mRNA_L-elsbetiae_contig781.16760.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig781.16760.1 vs. uniprot
Match: D7FGT9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT9_ECTSI) HSP 1 Score: 674 bits (1739), Expect = 4.330e-224 Identity = 421/741 (56.82%), Postives = 494/741 (66.67%), Query Frame = 1 Query: 691 ARGGDTELVELLIGPTGKADIGLRDGDXXXXXXXXXXXXHLGVVRILAEKAGADLGARDRSDKSPLDVAVVNANTDIADYLRDMLPDTHLEQQHSCKERGGFERAGRWMRLSRATGYLQDLALDSVFLMPVATLLEIGRFPSYYDASRKKQLVAGSAISPQSQVLFVSHPWESPGNPDPSGKQFLALRRFLE-EARGGXXXXXXXXXX------------GYVWLSFSCTSSNRMKPTFQTHLNNVLTAWCFSDHALVIPETVTRPSEGFTYTDVEGFVERGWCCVELLCVLHLDVPTTLHVALEDALSDTVTKWQLSPSEER--------------DAELELIPPSSVFELLSTEKRRLDTPSERSQQRSASPEKSPSPGRNEAFQSDRSSLSDAEGDGGGSARL-RLSAGQCVTRAMEAASRRLSSSPAAASA--------PAPAVIAANRDGGAFEDGRAKDGAPTGNGTSSQXXXXXXXXXEESTEESEHIVSLIWSTGAEAYLDSIAQLVADVLRSLDDEVSRDARAA-AVGDGGEAREAKSTEGEVLKDSKAGLLLARILSLGLEKQDVEDDGGGGEAGEAEACPLVRELYEKLGSFSSTHEKLDAVKTLLLAGCYFEGVRATSTRASRGSSPKLASRAGGE-------ADLAHKERGRFSGKGSLESGGDANRRERASGGGDKESGR----------------KSRPSSGGGTAEA-GNTAPMVARSVPSCHVS 2730 ARGGDT+LVELL GP G+ADIGLRDG HLGVV++L EKAGADLGARD SDKS LDVAV NTD+ADYLR+ LP+ H E+ H CK R GFERAGRWMRL+RA G+LQ+LAL++V+L+PV+ LL++GRFPS+YDASR+KQLVA S ISPQSQVL V+HPWESPGNPDPSGKQF ALRRFLE +A GG XXXX GYVWLSFSCTSSNRM+P FQTHL+NVLTAWCF DHALV+PETVTR +EGFTYTDVEG+VERGWCCV+LLC LHLDVP T+HVAL+DALS+ VT QLS E R + E E +PPSSVFEL+S S++ +AS S G ++ +RS S + G +AR SAG C+TRA++AASRRLSS PA A A P PA I G D A P S E+ TEES HI +LIWS+GAEA+LDSI +LVAD+L+SLDDEVS D + A G GG R+ EG + +DSKAGLLLAR+L+LG++KQDVE+DGGGGE GEA+ACPL+RELYEKLG+FSS+H++LDAVKTLLLAGCYFEGVRA+S SRG SP+ A A G + L K+R R E D R R SGGGD K PSS GG AEA G AP++A SVPSCHVS Sbjct: 423 ARGGDTDLVELLTGPLGRADIGLRDGTGSQALHIAAGCGHLGVVKVLVEKAGADLGARDSSDKSALDVAVARVNTDVADYLREALPEGHRER-HRCKRRRGFERAGRWMRLARAEGFLQNLALENVYLLPVSVLLDVGRFPSHYDASRRKQLVAASDISPQSQVLLVTHPWESPGNPDPSGKQFSALRRFLEGKAMGGSTDGGEXXXXXXXXXDSADEGFGYVWLSFSCTSSNRMRPAFQTHLDNVLTAWCFCDHALVLPETVTRAAEGFTYTDVEGYVERGWCCVKLLCALHLDVPMTMHVALKDALSEAVTNCQLSSPERRGVEGGXXXXXXGGAEVEPENLPPSSVFELISA-----------SEEGTASQVSGESVGSHD----ERSQGSGHQCSGAATARRPHSSAGVCMTRAVQAASRRLSSCPADAGAAGAACSPMPPPAEIPP----GGERDSAASVSGPGPAVHSPPDGGIFPEHREQPTEESAHIANLIWSSGAEAHLDSITRLVADILKSLDDEVSTDMKEGLATGGGGNTRDVIPGEG-IPEDSKAGLLLARVLNLGMDKQDVEEDGGGGEGGEAKACPLLRELYEKLGNFSSSHDRLDAVKTLLLAGCYFEGVRASSGHCSRGPSPEHAKLADGRRGLPPAPSSLGAKDRDR-----ECERDNDMGGRGRISGGGDXXXXXXXXXXXXXXXXXXXXXKPSPSSRGGRAEAAGKAAPLLAGSVPSCHVS 1137
BLAST of mRNA_L-elsbetiae_contig781.16760.1 vs. uniprot
Match: A0A6H5KTJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ5_9PHAE) HSP 1 Score: 661 bits (1706), Expect = 1.220e-222 Identity = 409/735 (55.65%), Postives = 486/735 (66.12%), Query Frame = 1 Query: 694 RGGDTELVELLIGPTGKADIGLRDGDXXXXXXXXXXXXHLGVVRILAEKAGADLGARDRSDKSPLDVAVVNANTDIADYLRDMLPDTHLEQQHSCKERGGFERAGRWMRLSRATGYLQDLALDSVFLMPVATLLEIGRFPSYYDASRKKQLVAGSAISPQSQVLFVSHPWESPGNPDPSGKQFLALRRFLEE-----------ARGGXXXXXXXXXXG--YVWLSFSCTSSNRMKPTFQTHLNNVLTAWCFSDHALVIPETVTRPSEGFTYTDVEGFVERGWCCVELLCVLHLDVPTTLHVALEDALSDTVTKWQLSPSEER---------DAELELIPPSSVFELLSTEKRRLDTPSERSQQRSASPEKSPSPGRNEAFQSDRSSLSDAEGDGGGSARL-RLSAGQCVTRAMEAASRRLSSSPAAASA----------PAPAVIAANRDGGAFEDGRAKDGAPTGNGTSSQXXXXXXXXXEESTEESEHIVSLIWSTGAEAYLDSIAQLVADVLRSLDDEVSRDARAAAVGDGGEAREAKSTEGEVLKDSKAGLLLARILSLGLEKQDVEDDGGGGEAGEAEACPLVRELYEKLGSFSSTHEKLDAVKTLLLAGCYFEGVRATSTRASRGSSPKLASRAGG-------EADLAHKERGRFSGKGSLESGGDANRRERASGGGDKES----------------GRKSRPSSGGGTAEAGNTAPMVARSVPSCHVS 