mRNA_L-elsbetiae_contig7780.16730.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig7780.16730.1
Unique Name	mRNA_L-elsbetiae_contig7780.16730.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig7780.16730.1 vs. uniprot
Match: D8LD96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD96_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.980e-46
Identity = 84/115 (73.04%), Postives = 98/115 (85.22%), Query Frame = 1

Query:   64 SNFPPGLLNPG---PLTTASPSFCARFLRVECTSGREFVFNLFFSSYGVWLLLPLSMLLLLVYRLVGPPEVDEREEELRQQWDDHRQRFKSGAKRSSLRGVIKSSYLTELSENGG 399
            +NFPPGLLNPG   P + A+  +C R L VEC +GR  +FN+FF+ YGVW+LLPLS++LLLVYRLVGPPEVDEREE LRQQW +HRQRFKSGAKRS+LRGVIKSSYLTELS+ GG
Sbjct:    2 NNFPPGLLNPGVSTPASVAAAGWCVRVLGVECPTGRVLIFNVFFTGYGVWMLLPLSIILLLVYRLVGPPEVDEREELLRQQWVEHRQRFKSGAKRSTLRGVIKSSYLTELSDRGG 116

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BLAST of mRNA_L-elsbetiae_contig7780.16730.1 vs. uniprot
Match: A0A6H5JP60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP60_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.490e-22
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 1

Query:   64 SNFPPGLLNPGPLTTASPS---FCARFLRVECTSGREFVFNLFFSSYGVWLLLPLSMLLLLVYRLVGPPEV 267
            ++FPPGLLNPG  T+AS +   +C R L VEC +GRE +FN+FF+ YGVW+L PLS++LLLVYRLVGPPEV
Sbjct:    2 NSFPPGLLNPGVSTSASVATAGWCVRLLGVECPTGRELIFNVFFTGYGVWMLFPLSIILLLVYRLVGPPEV 72

[Close]

BLAST of mRNA_L-elsbetiae_contig7780.16730.1 vs. uniprot
Match: A0A6H5JJV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.200e-16
Identity = 73/153 (47.71%), Postives = 76/153 (49.67%), Query Frame = 1

Query:  268 DEREEELRQQWDDHRQRFKSGAKRSSLRGVIKSSYLTELSENGGRRPRGRGGSGVXXXXXXXXXXXXXXXXXXXXXXXXXAGSSRSSAPHARRVSRHGEAGDTYD-DDDDSWEDVRVSPKDIPAAAAVAAAPRLPPPRETVHVLTTPGPTRVT 723
            DEREE LRQQW +HRQRFKSGAKRS+LRGVIKSSYLTELS+ GG       G  V                           SS S   H           D  D DDD SWEDVRV      AA            RETV VLTTPGPTRVT
Sbjct:   13 DEREELLRQQWVEHRQRFKSGAKRSTLRGVIKSSYLTELSDRGGGXXXX--GDAVSAPGLRE--------------------SSSSLVSHV--------IPDVDDIDDDSSWEDVRV------AATXXXXXXXXXXXRETVCVLTTPGPTRVT 129

