mRNA_L-elsbetiae_contig7804.16756.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7804.16756.1
Unique NamemRNA_L-elsbetiae_contig7804.16756.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7804.16756.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 2.410e-57
Identity = 98/126 (77.78%), Postives = 105/126 (83.33%), Query Frame = 1 
Query:    1 MTVHSAELAAAEAXXXXXXXXSAAGPSDHWRRWKTDGLDSLGMTLADLAHAWDAHRLHLPLSTFERLPRDVVLFRVLDRVQSPDWLPEEISHHVLPLAKRYGLDPDAVLLDYMRICADTMAPRCRA 378
            + +HSAELAAAEA           GPSDHW+RWK DGLD+LG TL DL HAWD HRL LPLSTFERLPRDVVLFRVLDRVQSPDWLPEEI+HHVLPLAKRYGLDPD+VLLDYMRICA+TM  R RA
Sbjct:  965 LAIHSAELAAAEAEAAARR----TGPSDHWKRWKPDGLDALGKTLDDLTHAWDVHRLRLPLSTFERLPRDVVLFRVLDRVQSPDWLPEEINHHVLPLAKRYGLDPDSVLLDYMRICAETMVTRRRA 1086
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BLAST of mRNA_L-elsbetiae_contig7804.16756.1 vs. uniprot
Match: A0A835ZDW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW9_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.320e-20
Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:  112 LDSLGMTLADLAHAWDAHRLHLPLSTFERLPRDVVLFRVLDRVQSPDWLPEEISHHVLPLAKRYGLDPDAVLLDYMRICADTMAPRCRA 378
            L+ L   L DLAH WDAH L LPL  +E L  + V+F+ LDRVQSP  LP+ +  H LPL  RYGL  D VLL Y R CA  +A R  A
Sbjct:  766 LEGLAARLLDLAHLWDAHLLRLPLREYEGLAPEAVVFKALDRVQSPALLPQHVQQHALPLCARYGLSADDVLLAYARKCAAAVAGRSGA 854
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BLAST of mRNA_L-elsbetiae_contig7804.16756.1 vs. uniprot
Match: A0A6H5KQ38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ38_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.790e-6
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 MTVHSAELAAAEAXXXXXXXXSAAGPSDHWRRWKTDGLDSLGMTL 135
            + VHSAELAAAEA           GPSDHW+RWK DGLD+LG TL
Sbjct:  878 LAVHSAELAAAEAEAAARR----TGPSDHWKRWKPDGLDALGKTL 918
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7804.16756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSU3_ECTSI2.410e-5777.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDW9_9STRA9.320e-2052.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KQ38_9PHAE4.790e-662.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7804contigL-elsbetiae_contig7804:5259..8224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size391
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7804.16756.1prot_L-elsbetiae_contig7804.16756.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7804 5259..8224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816864.9015675-CDS-L-elsbetiae_contig7804:5258..53941622816864.9015675-CDS-L-elsbetiae_contig7804:5258..5394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7804 5259..5394 +
1691683871.408586-CDS-L-elsbetiae_contig7804:5258..53941691683871.408586-CDS-L-elsbetiae_contig7804:5258..5394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7804 5259..5394 +
1622816864.9138613-CDS-L-elsbetiae_contig7804:6488..65951622816864.9138613-CDS-L-elsbetiae_contig7804:6488..6595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7804 6489..6595 +
