mRNA_L-elsbetiae_contig7787.16734.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7787.16734.1
Unique NamemRNA_L-elsbetiae_contig7787.16734.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7787.16734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7787contigL-elsbetiae_contig7787:3851..5737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size253
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7787.16734.1prot_L-elsbetiae_contig7787.16734.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7787 3851..5736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816862.7984138-CDS-L-elsbetiae_contig7787:3850..38951622816862.7984138-CDS-L-elsbetiae_contig7787:3850..3895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7787 3851..3895 +
1691683869.7834384-CDS-L-elsbetiae_contig7787:3850..38951691683869.7834384-CDS-L-elsbetiae_contig7787:3850..3895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7787 3851..3895 +
1622816862.8098543-CDS-L-elsbetiae_contig7787:5095..51651622816862.8098543-CDS-L-elsbetiae_contig7787:5095..5165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7787 5096..5165 +
1691683869.793161-CDS-L-elsbetiae_contig7787:5095..51651691683869.793161-CDS-L-elsbetiae_contig7787:5095..5165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7787 5096..5165 +
1622816862.8228734-CDS-L-elsbetiae_contig7787:5599..57361622816862.8228734-CDS-L-elsbetiae_contig7787:5599..5736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7787 5600..5736 +
1691683869.804672-CDS-L-elsbetiae_contig7787:5599..57361691683869.804672-CDS-L-elsbetiae_contig7787:5599..5736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7787 5600..5736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7787.16734.1

>prot_L-elsbetiae_contig7787.16734.1 ID=prot_L-elsbetiae_contig7787.16734.1|Name=mRNA_L-elsbetiae_contig7787.16734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
QVYQGTWKNGKRHGTGTLTYKNGSNYSGSWENDVKEGQGTFHYENGDVYS
GLWKAGMADGGGTQKFGNGDRYEGEWKEGRMNGQ
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mRNA from alignment at L-elsbetiae_contig7787:3851..5737+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7787.16734.1 ID=mRNA_L-elsbetiae_contig7787.16734.1|Name=mRNA_L-elsbetiae_contig7787.16734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1887bp|location=Sequence derived from alignment at L-elsbetiae_contig7787:3851..5737+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTTACCAAGGAACGTGGAAGAATGGAAAGCGTCACGGTACGGTAAG
GCAGGTTGCTTACCAATGGACGCGCTGATCACGTGCACAAAACCTGTACT
TCTACATACCTCTCTAGCAGCTCTTCGGAAGTACCAGTCGGGAATCGTAC
AGGGATGCCGCCACAGTCGGCCACACTCATTCGTTGGAACGGGGTGCAGT