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7780.16730.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7780.16730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LD96_ECTSI	4.980e-46	73.04	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JP60_9PHAE	3.490e-22	64.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJV4_9PHAE	4.200e-16	47.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7780	contig	L-elsbetiae_contig7780:920..2550 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	171.8
Seed ortholog evalue	3.9e-40
Seed eggNOG ortholog	2880.D8LD96
Preferred name	NDRG4
KEGG ko	ko:K18266
Hectar predicted targeting category	signal anchor
GOs	GO:0000003,GO:0001558,GO:0001655,GO:0001666,GO:0001775,GO:0001817,GO:0001818,GO:0001822,GO:0001932,GO:0001933,GO:0001934,GO:0001947,GO:0002009,GO:0002274,GO:0002376,GO:0003007,GO:0003008,GO:0003143,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005768,GO:0005783,GO:0005789,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005886,GO:0005911,GO:0005912,GO:0005913,GO:0006810,GO:0006928,GO:0006950,GO:0006974,GO:0007009,GO:0007154,GO:0007165,GO:0007272,GO:0007275,GO:0007276,GO:0007283,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007422,GO:0007507,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008017,GO:0008092,GO:0008150,GO:0008283,GO:0008285,GO:0008306,GO:0008366,GO:0008542,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010001,GO:0010008,GO:0010035,GO:0010038,GO:0010256,GO:0010562,GO:0010563,GO:0010574,GO:0010604,GO:0010605,GO:0010640,GO:0010642,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0012505,GO:0014037,GO:0014044,GO:0014706,GO:0014855,GO:0014910,GO:0014912,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016323,GO:0016477,GO:0017016,GO:0017137,GO:0019220,GO:0019222,GO:0019899,GO:0019953,GO:0021782,GO:0022008,GO:0022011,GO:0022406,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030054,GO:0030154,GO:0030308,GO:0030330,GO:0030334,GO:0030336,GO:0030424,GO:0030426,GO:0030427,GO:0031090,GO:0031253,GO:0031267,GO:0031323,GO:0031324,GO:0031325,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032269,GO:0032270,GO:0032287,GO:0032292,GO:0032386,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0033002,GO:0033267,GO:0033554,GO:0035050,GO:0035239,GO:0035265,GO:0035295,GO:0035556,GO:0036293,GO:0036294,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040013,GO:0042063,GO:0042127,GO:0042175,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042552,GO:0042770,GO:0042981,GO:0042995,GO:0043005,GO:0043015,GO:0043067,GO:0043209,GO:0043217,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043408,GO:0043409,GO:0043410,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0045296,GO:0045321,GO:0045576,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045926,GO:0045936,GO:0045937,GO:0046578,GO:0046579,GO:0048232,GO:0048278,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048598,GO:0048609,GO:0048660,GO:0048662,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048793,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050839,GO:0050877,GO:0050890,GO:0050896,GO:0051020,GO:0051049,GO:0051056,GO:0051057,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051270,GO:0051271,GO:0051640,GO:0051641,GO:0051674,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0055017,GO:0055037,GO:0055038,GO:0060038,GO:0060255,GO:0060284,GO:0060322,GO:0060341,GO:0060419,GO:0060429,GO:0060537,GO:0060562,GO:0060627,GO:0060973,GO:0061024,GO:0061371,GO:0065007,GO:0070161,GO:0070372,GO:0070373,GO:0070374,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071840,GO:0071944,GO:0072001,GO:0072331,GO:0072359,GO:0080090,GO:0090361,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098805,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120035,GO:0120038,GO:0140056,GO:0150034,GO:1902531,GO:1902532,GO:1902533,GO:2000026,GO:2000145,GO:2000146,GO:2001135
EggNOG free text desc.	nervous system development
EggNOG OGs	KOG2931@1,KOG2931@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04147
Ec32 ortholog description	Alpha/Beta hydrolase fold
Ec32 ortholog	Ec-25_002030.1
Exons	2
Model size	724
Cds size	723
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816862.5688016-CDS-L-elsbetiae_contig7780:919..1183	1622816862.5688016-CDS-L-elsbetiae_contig7780:919..1183	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7780 920..1183 +
1691683869.629573-CDS-L-elsbetiae_contig7780:919..1183	1691683869.629573-CDS-L-elsbetiae_contig7780:919..1183	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7780 920..1183 +
1622816862.579486-CDS-L-elsbetiae_contig7780:2090..2549	1622816862.579486-CDS-L-elsbetiae_contig7780:2090..2549	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7780 2091..2549 +
1691683869.6430414-CDS-L-elsbetiae_contig7780:2090..2549	1691683869.6430414-CDS-L-elsbetiae_contig7780:2090..2549	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7780 2091..2549 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7780.16730.1	prot_L-elsbetiae_contig7780.16730.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig7780 920..2549 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig7780:920..2550+
coding sequence from alignment at L-elsbetiae_contig7780:920..2550+

protein sequence of mRNA_L-elsbetiae_contig7780.16730.1

>prot_L-elsbetiae_contig7780.16730.1 ID=prot_L-elsbetiae_contig7780.16730.1|Name=mRNA_L-elsbetiae_contig7780.16730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
WCGLVGFIDEKGWAARALPMSSNFPPGLLNPGPLTTASPSFCARFLRVEC
TSGREFVFNLFFSSYGVWLLLPLSMLLLLVYRLVGPPEVDEREEELRQQW
DDHRQRFKSGAKRSSLRGVIKSSYLTELSENGGRRPRGRGGSGVVVAAAV
AAASSSSSDGGAGGEGGQRAGSSRSSAPHARRVSRHGEAGDTYDDDDDSW
EDVRVSPKDIPAAAAVAAAPRLPPPRETVHVLTTPGPTRVT

