mRNA_L-elsbetiae_contig7781.16731.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7781.16731.1
Unique NamemRNA_L-elsbetiae_contig7781.16731.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7781.16731.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.890e-27
Identity = 60/80 (75.00%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 VTFDVSASGSGSLDLFEAMSLANPGDTVSLGDGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLIKHSFITLK 240
            VT+D SA G G  DL+EAM LA  GDTV+L DGTYD+A+VS RDG+ GSPITV GGPGAIIKG YSSRSVLI HSFITLK
Sbjct:   40 VTYDASADGDG-FDLYEAMDLAQAGDTVNLQDGTYDSALVSVRDGEFGSPITVSGGPGAIIKGSYSSRSVLITHSFITLK 118
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BLAST of mRNA_L-elsbetiae_contig7781.16731.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.640e-27
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 VTFDVSASGSGSLDLFEAMSLANPGDTVSLGDGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLIKHSFITLK 240
            VTFD SA G G  DL+EAM LA  GDTV+L DGTYD+A+VS R G+ GSPITV GGPGAIIKG YSSRSVLI HSFITLK
Sbjct:   40 VTFDASADGDG-FDLYEAMDLAQAGDTVNLQDGTYDSALVSVRGGEFGSPITVSGGPGAIIKGSYSSRSVLITHSFITLK 118
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BLAST of mRNA_L-elsbetiae_contig7781.16731.1 vs. uniprot
Match: A0A6H5JU99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU99_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.530e-26
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    1 VTFDVSASGSGSLDLFEAMSLANPGDTVSLGDGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLIKHSFITLKV 243
            VT++VSA G G  DL+EAM LA  GDTV+L +GTYD+A+VS RDG+ GSPITV GGPGAIIKG  SSRSVLI HSFITLK+
Sbjct:  138 VTYNVSADGDG-FDLYEAMDLAQAGDTVNLQNGTYDSALVSVRDGEFGSPITVTGGPGAIIKGSSSSRSVLIAHSFITLKM 217
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BLAST of mRNA_L-elsbetiae_contig7781.16731.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 9.020e-26
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 VTFDVSASGSGSLDLFEAMSLANPGDTVSLGDGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSSRSVLIKHSFITLK 240
            VT++VSA G G +DL+EAM LA  GDTV+L +GTYD+A+VS RDG+ GSPITV GGPGAIIKG  SSRSV I HSFITLK
Sbjct:   40 VTYNVSADGDG-IDLYEAMDLAEAGDTVNLQNGTYDSALVSIRDGEFGSPITVAGGPGAIIKGSSSSRSVFITHSFITLK 118
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BLAST of mRNA_L-elsbetiae_contig7781.16731.1 vs. uniprot
Match: D7G9J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J4_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 6.280e-19
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 VTFDVSASGSGSLDLFEAMSLANPGDTVSLGDGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYSS-RSVLIKHSFITLKV 243
            +T+DV+  G G   L EAM LA   DTV+L DGTY+ A+ + RDG+ G+PITVVGGPGAIIK   S+  SV + HSFI LKV
Sbjct:    1 MTYDVAVDGDG-FGLAEAMDLAEAEDTVNLQDGTYEQALENVRDGESGNPITVVGGPGAIIKAQNSAGHSVFVGHSFIELKV 81
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BLAST of mRNA_L-elsbetiae_contig7781.16731.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.330e-18
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 VTFDVSASGSGSLDLFEAMSLANPGDTVSLGDGTYDAAVVSHRDGKKGSPITVVGGPGAIIKGDYS-SRSVLIKHSFITLK 240
            +T+DV+  G G   L EAM LA  GDTVSL DGTY+ A+ + RDG+ G+PITVVGGPGAIIK   S SRSV + HSFI LK
Sbjct:    1 MTYDVTVDGDG-FGLAEAMDLAEAGDTVSLQDGTYEQALETVRDGESGNPITVVGGPGAIIKAQNSASRSVFVGHSFIELK 80
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BLAST of mRNA_L-elsbetiae_contig7781.16731.1 vs. uniprot
Match: D7FZD3_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD3_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 6.330e-13
