postives = 136/209 (65.07%), Query Frame = 1
Query:    1 QVIFHMTSTLLQFGAVMLVVMIGFTMALHVLFRDLEDFSETLLKLFEAMLGGTEIFGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGTFKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLYFFPKAKKEHPDVYGRAFWRKVCEAARERGKRA----KRAFGVVMFWFVLGLVAVTGEAILW 615
            +V+F MT  LL+FG VM V+++GFTMA HVLFRD + F E+ L LF+AMLG T+ F  FSG  YD VAT L+VVYLFIVT+MLLNLL+AILSTSHA+V E+    FKVS AR++DHY  VV  D+LPTPFNL+QL+V            +P A   H      +      +  R R K A     +A G V+FW VLG VAV G ++LW
Sbjct:  879 RVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSFGESFLDLFKAMLGDTDFFKVFSGDTYDVVATFLLVVYLFIVTVMLLNLLVAILSTSHAQVAENIEREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLIV------------WPIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIGPVVFWVVLGPVAVIGGSLLW 1075          
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 6.110e-43
Identity = 105/208 (50.48%), Postives = 130/208 (62.50%), Query Frame = 1
Query:    4 VIFHMTSTLLQFGAVMLVVMIGFTMALHVLFRDLEDFSETLLKLFEAMLGGTEIFGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGTFKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLYFFPKAKKEHPDVYGRAFWRKVCEAARERGKRA----KRAFGVVMFWFVLGLVAVTGEAILW 615
            V+F MT  LL+FG VM V+++GF MA HV FRD + F E+ L LF+AMLG  + F  FSG  YD VAT L+VV LFIVT+MLLNLL+AILSTSHA+V E+    FKVS AR++DHY  VV  D+LPTPFNL+QLVV            +P A   H      +      +  R R K A     +A   V+FW VLG VAV G ++LW
Sbjct:  154 VVFRMTRILLKFGFVMAVILLGFIMAFHVQFRDFDSFGESFLDLFKAMLGDNDFFKVFSGDTYDFVATFLLVVGLFIVTVMLLNLLVAILSTSHAQVAENIDREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLVV------------WPIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIEPVVFWVVLGPVAVNGGSLLW 349          
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.740e-42
Identity = 112/278 (40.29%), Postives = 155/278 (55.76%), Query Frame = 1
Query:    1 QVIFHMTSTLLQFGAVMLVVMIGFTMALHVLFRDLEDFSETLLKLFEAMLGGTEIFGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGTFKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLYFFPKAKKEHPDVYGRAFWRKVCEAARERGKRAKRAFGVVMFWFVLGLVAVTGEAILWGLSGFSYAQYVLYVEVRSVLYLGFNSRADFTRGSSRMLQGVLIALACSYDWGLTSLAWFLILLWCILVAPLWL 834
            QV+F MT+ L++FG V++VVM+GF M+ H LF D++ F  T L LF+AMLG  + FG F G +YD+VAT L V+YL ++ +MLLNLLIA+LSTSH++V+  A   FKVSKARII+HY  VVD  LLP PFNL+QL++S+ V                 D  G+               RA+ A G + FW  LG VA     +LW LS   +A +V +          F S+A   RG+  +              G   + + ++  WC+L APL+L
Sbjct:  928 QVVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGGTCLTLFKAMLGEVDFFGSFPGNQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMV--------------RDRSGQG----------TASTRAQEAVGRMAFWLALGPVAAACGTVLWVLSSL-FAPFVWHTH--------FYSKAQARRGALSV--------------GSLLVRYLIVFFWCVLGAPLYL 1158          
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.920e-30
Identity = 85/223 (38.12%), Postives = 127/223 (56.95%), Query Frame = 1
Query:    1 QVIFHMTSTLLQFGAVMLVVMIGFTMALHVLFRDLEDFSETLLKLFEAMLGGTEIFGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGTFKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLYFFPKAKKEHPDVYGRAFWRKVC-------------EAARERG--KRAKRAFGVVMFWFVLGLVAVTGEAILWGLS 624
            QV+F MT  L +FG +ML+VM+GF  + + L+++   + E    +F A LG T+   DFSG  +D VAT+L+VVYL ++T+M+LNLL+A+LST+HA+V  +AG  +KV++AR+I HY  VV+ D LP PFNL Q + ++  F V  L F    +                             +  R+R   K A+  FG + FW +LG +AV    +LW +S
