mRNA_L-elsbetiae_contig7794.16740.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7794.16740.1
Unique NamemRNA_L-elsbetiae_contig7794.16740.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7794.16740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7794contigL-elsbetiae_contig7794:2543..2941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816863.2963972-CDS-L-elsbetiae_contig7794:2542..29411622816863.2963972-CDS-L-elsbetiae_contig7794:2542..2941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7794 2543..2941 +
1691683870.1125288-CDS-L-elsbetiae_contig7794:2542..29411691683870.1125288-CDS-L-elsbetiae_contig7794:2542..2941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7794 2543..2941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7794.16740.1prot_L-elsbetiae_contig7794.16740.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7794 2543..2941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7794.16740.1

>prot_L-elsbetiae_contig7794.16740.1 ID=prot_L-elsbetiae_contig7794.16740.1|Name=mRNA_L-elsbetiae_contig7794.16740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
ALRPLSPSSSPKPWGIGGGGGKRSGEGALAPFAGTPGSISHAYRSFIMIQ
GFCLKNRHGNDGFSEEYEEMIHVCTPWSFIYLVSNCLSSMGGIGYGLVWL
RRILPVGYYYLDVQTGWGKTFLIAVRLLAFML*
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mRNA from alignment at L-elsbetiae_contig7794:2543..2941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7794.16740.1 ID=mRNA_L-elsbetiae_contig7794.16740.1|Name=mRNA_L-elsbetiae_contig7794.16740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=399bp|location=Sequence derived from alignment at L-elsbetiae_contig7794:2543..2941+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCTTCGTCCTTTATCTCCTTCTTCCAGCCCCAAACCTTGGGGGATTGG
GGGCGGGGGGGGCAAGCGCAGTGGGGAGGGTGCACTGGCCCCATTTGCCG
GAACACCAGGAAGCATCTCACATGCGTACAGGAGCTTTATCATGATTCAA
GGCTTCTGCCTCAAAAACCGGCATGGGAATGATGGATTTAGTGAGGAATA
CGAGGAAATGATTCATGTATGTACACCATGGAGTTTCATATATCTTGTGT
CTAATTGTCTGAGTTCCATGGGCGGTATCGGCTACGGGTTGGTTTGGCTC
CGCCGAATTCTCCCTGTAGGGTATTACTATTTAGATGTTCAAACCGGCTG
GGGCAAGACTTTTTTGATTGCCGTCCGTCTTCTTGCGTTTATGCTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7794:2543..2941+

>mRNA_L-elsbetiae_contig7794.16740.1 ID=mRNA_L-elsbetiae_contig7794.16740.1|Name=mRNA_L-elsbetiae_contig7794.16740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig7794:2543..2941+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCTTCGTCCTTTATCTCCTTCTTCCAGCCCCAAACCTTGGGGGATTGG
GGGCGGGGGGGGCAAGCGCAGTGGGGAGGGTGCACTGGCCCCATTTGCCG
GAACACCAGGAAGCATCTCACATGCGTACAGGAGCTTTATCATGATTCAA
GGCTTCTGCCTCAAAAACCGGCATGGGAATGATGGATTTAGTGAGGAATA
CGAGGAAATGATTCATGTATGTACACCATGGAGTTTCATATATCTTGTGT
CTAATTGTCTGAGTTCCATGGGCGGTATCGGCTACGGGTTGGTTTGGCTC
CGCCGAATTCTCCCTGTAGGGTATTACTATTTAGATGTTCAAACCGGCTG
GGGCAAGACTTTTTTGATTGCCGTCCGTCTTCTTGCGTTTATGCTGTAGG
CTCTTCGTCCTTTATCTCCTTCTTCCAGCCCCAAACCTTGGGGGATTGGG
GGCGGGGGGGGCAAGCGCAGTGGGGAGGGTGCACTGGCCCCATTTGCCGG
AACACCAGGAAGCATCTCACATGCGTACAGGAGCTTTATCATGATTCAAG
GCTTCTGCCTCAAAAACCGGCATGGGAATGATGGATTTAGTGAGGAATAC
GAGGAAATGATTCATGTATGTACACCATGGAGTTTCATATATCTTGTGTC
TAATTGTCTGAGTTCCATGGGCGGTATCGGCTACGGGTTGGTTTGGCTCC
GCCGAATTCTCCCTGTAGGGTATTACTATTTAGATGTTCAAACCGGCTGG
GGCAAGACTTTTTTGATTGCCGTCCGTCTTCTTGCGTTTATGCTGTAG
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