mRNA_L-elsbetiae_contig7791.16738.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7791.16738.1
Unique NamemRNA_L-elsbetiae_contig7791.16738.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7791.16738.1 vs. uniprot
Match: D8LIS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIS6_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.300e-44
Identity = 86/104 (82.69%), Postives = 89/104 (85.58%), Query Frame = 2 
Query:    2 ASRRQLTNLCQSSGTPTGFECLTRYLLGNRYPS----------GGGSHRVDTPRVRKCFSALAAQVGNHPDRGPLDYHALGVGRCVFTLRRERVAALAASAAAA 283
            ASRRQLTNLCQS+GTPTGF+CLTRYLLGNRYP           G GS+RVDTPRVRKCFSALAAQVGNHPDRG LDYHALGVGRCVFTLRR RVAALAASA AA
Sbjct:  315 ASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQPTGPASNSRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAASANAA 418
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BLAST of mRNA_L-elsbetiae_contig7791.16738.1 vs. uniprot
Match: A0A6H5K430_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K430_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.250e-42
Identity = 89/120 (74.17%), Postives = 94/120 (78.33%), Query Frame = 2 
Query:    2 ASRRQLTNLCQSSGTPTGFECLTRYLLGNRYPS----------GGGSHRVDTPRVRKCFSALAAQVGNHPDRGPLDYHALGVGRCVFTLRRERVAALAASAAAATAKLTPPNPANLPPRP 331
            ASRRQLTNLCQS+GTPTGF+CLTRYLLGNRYP           G GS+RVDTPRVRKCFSALAAQVGNHPDRG LDYHALGVGRCVFTLRR RVAALAA       +L PP  +  PPRP
Sbjct:  823 ASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQPTGPGSSSRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAA-------RLAPPQ-SPPPPRP 934
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7791.16738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIS6_ECTSI1.300e-4482.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K430_9PHAE1.250e-4274.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7791contigL-elsbetiae_contig7791:204..1968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1002
Cds size1002
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7791.16738.1prot_L-elsbetiae_contig7791.16738.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7791 204..1968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816863.1908913-CDS-L-elsbetiae_contig7791:203..3691622816863.1908913-CDS-L-elsbetiae_contig7791:203..369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7791 204..369 +
1691683870.0616977-CDS-L-elsbetiae_contig7791:203..3691691683870.0616977-CDS-L-elsbetiae_contig7791:203..369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7791 204..369 +
1622816863.2045712-CDS-L-elsbetiae_contig7791:1083..15441622816863.2045712-CDS-L-elsbetiae_contig7791:1083..1544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7791 1084..1544 +
1691683870.0732605-CDS-L-elsbetiae_contig7791:1083..15441691683870.0732605-CDS-L-elsbetiae_contig7791:1083..1544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7791 1084..1544 +