Sbjct: 1246 QVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTAYGEVWKAIFRATLGETDYLDDFSGTTFDGVATVLLVVYLVLLTIMMLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWIFALP-FMVLDLCFRTSRRPSTASTNSAXXXXXXXXXXXXXXSINGNEKTKRDRSYFKVARGFFGRLAFWAMLGPIAVLAGWVLWMIS 1467          
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 4.140e-28
Identity = 86/210 (40.95%), Postives = 118/210 (56.19%), Query Frame = 1
Query:    1 QVIFHMTSTLLQFGAVMLVVMIGFTMALHVLFRDL--EDFSETLLKLFEAMLGGTEIFGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGTFKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLYFFPKAKKEHPDVYGRAFWRKVCEAARERGKRAKRAFGVVMFWFVLGLVAVTGEAILWGLS 624
            QV++ M S L QF  VM VV++GF M+   LFRD+  E     LL  F+AMLG   +F DF G ++D  AT+L+V YL ++T+MLLNLLIA+LST+H +V+E+     +VS+AR+  HY  VV  D LP PFNL QLVV +    V  L+        +P                     A+R  G ++FW VLG  A+ G   +W +S
Sbjct:  780 QVLYSMASELGQFFVVMGVVILGFAMSFFALFRDVKGETLRGALLDAFQAMLGEVGLFDDFVGEKHDLAATVLLVSYLLVMTIMLLNLLIAVLSTAHGKVEEAV--LIRVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCQMVDLLF----KSNTYPI--------------------ARRGVGRIVFWLVLGPGAILGGIFVWLVS 963          
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.240e-27
Identity = 85/210 (40.48%), Postives = 118/210 (56.19%), Query Frame = 1
Query:    1 QVIFHMTSTLLQFGAVMLVVMIGFTMALHVLFRDL--EDFSETLLKLFEAMLGGTEIFGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGTFKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLYFFPKAKKEHPDVYGRAFWRKVCEAARERGKRAKRAFGVVMFWFVLGLVAVTGEAILWGLS 624
            QV++ M S L QF  VM VV++GF M+   LFRD+  E     LL  F+AMLG   +F DF G ++D  AT+L+V YL ++T+MLLNLLIA+LST+H +V+E+     +VS+AR+  HY  VV  D LP PFNL QLVV +    V  L+        +P                     A+R  G ++FW +LG  A+ G   +W +S
Sbjct:  689 QVLYGMASELGQFFVVMGVVILGFAMSFFALFRDVKGETIRGALLDAFQAMLGEVGLFDDFVGEKHDLAATVLLVSYLVVMTIMLLNLLIAVLSTAHGKVEEAV--LIRVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCKMVDVLF----KGNTYPI--------------------ARRGVGRIVFWLLLGPGAILGGVFVWLVS 872          
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.980e-26
Identity = 83/207 (40.10%), Postives = 108/207 (52.17%), Query Frame = 1
Query:    4 VIFHMTSTLLQFGAVMLVVMIGFTMALHVLFRDLEDFSETLLKLFEAMLGGTEIFGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGTFKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLYFFPKAKKEHPDVYGRAFWRKVCEAARERGKRAKRAFGVVMFWFVLGLVAVTGEAILWGLS 624
            VIF MT+ L++FG VMLVVM+GF M+LHVL RD + F ET + LF+A LG  + F   S                      +LNLL+AIL+ SH++VQE+    FKVSKAR+I      V+ D LP PFN+ QL+ S     V                        +    R+R   AK+A G  + WFVLGL+A  G +ILW LS
Sbjct:  316 VIFAMTAQLVRFGIVMLVVMVGFAMSLHVLIRDSKSFGETFVALFKATLGDVDYFTASS----------------------VLNLLVAILTVSHSKVQENVQREFKVSKARMIQRCRWTVENDWLPAPFNVAQLLFSGQYALV------------------------MPSFRRKRYDEAKQAIGQAVSWFVLGLMAFVGGSILWILS 476          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7819.16769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZR6_ECTSI1.470e-8457.47Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KBU4_9PHAE3.710e-7956.58Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JG42_9PHAE7.770e-5046.40Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJG3_9PHAE4.690e-4652.15Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JUV2_9PHAE6.110e-4350.48Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
