mRNA_L-elsbetiae_contig7777.16724.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7777.16724.1
Unique NamemRNA_L-elsbetiae_contig7777.16724.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7777.16724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7777contigL-elsbetiae_contig7777:8952..9376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size427
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816862.0492046-CDS-L-elsbetiae_contig7777:8951..93741622816862.0492046-CDS-L-elsbetiae_contig7777:8951..9374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7777 8952..9374 +
1691683869.2613108-CDS-L-elsbetiae_contig7777:8951..93741691683869.2613108-CDS-L-elsbetiae_contig7777:8951..9374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7777 8952..9374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7777.16724.1prot_L-elsbetiae_contig7777.16724.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7777 8952..9374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7777.16724.1

>prot_L-elsbetiae_contig7777.16724.1 ID=prot_L-elsbetiae_contig7777.16724.1|Name=mRNA_L-elsbetiae_contig7777.16724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
GGGGGRPRVLLLSIYLSLSLSARGGGGGGGGPGTWGGGGRCCDSSTYCCI
SLWYCIPRESGCLHMYRDASGGCGVCFCFCDCPPMLVHTYTIPPVSKIKD
EEAGRLFFFYFIFFDAQLAARNILGVYVSVVACWVGSSRRE
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mRNA from alignment at L-elsbetiae_contig7777:8952..9376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7777.16724.1 ID=mRNA_L-elsbetiae_contig7777.16724.1|Name=mRNA_L-elsbetiae_contig7777.16724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=425bp|location=Sequence derived from alignment at L-elsbetiae_contig7777:8952..9376+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGGGGGGGGGGCGTCCACGGGTTCTGCTGCTCTCTATCTATCTCTC
TCTCTCTCTCTCTGCAAGAGGCGGCGGCGGCGGCGGCGGCGGGCCGGGCA
CTTGGGGGGGAGGCGGTCGTTGCTGTGATTCTTCTACATACTGCTGTATC
TCTCTCTGGTACTGTATTCCCCGGGAGTCTGGCTGCCTGCATATGTACCG
CGACGCAAGCGGGGGTTGCGGGGTATGTTTTTGTTTTTGCGACTGCCCCC
CTATGCTCGTGCATACATACACAATACCCCCGGTGTCGAAAATAAAAGAC
GAGGAAGCGGGGCGCCTCTTTTTTTTTTATTTTATTTTTTTTGATGCACA
GCTCGCAGCACGGAATATATTAGGAGTATATGTTTCAGTGGTCGCCTGCT
GGGTGGGGTCGTCGCGGAGAGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7777:8952..9376+

>mRNA_L-elsbetiae_contig7777.16724.1 ID=mRNA_L-elsbetiae_contig7777.16724.1|Name=mRNA_L-elsbetiae_contig7777.16724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig7777:8952..9376+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGGGGGGGGGGCGTCCACGGGTTCTGCTGCTCTCTATCTATCTCTC
TCTCTCTCTCTCTGCAAGAGGCGGCGGCGGCGGCGGCGGCGGGCCGGGCA
CTTGGGGGGGAGGCGGTCGTTGCTGTGATTCTTCTACATACTGCTGTATC
TCTCTCTGGTACTGTATTCCCCGGGAGTCTGGCTGCCTGCATATGTACCG
CGACGCAAGCGGGGGTTGCGGGGTATGTTTTTGTTTTTGCGACTGCCCCC
CTATGCTCGTGCATACATACACAATACCCCCGGTGTCGAAAATAAAAGAC
GAGGAAGCGGGGCGCCTCTTTTTTTTTTATTTTATTTTTTTTGATGCACA
GCTCGCAGCACGGAATATATTAGGAGTATATGTTTCAGTGGTCGCCTGCT
GGGTGGGGTCGTCGCGGAGAGAGGGGGGGGGGGGGGGGCGTCCACGGGTT
CTGCTGCTCTCTATCTATCTCTCTCTCTCTCTCTCTGCAAGAGGCGGCGG
CGGCGGCGGCGGCGGGCCGGGCACTTGGGGGGGAGGCGGTCGTTGCTGTG
ATTCTTCTACATACTGCTGTATCTCTCTCTGGTACTGTATTCCCCGGGAG
TCTGGCTGCCTGCATATGTACCGCGACGCAAGCGGGGGTTGCGGGGTATG
TTTTTGTTTTTGCGACTGCCCCCCTATGCTCGTGCATACATACACAATAC
CCCCGGTGTCGAAAATAAAAGACGAGGAAGCGGGGCGCCTCTTTTTTTTT
TATTTTATTTTTTTTGATGCACAGCTCGCAGCACGGAATATATTAGGAGT
ATATGTTTCAGTGGTCGCCTGCTGGGTGGGGTCGTCGCGGAGAGAG
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