mRNA_L-elsbetiae_contig7780.16729.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7780.16729.1
Unique NamemRNA_L-elsbetiae_contig7780.16729.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7780.16729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7780contigL-elsbetiae_contig7780:265..785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size286
Cds size171
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7780.16729.1prot_L-elsbetiae_contig7780.16729.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7780 380..785 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816862.500714-UTR-L-elsbetiae_contig7780:264..3791622816862.500714-UTR-L-elsbetiae_contig7780:264..379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7780 265..379 -
1691683869.6000059-UTR-L-elsbetiae_contig7780:264..3791691683869.6000059-UTR-L-elsbetiae_contig7780:264..379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7780 265..379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816862.5145218-CDS-L-elsbetiae_contig7780:379..3911622816862.5145218-CDS-L-elsbetiae_contig7780:379..391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7780 380..391 -
1691683869.6097775-CDS-L-elsbetiae_contig7780:379..3911691683869.6097775-CDS-L-elsbetiae_contig7780:379..391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7780 380..391 -
1622816862.5283186-CDS-L-elsbetiae_contig7780:626..7851622816862.5283186-CDS-L-elsbetiae_contig7780:626..785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7780 627..785 -
1691683869.6188664-CDS-L-elsbetiae_contig7780:626..7851691683869.6188664-CDS-L-elsbetiae_contig7780:626..785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7780 627..785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7780.16729.1

>prot_L-elsbetiae_contig7780.16729.1 ID=prot_L-elsbetiae_contig7780.16729.1|Name=mRNA_L-elsbetiae_contig7780.16729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
ASRVFAQRHHYSPHKKLTCFVSQDSPGSRGIFDYLLILPEYSGKRRSIST
GNAEPI*
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mRNA from alignment at L-elsbetiae_contig7780:265..785-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7780.16729.1 ID=mRNA_L-elsbetiae_contig7780.16729.1|Name=mRNA_L-elsbetiae_contig7780.16729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=521bp|location=Sequence derived from alignment at L-elsbetiae_contig7780:265..785- (Laminarionema elsbetiae ELsaHSoW15)
GCCTCACGTGTTTTCGCGCAAAGACACCACTACTCCCCGCACAAGAAACT
CACTTGTTTCGTTTCACAAGACTCACCCGGCTCAAGGGGAATTTTTGATT
ATCTGCTTATCCTTCCAGAGTATTCGGGCAAGAGAAGGAGCATCAGCACC
GGTAACGCGGTGAGTAAATAAACTATACTCTCTGAACCTTGCCATCACGT
ATTTCTGTACAACATGCGCAATACAGCTGCAGGAATGGCGACAGGCCGCT
AGATAGATATTTAGATAGAACTGTACTTCTACGTAGAACGGTCGGTCGGT
CTCACTCAAGAGCGACGAGGGATAATACATAAGAGGTTGAACGACCGACA
CGCCGTTCTGAGCAGGAAATCAATTTGGCGAAAACGCATCACAGGAACCG
ATTTGAACGTGCGCCAAAGAGAGAGAGAGCGATGAAGGGGCAGGCCAAAG
GAGGTCCATAAACGCGCTCGACGAATACAGGCAACACCGGCAGCACAGCA
TGGGAGCGGGCTGGTCTTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7780:265..785-

>mRNA_L-elsbetiae_contig7780.16729.1 ID=mRNA_L-elsbetiae_contig7780.16729.1|Name=mRNA_L-elsbetiae_contig7780.16729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig7780:265..785- (Laminarionema elsbetiae ELsaHSoW15)
GCCTCACGTGTTTTCGCGCAAAGACACCACTACTCCCCGCACAAGAAACT
CACTTGTTTCGTTTCACAAGACTCACCCGGCTCAAGGGGAATTTTTGATT
ATCTGCTTATCCTTCCAGAGTATTCGGGCAAGAGAAGGAGCATCAGCACC
GGTAACGCGGCCTCACGTGTTTTCGCGCAAAGACACCACTACTCCCCGCA
CAAGAAACTCACTTGTTTCGTTTCACAAGACTCACCCGGCTCAAGGGGAA
TTTTTGATTATCTGCTTATCCTTCCAGAGTATTCGGGCAAGAGAAGGAGC
ATCAGCACCGGTAACGCGGAACCGATTTGAGAACCGATTTGA
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