D7FLB1_ECTSI1.740e-4240.29Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5LDE6_9PHAE3.920e-3038.12Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMG8_9PHAE4.140e-2840.95Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR83_ECTSI3.240e-2740.48Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A6H5JCX0_9PHAE7.980e-2640.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7819contigL-elsbetiae_contig7819:3219..4420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.5
Seed ortholog evalue1.2e-73
Seed eggNOG ortholog2880.D7FZR6
KEGG koko:K04981
KEGG TC1.A.4.5.8
KEGG Pathwayko04978,map04978
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ion channel activity
EggNOG OGsKOG3614@1,KOG3614@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04040
Ec32 ortholog descriptionAnkyrin Repeat Transient Receptor Potential Channel
Ec32 orthologEc-21_004080.1
Exons1
Model size1202
Cds size903
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7819.16769.1prot_L-elsbetiae_contig7819.16769.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7819 3234..4136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.3107643-UTR-L-elsbetiae_contig7819:3218..32331622816866.3107643-UTR-L-elsbetiae_contig7819:3218..3233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7819 3219..3233 +
1691683872.453789-UTR-L-elsbetiae_contig7819:3218..32331691683872.453789-UTR-L-elsbetiae_contig7819:3218..3233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7819 3219..3233 +
1622816866.3366694-UTR-L-elsbetiae_contig7819:4136..44201622816866.3366694-UTR-L-elsbetiae_contig7819:4136..4420Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7819 4137..4420 +
1691683872.4832277-UTR-L-elsbetiae_contig7819:4136..44201691683872.4832277-UTR-L-elsbetiae_contig7819:4136..4420Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7819 4137..4420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.3242877-CDS-L-elsbetiae_contig7819:3233..41361622816866.3242877-CDS-L-elsbetiae_contig7819:3233..4136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7819 3234..4136 +
1691683872.467177-CDS-L-elsbetiae_contig7819:3233..41361691683872.467177-CDS-L-elsbetiae_contig7819:3233..4136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7819 3234..4136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7819.16769.1

>prot_L-elsbetiae_contig7819.16769.1 ID=prot_L-elsbetiae_contig7819.16769.1|Name=mRNA_L-elsbetiae_contig7819.16769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=301bp
MTSTLLQFGAVMLVVMIGFTMALHVLFRDLEDFSETLLKLFEAMLGGTEI
FGDFSGGRYDTVATILVVVYLFIVTMMLLNLLIAILSTSHARVQESAGGT
FKVSKARIIDHYGTVVDEDLLPTPFNLMQLVVSMAVFFVTFLYFFPKAKK
EHPDVYGRAFWRKVCEAARERGKRAKRAFGVVMFWFVLGLVAVTGEAILW
GLSGFSYAQYVLYVEVRSVLYLGFNSRADFTRGSSRMLQGVLIALACSYD
WGLTSLAWFLILLWCILVAPLWLFFYVALSACSGACFWEASRFLLKEDRR
*
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mRNA from alignment at L-elsbetiae_contig7819:3219..4420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7819.16769.1 ID=mRNA_L-elsbetiae_contig7819.16769.1|Name=mRNA_L-elsbetiae_contig7819.16769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1202bp|location=Sequence derived from alignment at L-elsbetiae_contig7819:3219..4420+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGATCTTCCACATGACGTCGACACTGTTACAGTTCGGTGCCGTGAT GCTGGTTGTTATGATCGGGTTCACGATGGCGCTCCACGTTCTCTTCCGTG ACTTGGAAGACTTCAGCGAAACCCTGCTCAAGCTGTTTGAAGCTATGCTC