mRNA from alignment at L-elsbetiae_contig7780:920..2550+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig7780.16730.1 ID=mRNA_L-elsbetiae_contig7780.16730.1|Name=mRNA_L-elsbetiae_contig7780.16730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1631bp|location=Sequence derived from alignment at L-elsbetiae_contig7780:920..2550+ (Laminarionema elsbetiae ELsaHSoW15)
TGGTGTGGGCTCGTGGGATTCATAGACGAAAAGGGCTGGGCTGCACGCGC
GTTGCCAATGAGTTCTAATTTCCCGCCAGGACTGCTTAATCCCGGCCCGT
TGACGACGGCATCTCCGAGTTTCTGTGCGCGATTTCTCCGCGTGGAATGC
ACAAGCGGTCGCGAGTTTGTTTTCAACCTCTTCTTCTCCAGCTATGGGGT
CTGGCTGCTTCTCCCGTTGAGCATGCTTCTCCTGCTTGTATACAGGCTAG
TGGGGCCCCCTGAGGTGTGTCGTGGTGTTGTGCTGGCTCTCCCTTGGCTA
CTGCTGCTGCTGCTGCTGCTGCTGTAATATGTCGTCAAAACTACGGCTGC
CTGTCGCTCTCCTCGTGCCCCTCTGCCGATGCCGCTTGTCCCTGCTTTGT
ATCTCGATAAATATGTATTTCGTTGGTGTGGTGTACTTGGCGCAGAACCA
TTGGCGCAGCAGCAGTACACTGCTGTAGCAGGTACAGGTTTAAATGGTGT
ACATATCTTTATGTGTACATGTACCCCGACAAACCCGGAAATTCTCCGGG
GCCGGTACCTACGGTTGTACATCTTGTAGCTGGTACCAAGATAGACCAGC
ACAAGCAGGCCGGAGAACGTCTGTGCCTCACCTCGCTGTTTCTCCCATAG
ATGCGCAAGTCAAGCGCGATGCCGCCGTTAAACCAGACTGCCTCGCCGGT
TCTGGCGAGAGCGGACGACTCCGTGCGTGGGGAGATAGATCTCTTCGTAG
ATTACAAAAGTCTAGATAAGTAACGTCGCGTAGACGGACGGAGTAAGGAC
CGCGCAGTCAACATTCAAAAATGATAAAAAGCAAGCAGCGATCATCTGCC
AACCTCCGCGGTCCGCGCGAAAATAAACCCTGACCGCGCGAAGTTGAAGG
CGCTGGGCGCTGGCTTGGTCACTTCGAAGTACTATCTATGTATAACCCTT
ACTTCCATGTCACTAGATAGGGGTCCCTAAAAGCTTGAAACAGATACGGC
GTATCGTCGATAGCGTTGGCAAGTTGGCTGAAAACAAGCAACACGCTAAA
AAACGCGCGCGTTTGTATGCGTCATGCGTGTACATACATACACATAAACA
CGAAGTTGTAAATTACTTGCGCGCTACAATACATAGTCTAAAACAATACT
CCGTATAAACAAAACCTAAAGGTGGACGAGAGAGAAGAGGAGCTGCGGCA
GCAGTGGGACGACCACCGCCAGCGCTTCAAGTCGGGAGCCAAGCGGTCCT
CGCTGCGCGGCGTGATCAAGAGCTCCTACCTCACCGAGCTAAGCGAGAAC
GGTGGCCGCCGCCCGCGCGGCCGCGGTGGCAGCGGGGTCGTCGTCGCCGC
CGCCGTCGCCGCCGCTTCTTCTTCTTCTTCCGACGGCGGGGCTGGGGGCG
AGGGAGGGCAGCGCGCGGGTTCGTCTCGTTCTTCCGCGCCCCACGCGCGG
CGAGTTTCCCGGCACGGCGAAGCTGGCGACACCTACGACGATGACGACGA
CAGCTGGGAAGACGTGCGCGTTTCTCCTAAAGACATTCCTGCCGCCGCCG
CCGTCGCCGCCGCCCCCCGCCTCCCGCCGCCGAGAGAGACCGTGCACGTC
CTGACGACGCCGGGGCCGACGCGCGTCACCA