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 VTFDVSASGSGSLDLFEAMSLANPGDTVSLGDGTYDAAVVSHRDGKKGSPITVVGGPGAIIKG 189
            VT++VSA G G +DL+EAM LA  GDTV+L +GTYD+A+VS RDG+ GSPITV GG G   +G
Sbjct:   40 VTYNVSADGDG-IDLYEAMDLAEAGDTVNLQNGTYDSALVSVRDGEFGSPITVAGGAGGHHQG 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7781.16731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FXR8_ECTSI2.890e-2775.00FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5LEX7_9PHAE5.640e-2775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU99_9PHAE2.530e-2671.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXR9_ECTSI9.020e-2671.25FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7G9J4_ECTSI6.280e-1957.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZD2_ECTSI1.330e-1861.73FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FZD3_ECTSI6.330e-1361.90FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7781contigL-elsbetiae_contig7781:7251..7493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPectin lyase fold
Ec32 orthologEc-00_011490.1
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816862.6092453-CDS-L-elsbetiae_contig7781:7250..74931622816862.6092453-CDS-L-elsbetiae_contig7781:7250..7493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7781 7251..7493 -
1691683869.6526074-CDS-L-elsbetiae_contig7781:7250..74931691683869.6526074-CDS-L-elsbetiae_contig7781:7250..7493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7781 7251..7493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7781.16731.1prot_L-elsbetiae_contig7781.16731.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7781 7251..7493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7781.16731.1

>prot_L-elsbetiae_contig7781.16731.1 ID=prot_L-elsbetiae_contig7781.16731.1|Name=mRNA_L-elsbetiae_contig7781.16731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
VTFDVSASGSGSLDLFEAMSLANPGDTVSLGDGTYDAAVVSHRDGKKGSP
ITVVGGPGAIIKGDYSSRSVLIKHSFITLKV
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mRNA from alignment at L-elsbetiae_contig7781:7251..7493-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7781.16731.1 ID=mRNA_L-elsbetiae_contig7781.16731.1|Name=mRNA_L-elsbetiae_contig7781.16731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=243bp|location=Sequence derived from alignment at L-elsbetiae_contig7781:7251..7493- (Laminarionema elsbetiae ELsaHSoW15)
GTGACCTTTGACGTGTCTGCGTCTGGTAGCGGCAGCCTCGATCTTTTCGA
GGCCATGAGCCTCGCAAATCCGGGGGACACCGTCTCCCTCGGCGACGGCA
CGTACGATGCCGCGGTCGTGTCCCACAGGGACGGCAAAAAGGGCAGCCCG
ATCACCGTGGTCGGTGGCCCTGGTGCGATCATCAAGGGCGACTACAGCAG
CCGCTCTGTGCTCATCAAGCACAGCTTCATAACTCTCAAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7781:7251..7493-

>mRNA_L-elsbetiae_contig7781.16731.1 ID=mRNA_L-elsbetiae_contig7781.16731.1|Name=mRNA_L-elsbetiae_contig7781.16731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig7781:7251..7493- (Laminarionema elsbetiae ELsaHSoW15)
GTGACCTTTGACGTGTCTGCGTCTGGTAGCGGCAGCCTCGATCTTTTCGA
GGCCATGAGCCTCGCAAATCCGGGGGACACCGTCTCCCTCGGCGACGGCA
CGTACGATGCCGCGGTCGTGTCCCACAGGGACGGCAAAAAGGGCAGCCCG
ATCACCGTGGTCGGTGGCCCTGGTGCGATCATCAAGGGCGACTACAGCAG
CCGCTCTGTGCTCATCAAGCACAGCTTCATAACTCTCAAGGTGGTGACCT
TTGACGTGTCTGCGTCTGGTAGCGGCAGCCTCGATCTTTTCGAGGCCATG
AGCCTCGCAAATCCGGGGGACACCGTCTCCCTCGGCGACGGCACGTACGA
TGCCGCGGTCGTGTCCCACAGGGACGGCAAAAAGGGCAGCCCGATCACCG
TGGTCGGTGGCCCTGGTGCGATCATCAAGGGCGACTACAGCAGCCGCTCT
GTGCTCATCAAGCACAGCTTCATAACTCTCAAGGTG
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