GCATGAAGCTCTCACGGACCGTTCACTTCTTCTCTGTTGTTTTTAGCTCA
ACCCGAGTCCTCTAGCTAGACTATACAATATTTCGACCATTCTTGTTTTT
TGGCGTTACGTTTTTGGGTTGATGTTTTTCGGCTGTAGTACGTTCGCCAC
GCCGTACAGAGCAGTTTAATGGGTTCCCAGGCATTCCGCTGCTCGCTTTT
CATTGTCATCACCCCTGGAGGACAAACCCGACCTTCGATGTAGATATCCA
TACCGATTGGGGATGAACCAAGACGCCACATACATACATACTTGTACCTG
TACCTGGTATTTGCTTGATTAGTGTTCATGGACTAAATATATAAGATCAG
TGCGTGGGGTACACACCACACCACCGTAGGAAGCGAACTTTACGCTGCCA
GCCGGAGAGATTCACTCTCTATATGGAATATTGAGGTCTTCATATCGTAA
TCTGCGATGACAGACATGTGGTATAGCCGCGATAGGAGCACACGTACTAG
ATATACACACCAGATACATATGTGCGCTTTGTTTTCCAAAAAAAGGCCAT
TGGCCTGCATGAATGAGCGTTGTCATTTCCATACCATACATATCTATATG
GCGAGTTGGCGTGGGTTCCGCCTACCCCTGGTGCATTCATTGGCGGCCTT
GAATCACCCTCGTGAGACATACAATACAACCGTCAAACGCGAGACGTTGG
TCAAGAAGGGGCACCAATGCACGTATTCCCGAATATGTCCTTGTCTTGCG
TTGATACTGTATCTCTTGAAAATTAGAAAAGCATCGCACATATTGAATGC
TTCGTCTCAAAAGCCCCAACCTTCCGAAGTTGGTAGCGGGGCTTCGACTC
ACACCACTGCGTTTGGCATCCATGTGGATAGGTTAGGAACGCCAGCATCG
CGCACACAAAAAGAGTGAAATCAGTATGGATCCGTCTCTATCTCAAGAAA
TACGGCTCGCTCCTCACAATATAGGACTAGTTTACATGATAAACGTTAGG
CGCGCATCTGTATCGATCCACGCCGTCTCCGGCTTTGATGGAAAGGGTAC
GCTGACTTACAAGAATGGTTCGAACTACAGCGGATCCTGGGAGAATGACG
TGAAGGAAGGCCAAGGCAAGTAAATGGTAGAGATATTCCGCCCAGCATCT
TAAAATGACCACGCACAAAAAGTTGAGGTACCGTACGGAGTGAATATATG
ATCCGCGCATTTTGCCATTAATGCTTTGTAGTGTTATACCGCAGTAAAAG
TTGACCTTGAGTAATGCGGCGCGAGAAACAACCTCGGCCTGTTGCGAGTG
AAATAATTTCGGCGAGTTTGTCGGAGAGAACAGGGTCTTGAACGAATGAG
CCTTTATTTCCCAGGACTTTCTGTTTTTTGCCGAATGGGTGGCACAGCGT
TACAAACCTCAGACCTATGAAGACGAGATTGTCCTCTAGCTAGCCGAGGG
CATTACATGCAGGTGATAGCGTTGAGTGTGCGGCGACGTGTCCATTGTTT
CAGTTGAAACCCAATGTCCTTGATCACACGCAACGGGGTCGTTTTCCAGG
CACATTTCACTACGAAAATGGAGACGTCTACTCCGGCTTATGGAAGGCCG
GTATGGCTGACGGTGGCGGTACGCAGAAGTTCGGAAACGGGGATCGCTAT
GAAGGAGAGTGGAAAGAAGGCAGAATGAACGGGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7787:3851..5737+

>mRNA_L-elsbetiae_contig7787.16734.1 ID=mRNA_L-elsbetiae_contig7787.16734.1|Name=mRNA_L-elsbetiae_contig7787.16734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig7787:3851..5737+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTTACCAAGGAACGTGGAAGAATGGAAAGCGTCACGGTACGCAGGT
TTACCAAGGAACGTGGAAGAATGGAAAGCGTCACGGTACGGGTACGCTGA
CTTACAAGAATGGTTCGAACTACAGCGGATCCTGGGAGAATGACGTGAAG
GAAGGCCAAGGGTACGCTGACTTACAAGAATGGTTCGAACTACAGCGGAT
CCTGGGAGAATGACGTGAAGGAAGGCCAAGGCACATTTCACTACGAAAAT
GGAGACGTCTACTCCGGCTTATGGAAGGCCGGTATGGCTGACGGTGGCGG
TACGCAGAAGTTCGGAAACGGGGATCGCTATGAAGGAGAGTGGAAAGAAG
GCAGAATGAACGGGCAGGCACATTTCACTACGAAAATGGAGACGTCTACT
CCGGCTTATGGAAGGCCGGTATGGCTGACGGTGGCGGTACGCAGAAGTTC
GGAAACGGGGATCGCTATGAAGGAGAGTGGAAAGAAGGCAGAATGAACGG
GCAG
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