1691683871.4192324-CDS-L-elsbetiae_contig7804:6488..65951691683871.4192324-CDS-L-elsbetiae_contig7804:6488..6595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7804 6489..6595 +
1622816864.9292793-CDS-L-elsbetiae_contig7804:7472..75731622816864.9292793-CDS-L-elsbetiae_contig7804:7472..7573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7804 7473..7573 +
1691683871.4292579-CDS-L-elsbetiae_contig7804:7472..75731691683871.4292579-CDS-L-elsbetiae_contig7804:7472..7573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7804 7473..7573 +
1622816864.9400775-CDS-L-elsbetiae_contig7804:8178..82241622816864.9400775-CDS-L-elsbetiae_contig7804:8178..8224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7804 8179..8224 +
1691683871.4396899-CDS-L-elsbetiae_contig7804:8178..82241691683871.4396899-CDS-L-elsbetiae_contig7804:8178..8224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7804 8179..8224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7804.16756.1

>prot_L-elsbetiae_contig7804.16756.1 ID=prot_L-elsbetiae_contig7804.16756.1|Name=mRNA_L-elsbetiae_contig7804.16756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MTVHSAELAAAEAAVAAAAARSAAGPSDHWRRWKTDGLDSLGMTLADLAH
AWDAHRLHLPLSTFERLPRDVVLFRVLDRVQSPDWLPEEISHHVLPLAKR
YGLDPDAVLLDYMRICADTMAPRCRAKVSP
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mRNA from alignment at L-elsbetiae_contig7804:5259..8224+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7804.16756.1 ID=mRNA_L-elsbetiae_contig7804.16756.1|Name=mRNA_L-elsbetiae_contig7804.16756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2966bp|location=Sequence derived from alignment at L-elsbetiae_contig7804:5259..8224+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGTGCACTCGGCGGAGCTCGCCGCGGCGGAGGCGGCGGTGGCGGC
GGCGGCGGCGAGGTCGGCGGCGGGCCCTTCGGACCACTGGAGGCGCTGGA
AGACCGACGGGCTGGACTCTTTGGGGATGACGCTCGGTAAGGAAGTAAAT
AGGGAAGGTTTTTTTTTGTTCTTTTTTTTTCCAAAATTACATATTATTCG
TGTTTCATCGTGACTCGGTTACATACACAATTACAGTAGTTATTCTTGAA
AAGCTGTGTTGGTAAAACACGATTTTCTGTAGGTTTGGTGATAAATATTT
TTTTCGTGTCCATTGCTTGTGTGTGTGTCGGTCTTTATCTCTCTCGTGAA
GTCATAGACGTTGTTCCACTACTGTAGACTGTGGGTGTCTTCACGGGGGT
GCACCGACGTTAAATCGTCTTGAAACCACTTGAAGCGTTGGAGGCCCGAC
GGTGCGGACTTTCTGGGGAGGGCTTTCGTTGAGGCAGGCCTGTACGTACA
CTCGTCAAACGTGATTTTTTTTTTCCCGTTCTCGTACACGACTTGATTAC
AAAGAGAGGCCTCTGTTAGAGGCAGCTTTTGTTGTTTGTCTTCTGTGTGT
ACTTAATTAGGTACATACGTGGCGTCTGGTTTCTTTTTTGGGAGCTGAGG
TAAGCGCCCCTTTCCAAGAAAAAAAGTCAATACCTTGTGCGGTGTCATGT
CATCGTGGGGCCTTGCTCGTGACTTGTGACACGTTGTTCTAAGATGTACC
ATCAGTCTGGTACTTGGTTAACCTTTTACCAGCTCATGGCTGAGTGGTCT
TTTCCCTTAACAATATTGCAATTGCGTCGTCCTGGTATGGTACATTTTGT
AACACTGTCTCGTATCACGTTTGCCCGCCCGCTCAATCGTTATATTTTCT
CTGGCGCTGGCTGGTTGCTTGCCGTGCTTGTGAATTTTGCTCGCACACGC
TGCCTTGCCTTGCCGATTCGTTTCAAGTAGTTTCGTTTCGTTTCGTTTCG
TTTCGTTTCATTTAGTTTCCGTTTCATCTCGTTCCGTTTCATCTCGTTTC
GTGCCGTTTATTCTAGTTCCGTTTCATTTCGTTTCGTTTCATTTCGTTCC
GTTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGTGGGCGTCGGTTCG
GAACGGTGTGGCGGTCGGTCGGCTTGCCGGGTCGGCGGGGGGTGCTGTCG
ATCGGTTCCATGACGTCACGCATGACACAGCTGATCTGGCGCACGCGTGG
GACGCGCACCGGCTCCACCTGCCGCTGTCGACGTTCGAGCGACTGCCGAG
GGATGTCGTGCTCTTCCGCGTGCTGGACAGGGTGCAGGTAAGTCTAGTCA
GTTAGTCGGGGTGGGGTGGCTCTCTCCTCCCCTGTTCTTATTATTTTTGG
TGTTTTTGCTGTTGCTTGCTGGATGGGGGCATGCGAGATCCAGCCCGCTC
GATTTCTCGGCATACCAACTGGCTTGCCTGCGTCTGAATGTTTGTGCCGC
TGTTGTTGCTGTTGTTGCTGCCGTTGTTGATGTTGTACCGTCGCGTTGTT
GTCGTCGTCCTTCTCTTCGCGTTGCGAGACCCGTTCGAAGTCGGTTTCGC
TCCCCGCACCACCACGTACGTTCCGTGCTGATCGATCGAAACAACGAGCG
ATAGAGACAGCCCCCCCCCCCCCGTGGTAGGTCGCGTTACAGGCCAAGCC
GCCGTTCGATAAATATGCTTTTTGCGGTTTTTCAGTTTTGGTAAAGTCAC
GGTGCGGTGCGGTGCGGTTAAATCGCTGTCACAAATATTACGGTTTTTCA
CGCTGCGGTTAACCGCTGTTTCAAATGTTGCGGTTTTTCACGGTGCGGTT
AACCGCTGTTTCAAATATTACGGTTTTTCGCAGTGCGGTGCGGTGCGGTG
CGGTTTTGAGAACCGCACCGCGGTTCGGTGTAACCGTGAGAAAAACCGCA
CCGTACAGAGCCCTGTTTTTTTTTCGTCCTCCTATATACATGCTGCTAAA
TAGCTGTGATTTAATTAACGCCCGAGCCAAGCAAGGGCCCCGCTCTTAAG
ATAATATATTTTTAACTAATGTATACACATGTCAGCAGTCTACGTCCAGT
CTGTGAAAAGACGTTCCAGAGGGACTGTTGTAGGCATACATACTAACCCC
CCTTTCCCCCTCCTTATTTTCTCCGTTTTTGTTGCTGTTTTTTTTGGGGG
GGGGGGGTAAAAAGAGTCCCGATTGGCTCCCCGAGGAGATCAGCCACCAC
GTGCTGCCGCTCGCGAAACGATACGGGCTGGACCCTGACGCCGTTCTTCT
GGACTACATGCGCATGTGAGGGGGGAGCAGAGGGGATACTTGAGCTGCAT
GCAGCAGTATGCATCATATGTAGGTGCTTCTACACACTCATTGTACATAA
ATAGAAGTACTAGAAACGTGCTGCTTGCTGCCTGTGCCTGCCCTTTTTTG
TTGTTTTTTTGCACACCGGTACATATGTATGCCTGTACTTCGACCTCACC
GTCGACCAGGGAAAGAGACGGCTGAATGGACCCTTCTCGCGATAAATATC
TCATTTAGGCAAGCACCGCAGAATTTGGGGCTGGGGGGGGGTTCGGGGAG
AGGAACCCTTCTGTGCGACCACGGGATTCAGTTTAGTATCTATCGCCTGG
CGCGTGTGTGTGTACCTTTTGTAATTTTGGTTTTGCTTTGTTCTTGAGCG
GCGTCGAGTGTGTTGGAATCATGCAGAGAGCTAATGCGAGAAGCAAAAAA
AAACAGCCTGGAACGGGGACATTGTTTTGCCCTTGCCTTCTCGGGGGGTG
ACTTTTCCTGCTTGCCTCTGCACTTTTCTGTCCCGACTACATGTACAGTA
GGAGCAAAGGGACACACGCCCACCGTCTCCCACCCCCTCCCATTCCTTCC
CCTCCCCCCCCGAACACCAGATGCGCCGATACCATGGCACCCCGGTGCCG
CGCGAAAGTCAGCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7804:5259..8224+

>mRNA_L-elsbetiae_contig7804.16756.1 ID=mRNA_L-elsbetiae_contig7804.16756.1|Name=mRNA_L-elsbetiae_contig7804.16756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig7804:5259..8224+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGTGCACTCGGCGGAGCTCGCCGCGGCGGAGGCGGCGGTGGCGGC
GGCGGCGGCGAGGTCGGCGGCGGGCCCTTCGGACCACTGGAGGCGCTGGA
AGACCGACGGGCTGGACTCTTTGGGGATGACGCTCGATGACGGTGCACTC
GGCGGAGCTCGCCGCGGCGGAGGCGGCGGTGGCGGCGGCGGCGGCGAGGT
CGGCGGCGGGCCCTTCGGACCACTGGAGGCGCTGGAAGACCGACGGGCTG
GACTCTTTGGGGATGACGCTCGCTGATCTGGCGCACGCGTGGGACGCGCA
CCGGCTCCACCTGCCGCTGTCGACGTTCGAGCGACTGCCGAGGGATGTCG
TGCTCTTCCGCGTGCTGGACAGGGTGCAGCTGATCTGGCGCACGCGTGGG
ACGCGCACCGGCTCCACCTGCCGCTGTCGACGTTCGAGCGACTGCCGAGG
GATGTCGTGCTCTTCCGCGTGCTGGACAGGGTGCAGAGTCCCGATTGGCT
CCCCGAGGAGATCAGCCACCACGTGCTGCCGCTCGCGAAACGATACGGGC
TGGACCCTGACGCCGTTCTTCTGGACTACATGCGCATAGTCCCGATTGGC
TCCCCGAGGAGATCAGCCACCACGTGCTGCCGCTCGCGAAACGATACGGG
CTGGACCCTGACGCCGTTCTTCTGGACTACATGCGCATATGCGCCGATAC
CATGGCACCCCGGTGCCGCGCGAAAGTCAGCCCCATGCGCCGATACCATG
GCACCCCGGTGCCGCGCGAAAGTCAGCCCC
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