1622816863.2175717-CDS-L-elsbetiae_contig7791:1593..19681622816863.2175717-CDS-L-elsbetiae_contig7791:1593..1968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7791 1594..1968 +
1691683870.0829394-CDS-L-elsbetiae_contig7791:1593..19681691683870.0829394-CDS-L-elsbetiae_contig7791:1593..1968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7791 1594..1968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7791.16738.1

>prot_L-elsbetiae_contig7791.16738.1 ID=prot_L-elsbetiae_contig7791.16738.1|Name=mRNA_L-elsbetiae_contig7791.16738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=334bp
GEPTPADQPLPEQRHADGLRVPHQVPPRQPLPLGRRLSPGRHTPSQEVLL
RPCGAGGEPPGPRAARLPRPRGREVRVHSPPGARGGPRCFRRGGDGEAHA
AQPRQPPPASRLLSRWRCRPRGHRCGGGRGGAQGVGLTAVRAGGTVGGGG
GGGSGSSFESSGHSSHFPAATTAAAAAPAAPAPAAAAASAAVPPAAAAAA
AAAAAAAVPQQQQQQQQQQQHQQQHHHQQQQQQQQPPAASPPAPRQEVPG
KLSASPSSSTTSTTSTGAIASRTTPSPTPAPTSSAASPSTGNHGNGTPLA
AEGRGGGGGGGAVRKAGNTPPLLPGFGGSASSSS
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mRNA from alignment at L-elsbetiae_contig7791:204..1968+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7791.16738.1 ID=mRNA_L-elsbetiae_contig7791.16738.1|Name=mRNA_L-elsbetiae_contig7791.16738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1765bp|location=Sequence derived from alignment at L-elsbetiae_contig7791:204..1968+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAGCCGACGCCAGCTGACCAACCTCTGCCAGAGCAGCGGCACGCCGA
CGGGCTTCGAGTGCCTCACCAGGTACCTCCTCGGCAACCGCTACCCCTCG
GGCGGCGGCTCTCACCGGGTCGACACACCCCGAGTCAGGAAGTGCTTCTC
CGCCCTTGCGGCGCAGGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTAGCC
GTGTGCTTGTGGTGGTAGGTATATAGGTTATCACGACCGCCTCTCCCTTC
ACCGTGGAAACATAAACCCCGTCTCTGAACGCAAAATTCTTGAAACTTGG
GACGGATTGTTCAGTGGACTTATATATGATCACCTACTACATTTATTTAC
CAGTAGGGTTGGGGTTAGGGTTAGGGTTAGGTTGTCACGGCTCTTTATTT
ATTTACTAGTGGGCCGGTCTGGCCGTTCGGTCTTTGTCCCCCTACCCCAA
GTTGGCTTGGGAGCGCGTGGTACATGATAGAGATACGTACAAGTATGTAT
GTACATACCCGGATTGTTTGTTGGCAGTCAACGTTGAAGCCATGTACACC
CTGCCCGCCGCCGCCGCCGTTAGATTGGCGACCCGGGTCTGACGCAGTGT
TTGGAGTCGCTCTCCGACGGGACGCAAGTCGCCATTGCCATCGCCATCGA
TCTCACCCTCCGACGGGACCCAAGTCGCCATTGCCATTGCCATCGATCTC
ACCAGAGCCCCCCCCCCCCCCCCCCTTTCGTGCCCCTTGCAGGGGGGGGG
CCCACCCGCCCGCCGGCCCCGCCCCCGCCCCCCCCCCCGCGGCGGGGGGC
GCGGNNNNNNNNNNCCCCTTCCCCTTCCCCCTGACCTCCCCCGCGCCCCC
CCCCCCCCCCTCTTTGGTTGCCGTTGCCAGGTGGGGAACCACCCGGACCG
CGGGCCGCTCGACTACCACGCCCTCGGGGTCGGGAGGTGCGTGTTCACTC
TCCGCCGGGAGCGCGTGGCGGCCCTCGCTGCTTCCGCCGCGGCGGCGACG
GCGAAGCTCACGCCGCCCAACCCCGCCAACCTCCCCCCGCGTCCCGCCTC
CTATCTCGCTGGCGGTGTCGCCCCCGAGGACATCGATGTGGGGGCGGCAG
GGGTGGGGCCCAGGGCGTCGGCCTCACTGCAGTACGGGCCGGCGGGACCG
TCGGTGGCGGCGGCGGCGGCGGTAGCGGCAGCAGCTTCGAAAGCAGCGGG
CACTCTTCCCACTTTCCCGCAGCAACAACAGCAGCTGCAGCAGCACCAGC
AGCACCAGCACCAGCTGCAGCAGCAGCATCAGCAGCAGTACCACCAGCAG
CAGCAGCAGCTGCAGCAGCAGCTGCAGCAGCAGCAGTACCAGCAGCAGCA
GCTGCTGCTGCAACAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACAGCAACAGCAGCAGCAACATCAGCAACAACATCATCATCAGCAG
CAGCAGCAGCAGCAGCAACCACCCGCGGCAAGTCCTCCCGCGCCTCGCCA
AGAAGTGCCCGGGAAGTTGAGTGCATCTCCGTCCTCCAGCACCACGAGCA
CCACAAGCACCGGCGCCATCGCCAGCAGGACCACCCCGTCTCCCACCCCC
GCGCCAACTTCGTCGGCGGCGTCCCCCTCCACGGGAAATCACGGCAATGG
GACGCCTCTGGCGGCGGAAGGCAGGGGCGGCGGCGGCGGCGGGGGGGCCG
TCCGCAAAGCCGGCAACACCCCCCCCCTGCTGCCTGGGTTTGGTGGCTCG
GCAAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7791:204..1968+

>mRNA_L-elsbetiae_contig7791.16738.1 ID=mRNA_L-elsbetiae_contig7791.16738.1|Name=mRNA_L-elsbetiae_contig7791.16738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2004bp|location=Sequence derived from alignment at L-elsbetiae_contig7791:204..1968+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAGCCGACGCCAGCTGACCAACCTCTGCCAGAGCAGCGGCACGCCGA
CGGGCTTCGAGTGCCTCACCAGGTACCTCCTCGGCAACCGCTACCCCTCG
GGCGGCGGCTCTCACCGGGTCGACACACCCCGAGTCAGGAAGTGCTTCTC
CGCCCTTGCGGCGCAGGGCGAGCCGACGCCAGCTGACCAACCTCTGCCAG
AGCAGCGGCACGCCGACGGGCTTCGAGTGCCTCACCAGGTACCTCCTCGG
CAACCGCTACCCCTCGGGCGGCGGCTCTCACCGGGTCGACACACCCCGAG
TCAGGAAGTGCTTCTCCGCCCTTGCGGCGCAGGTGGGGAACCACCCGGAC
CGCGGGCCGCTCGACTACCACGCCCTCGGGGTCGGGAGGTGCGTGTTCAC
TCTCCGCCGGGAGCGCGTGGCGGCCCTCGCTGCTTCCGCCGCGGCGGCGA
CGGCGAAGCTCACGCCGCCCAACCCCGCCAACCTCCCCCCGCGTCCCGCC
TCCTATCTCGCTGGCGGTGTCGCCCCCGAGGACATCGATGTGGGGGCGGC
AGGGGTGGGGCCCAGGGCGTCGGCCTCACTGCAGTACGGGCCGGCGGGAC
CGTCGGTGGCGGCGGCGGCGGCGGTAGCGGCAGCAGCTTCGAAAGCAGCG
GGCACTCTTCCCACTTTCCCGCAGCAACAACAGCAGCTGCAGCAGCACCA
GCAGCACCAGCACCAGCTGCAGCAGCAGCATCAGCAGCAGTACCACCAGC
AGCAGCAGCAGCTGCAGCAGCAGCTGCAGCAGCAGCAGTACCAGTGGGGA
ACCACCCGGACCGCGGGCCGCTCGACTACCACGCCCTCGGGGTCGGGAGG
TGCGTGTTCACTCTCCGCCGGGAGCGCGTGGCGGCCCTCGCTGCTTCCGC
CGCGGCGGCGACGGCGAAGCTCACGCCGCCCAACCCCGCCAACCTCCCCC
CGCGTCCCGCCTCCTATCTCGCTGGCGGTGTCGCCCCCGAGGACATCGAT
GTGGGGGCGGCAGGGGTGGGGCCCAGGGCGTCGGCCTCACTGCAGTACGG
GCCGGCGGGACCGTCGGTGGCGGCGGCGGCGGCGGTAGCGGCAGCAGCTT
CGAAAGCAGCGGGCACTCTTCCCACTTTCCCGCAGCAACAACAGCAGCTG
CAGCAGCACCAGCAGCACCAGCACCAGCTGCAGCAGCAGCATCAGCAGCA
GTACCACCAGCAGCAGCAGCAGCTGCAGCAGCAGCTGCAGCAGCAGCAGT
ACCACAGCAGCAGCAGCAACAGCAACAGCAGCAGCAACATCAGCAACAAC
ATCATCATCAGCAGCAGCAGCAGCAGCAGCAACCACCCGCGGCAAGTCCT
CCCGCGCCTCGCCAAGAAGTGCCCGGGAAGTTGAGTGCATCTCCGTCCTC
CAGCACCACGAGCACCACAAGCACCGGCGCCATCGCCAGCAGGACCACCC
CGTCTCCCACCCCCGCGCCAACTTCGTCGGCGGCGTCCCCCTCCACGGGA
AATCACGGCAATGGGACGCCTCTGGCGGCGGAAGGCAGGGGCGGCGGCGG
CGGCGGGGGGGCCGTCCGCAAAGCCGGCAACACCCCCCCCCTGCTGCCTG
GGTTTGGTGGCTCGGCAAGCAGCAGCAGCCAGCAGCAGCAGCAACAGCAA
CAGCAGCAGCAACATCAGCAACAACATCATCATCAGCAGCAGCAGCAGCA
GCAGCAACCACCCGCGGCAAGTCCTCCCGCGCCTCGCCAAGAAGTGCCCG
GGAAGTTGAGTGCATCTCCGTCCTCCAGCACCACGAGCACCACAAGCACC
GGCGCCATCGCCAGCAGGACCACCCCGTCTCCCACCCCCGCGCCAACTTC
GTCGGCGGCGTCCCCCTCCACGGGAAATCACGGCAATGGGACGCCTCTGG
CGGCGGAAGGCAGGGGCGGCGGCGGCGGCGGGGGGGCCGTCCGCAAAGCC
GGCAACACCCCCCCCCTGCTGCCTGGGTTTGGTGGCTCGGCAAGCAGCAG
CAGC
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