2730 RGGDT+LVELL GP G+ADIGLRDG HLGVV++L EKAGADLGARD SDKS LDVAV NT++ADYLR+ LP+ H E+ H CK R GFERAGRWMRL+RA G+LQ+LAL++V+L+PV+ LL++GRFPS+YDASRKKQLVA S ISPQSQVL V+HPWESPGNPDPSGKQF ALRRFL+E RGG G YVWLSFSCTSSNRM+P FQTHL+NVLTAWCF DHALV+PETVTR +EGF YTDVEG+VERGWCCVELLC LHL+VPTT+HVAL+DALS+ VT QLS + R + E + +PPSSVFEL+S S++ +AS S G + +RS S + G +AR S G C+TRA++AA+RRLSS PA A+A PA + RD AF G T +G + TEES HI +LIWS+GAEA+LDSI +LVAD+L+SLD+EVS D A G GG R+ S EG + +DSKAGLLLAR+L+LG+EKQDVE+DGG E GEA+ACPL+RELYEKLG+FSS+H++LDAVKTLLLAGCY EGVRA+S SRG SP A A G + L K+R R E D + R R SGGGD G K PSS GG AEA AP++A SVPSCHVS Sbjct: 170 RGGDTDLVELLTGPFGRADIGLRDGTGSQALHIAAGCGHLGVVKVLVEKAGADLGARDSSDKSALDVAVARVNTEVADYLREALPEGHRER-HRCKRRRGFERAGRWMRLARAGGFLQNLALENVYLLPVSVLLDVGRFPSHYDASRKKQLVAASDISPQSQVLLVTHPWESPGNPDPSGKQFSALRRFLDEKATAGSADGGKGRGGSAEGGDSADEGFGYVWLSFSCTSSNRMRPAFQTHLDNVLTAWCFCDHALVLPETVTRAAEGFAYTDVEGYVERGWCCVELLCALHLEVPTTIHVALKDALSEAVTNCQLSSPQRRGGEGGGGGAEIEPDNLPPSSVFELISA-----------SEEGTASQVSGESVGSYD----ERSQGSGHQCSGAAAARRPHSSVGMCMTRAVQAAARRLSSCPADAAAASAACSPMPPPAETPPSGERDSAAFVSGLGPAVHSTPDG------GIFPEHRAQPTEESAHIANLIWSSGAEAHLDSITRLVADILKSLDEEVSTDMEGLATGGGGNTRDVLSGEG-IPEDSKAGLLLARVLNLGMEKQDVEEDGGR-EGGEAKACPLLRELYEKLGNFSSSHDRLDAVKTLLLAGCYCEGVRASSEHRSRGPSPAHAKLADGGRGLPPAPSSLGAKDRER-----ECERDNDMSGRGRVSGGGDXXXXXXXXXXXXXXXXXLRGGKPSPSSRGGRAEA---APLLAASVPSCHVS 872
BLAST of mRNA_L-elsbetiae_contig781.16760.1 vs. uniprot
Match: A0A7S2UVB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVB7_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.930e-11 Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 1030 ATGYLQDLALDSVFLMPVATLLEIGRFPSYYDASRKKQLVAGSAISPQSQVLFVSHPWESPGNPDPSGKQFLALRRFL 1263 A+ L+ + L +V L+PV L+ G+FPSY + S LV+ I+P + VL+VSH WE P PDP G Q+ +R F+ Sbjct: 22 ASRRLEGIDLANVHLLPVQAFLDAGKFPSYVEVSSAGLLVSADKIAPDAGVLYVSHRWERPWQPDPRGMQYALVRAFV 99 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig781.16760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig781.16760.1 >prot_L-elsbetiae_contig781.16760.1 ID=prot_L-elsbetiae_contig781.16760.1|Name=mRNA_L-elsbetiae_contig781.16760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=911bp MKCWSRLTLNQVDVKDDKGCTPCLMAALNGRLETIELLVDRFKSKITVCDback to top mRNA from alignment at L-elsbetiae_contig781:24488..32321- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig781.16760.1 ID=mRNA_L-elsbetiae_contig781.16760.1|Name=mRNA_L-elsbetiae_contig781.16760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7834bp|location=Sequence derived from alignment at L-elsbetiae_contig781:24488..32321- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig781:24488..32321- >mRNA_L-elsbetiae_contig781.16760.1 ID=mRNA_L-elsbetiae_contig781.16760.1|Name=mRNA_L-elsbetiae_contig781.16760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5466bp|location=Sequence derived from alignment at L-elsbetiae_contig781:24488..32321- (Laminarionema elsbetiae ELsaHSoW15)back to top |