GGCGGCACTGAAATCTTCGGCGACTTCTCCGGCGGACGATACGATACTGT TGCGACCATCCTGGTTGTCGTTTACCTGTTCATCGTGACGATGATGCTCC TCAACCTCCTGATTGCAATATTGAGCACTTCCCATGCTCGGGTACAGGAA AGTGCGGGTGGAACGTTCAAGGTGTCGAAGGCGCGCATTATTGACCATTA TGGGACGGTTGTAGATGAGGACTTGCTCCCTACCCCCTTCAACTTGATGC AGCTGGTTGTATCAATGGCTGTGTTTTTTGTCACGTTTCTGTACTTTTTC CCCAAGGCAAAGAAAGAGCACCCTGATGTGTACGGCCGCGCTTTCTGGAG GAAGGTTTGTGAAGCGGCGAGGGAACGGGGAAAAAGGGCTAAGCGAGCCT TTGGGGTAGTAATGTTTTGGTTCGTGCTGGGTCTTGTAGCTGTAACTGGA GAGGCGATACTATGGGGCCTCTCCGGGTTCTCGTACGCTCAGTATGTGTT GTACGTGGAGGTGAGATCAGTGCTGTACCTGGGGTTCAATAGTAGAGCGG ATTTCACACGTGGTTCGTCGCGGATGCTTCAGGGTGTGCTGATCGCTCTC GCGTGTTCATATGACTGGGGTTTGACCTCGCTCGCCTGGTTTTTGATTCT CTTGTGGTGCATTCTGGTTGCTCCATTATGGCTTTTTTTTTACGTGGCTC TTAGCGCTTGTTCGGGCGCTTGTTTCTGGGAAGCTAGCCGCTTTTTGCTC AAAGAAGACAGGCGATGACCAAGAACTCTCCAGGCGCCCCACAATAGAGA GCATGCTAAGGAAGGCCCCTGGCGGCGTAGGCGCGGAGAAGCTGCGTGAA TTTCTCCAAGACCCGATGGACGACGAGTATGTTCGCCAGGACGAGAAGGG CAGGAAGACCACGGTAGAACACATCAAGCTCCTCCGGAACCGCCTCGAAA AGACAACCAAGGAAGAGCTCAACGAGTTGCGCAACGATGTGGTAACCAAG AGCGACCTGAAAGAGATACTGGAGAGCCTTCACACAACAACCAAGGGGGA GC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7819:3219..4420+

>mRNA_L-elsbetiae_contig7819.16769.1 ID=mRNA_L-elsbetiae_contig7819.16769.1|Name=mRNA_L-elsbetiae_contig7819.16769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1806bp|location=Sequence derived from alignment at L-elsbetiae_contig7819:3219..4420+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTCGACACTGTTACAGTTCGGTGCCGTGATGCTGGTTGTTATGAT
CGGGTTCACGATGGCGCTCCACGTTCTCTTCCGTGACTTGGAAGACTTCA
GCGAAACCCTGCTCAAGCTGTTTGAAGCTATGCTCGGCGGCACTGAAATC
TTCGGCGACTTCTCCGGCGGACGATACGATACTGTTGCGACCATCCTGGT
TGTCGTTTACCTGTTCATCGTGACGATGATGCTCCTCAACCTCCTGATTG
CAATATTGAGCACTTCCCATGCTCGGGTACAGGAAAGTGCGGGTGGAACG
TTCAAGGTGTCGAAGGCGCGCATTATTGACCATTATGGGACGGTTGTAGA
TGAGGACTTGCTCCCTACCCCCTTCAACTTGATGCAGCTGGTTGTATCAA
TGGCTGTGTTTTTTGTCACGTTTCTGTACTTTTTCCCCAAGGCAAAGAAA
GAGCACCCTGATGTGTACGGCCGCGCTTTCTGGAGGAAGGTTTGTGAAGC
GGCGAGGGAACGGGGAAAAAGGGCTAAGCGAGCCTTTGGGGTAGTAATGT
TTTGGTTCGTGCTGGGTCTTGTAGCTGTAACTGGAGAGGCGATACTATGG
GGCCTCTCCGGGTTCTCGTACGCTCAGTATGTGTTGTACGTGGAGGTGAG
ATCAGTGCTGTACCTGGGGTTCAATAGTAGAGCGGATTTCACACGTGGTT
CGTCGCGGATGCTTCAGGGTGTGCTGATCGCTCTCGCGTGTTCATATGAC
TGGGGTTTGACCTCGCTCGCCTGGTTTTTGATTCTCTTGTGGTGCATTCT
GGTTGCTCCATTATGGCTTTTTTTTTACGTGGCTCTTAGCGCTTGTTCGG
GCGCTTGTTTCTGGGAAGCTAGCCGCTTTTTGCTCAAAGAAGACAGGCGA
TGAATGACGTCGACACTGTTACAGTTCGGTGCCGTGATGCTGGTTGTTAT
GATCGGGTTCACGATGGCGCTCCACGTTCTCTTCCGTGACTTGGAAGACT
TCAGCGAAACCCTGCTCAAGCTGTTTGAAGCTATGCTCGGCGGCACTGAA
ATCTTCGGCGACTTCTCCGGCGGACGATACGATACTGTTGCGACCATCCT
GGTTGTCGTTTACCTGTTCATCGTGACGATGATGCTCCTCAACCTCCTGA
TTGCAATATTGAGCACTTCCCATGCTCGGGTACAGGAAAGTGCGGGTGGA
ACGTTCAAGGTGTCGAAGGCGCGCATTATTGACCATTATGGGACGGTTGT
AGATGAGGACTTGCTCCCTACCCCCTTCAACTTGATGCAGCTGGTTGTAT
CAATGGCTGTGTTTTTTGTCACGTTTCTGTACTTTTTCCCCAAGGCAAAG
AAAGAGCACCCTGATGTGTACGGCCGCGCTTTCTGGAGGAAGGTTTGTGA
AGCGGCGAGGGAACGGGGAAAAAGGGCTAAGCGAGCCTTTGGGGTAGTAA
TGTTTTGGTTCGTGCTGGGTCTTGTAGCTGTAACTGGAGAGGCGATACTA
TGGGGCCTCTCCGGGTTCTCGTACGCTCAGTATGTGTTGTACGTGGAGGT
GAGATCAGTGCTGTACCTGGGGTTCAATAGTAGAGCGGATTTCACACGTG
GTTCGTCGCGGATGCTTCAGGGTGTGCTGATCGCTCTCGCGTGTTCATAT
GACTGGGGTTTGACCTCGCTCGCCTGGTTTTTGATTCTCTTGTGGTGCAT
TCTGGTTGCTCCATTATGGCTTTTTTTTTACGTGGCTCTTAGCGCTTGTT
CGGGCGCTTGTTTCTGGGAAGCTAGCCGCTTTTTGCTCAAAGAAGACAGG
CGATGA
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