Coding sequence (CDS) from alignment at L-elsbetiae_contig7780:920..2550+

>mRNA_L-elsbetiae_contig7780.16730.1 ID=mRNA_L-elsbetiae_contig7780.16730.1|Name=mRNA_L-elsbetiae_contig7780.16730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig7780:920..2550+ (Laminarionema elsbetiae ELsaHSoW15)
TGGTGTGGGCTCGTGGGATTCATAGACGAAAAGGGCTGGGCTGCACGCGC
GTTGCCAATGAGTTCTAATTTCCCGCCAGGACTGCTTAATCCCGGCCCGT
TGACGACGGCATCTCCGAGTTTCTGTGCGCGATTTCTCCGCGTGGAATGC
ACAAGCGGTCGCGAGTTTGTTTTCAACCTCTTCTTCTCCAGCTATGGGGT
CTGGCTGCTTCTCCCGTTGAGCATGCTTCTCCTGCTTGTATACAGGCTAG
TGGGGCCCCCTGAGTGGTGTGGGCTCGTGGGATTCATAGACGAAAAGGGC
TGGGCTGCACGCGCGTTGCCAATGAGTTCTAATTTCCCGCCAGGACTGCT
TAATCCCGGCCCGTTGACGACGGCATCTCCGAGTTTCTGTGCGCGATTTC
TCCGCGTGGAATGCACAAGCGGTCGCGAGTTTGTTTTCAACCTCTTCTTC
TCCAGCTATGGGGTCTGGCTGCTTCTCCCGTTGAGCATGCTTCTCCTGCT
TGTATACAGGCTAGTGGGGCCCCCTGAGGTGGACGAGAGAGAAGAGGAGC
TGCGGCAGCAGTGGGACGACCACCGCCAGCGCTTCAAGTCGGGAGCCAAG
CGGTCCTCGCTGCGCGGCGTGATCAAGAGCTCCTACCTCACCGAGCTAAG
CGAGAACGGTGGCCGCCGCCCGCGCGGCCGCGGTGGCAGCGGGGTCGTCG
TCGCCGCCGCCGTCGCCGCCGCTTCTTCTTCTTCTTCCGACGGCGGGGCT
GGGGGCGAGGGAGGGCAGCGCGCGGGTTCGTCTCGTTCTTCCGCGCCCCA
CGCGCGGCGAGTTTCCCGGCACGGCGAAGCTGGCGACACCTACGACGATG
ACGACGACAGCTGGGAAGACGTGCGCGTTTCTCCTAAAGACATTCCTGCC
GCCGCCGCCGTCGCCGCCGCCCCCCGCCTCCCGCCGCCGAGAGAGACCGT
GCACGTCCTGACGACGCCGGGGCCGACGCGCGTCACCGTGGACGAGAGAG
AAGAGGAGCTGCGGCAGCAGTGGGACGACCACCGCCAGCGCTTCAAGTCG
GGAGCCAAGCGGTCCTCGCTGCGCGGCGTGATCAAGAGCTCCTACCTCAC
CGAGCTAAGCGAGAACGGTGGCCGCCGCCCGCGCGGCCGCGGTGGCAGCG
GGGTCGTCGTCGCCGCCGCCGTCGCCGCCGCTTCTTCTTCTTCTTCCGAC
GGCGGGGCTGGGGGCGAGGGAGGGCAGCGCGCGGGTTCGTCTCGTTCTTC
CGCGCCCCACGCGCGGCGAGTTTCCCGGCACGGCGAAGCTGGCGACACCT
ACGACGATGACGACGACAGCTGGGAAGACGTGCGCGTTTCTCCTAAAGAC
ATTCCTGCCGCCGCCGCCGTCGCCGCCGCCCCCCGCCTCCCGCCGCCGAG
AGAGACCGTGCACGTCCTGACGACGCCGGGGCCGACGCGCGTCACC