mRNA_L-elsbetiae_contig7775.16722.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7775.16722.1
Unique NamemRNA_L-elsbetiae_contig7775.16722.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7775.16722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7775contigL-elsbetiae_contig7775:5690..6331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size414
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.943359-UTR-L-elsbetiae_contig7775:5689..59171622816861.943359-UTR-L-elsbetiae_contig7775:5689..5917Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7775 5690..5917 +
1691683869.196216-UTR-L-elsbetiae_contig7775:5689..59171691683869.196216-UTR-L-elsbetiae_contig7775:5689..5917Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7775 5690..5917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.9576108-CDS-L-elsbetiae_contig7775:5917..63311622816861.9576108-CDS-L-elsbetiae_contig7775:5917..6331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7775 5918..6331 +
1691683869.2078488-CDS-L-elsbetiae_contig7775:5917..63311691683869.2078488-CDS-L-elsbetiae_contig7775:5917..6331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7775 5918..6331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7775.16722.1prot_L-elsbetiae_contig7775.16722.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7775 5918..6331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7775.16722.1

>prot_L-elsbetiae_contig7775.16722.1 ID=prot_L-elsbetiae_contig7775.16722.1|Name=mRNA_L-elsbetiae_contig7775.16722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MANSFGPICNSAKAGMKQQEEHALEGKYSTKYVPGGAGLSHTSTIHVQQH
LYRARHLKKKKTHGPRMRQKRVHPSPLTPSLTFARKSCCFSFFRRSLLSP
VLISCFFALSKPSSRPKKCSKVDPTKESQPAFHSHIY*
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mRNA from alignment at L-elsbetiae_contig7775:5690..6331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7775.16722.1 ID=mRNA_L-elsbetiae_contig7775.16722.1|Name=mRNA_L-elsbetiae_contig7775.16722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig7775:5690..6331+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTGAAGAGAACAGACCAGGCATCCGATACCTGCATGCTGTTGTGCCC
GAGCGTTTTCAACGATTTGAAATGGTCAAGAAAGTACAACCAACCATATT
TTGAAGCCCCACTCCACGAGAACGAGCACACAAAAAAGAACTAAACCACA
CGGGTTATATATTAAAAATTCCACACGTGTCACCAGAGGGCCTCTCCATT
ATGTAGATACGATAACACCACACAATCGATGGCAAACTCTTTTGGGCCGA
TTTGCAATTCAGCGAAGGCCGGAATGAAGCAACAAGAGGAACACGCGCTG
GAAGGAAAATACTCTACGAAGTACGTACCCGGGGGGGCTGGTCTTTCCCA
CACAAGCACGATACATGTGCAGCAACACTTATATCGGGCTCGGCACCTGA
AAAAAAAAAAAACGCATGGCCCGAGGATGCGTCAAAAAAGGGTACACCCG
TCGCCGCTAACACCAAGCCTTACATTCGCGCGTAAAAGCTGCTGCTTCTC
CTTTTTTCGTCGCTCCCTCCTCTCTCCCGTGTTGATTTCTTGCTTCTTCG
CGCTTTCGAAGCCAAGCAGCAGGCCAAAAAAATGCAGCAAAGTAGACCCC
ACGAAGGAGAGCCAGCCAGCATTTCATTCCCACATTTATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7775:5690..6331+

>mRNA_L-elsbetiae_contig7775.16722.1 ID=mRNA_L-elsbetiae_contig7775.16722.1|Name=mRNA_L-elsbetiae_contig7775.16722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig7775:5690..6331+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAAACTCTTTTGGGCCGATTTGCAATTCAGCGAAGGCCGGAATGAA
GCAACAAGAGGAACACGCGCTGGAAGGAAAATACTCTACGAAGTACGTAC
CCGGGGGGGCTGGTCTTTCCCACACAAGCACGATACATGTGCAGCAACAC
TTATATCGGGCTCGGCACCTGAAAAAAAAAAAAACGCATGGCCCGAGGAT
GCGTCAAAAAAGGGTACACCCGTCGCCGCTAACACCAAGCCTTACATTCG
CGCGTAAAAGCTGCTGCTTCTCCTTTTTTCGTCGCTCCCTCCTCTCTCCC
GTGTTGATTTCTTGCTTCTTCGCGCTTTCGAAGCCAAGCAGCAGGCCAAA
AAAATGCAGCAAAGTAGACCCCACGAAGGAGAGCCAGCCAGCATTTCATT
CCCACATTTATTGAATGGCAAACTCTTTTGGGCCGATTTGCAATTCAGCG
AAGGCCGGAATGAAGCAACAAGAGGAACACGCGCTGGAAGGAAAATACTC
TACGAAGTACGTACCCGGGGGGGCTGGTCTTTCCCACACAAGCACGATAC
ATGTGCAGCAACACTTATATCGGGCTCGGCACCTGAAAAAAAAAAAAACG
CATGGCCCGAGGATGCGTCAAAAAAGGGTACACCCGTCGCCGCTAACACC
AAGCCTTACATTCGCGCGTAAAAGCTGCTGCTTCTCCTTTTTTCGTCGCT
CCCTCCTCTCTCCCGTGTTGATTTCTTGCTTCTTCGCGCTTTCGAAGCCA
AGCAGCAGGCCAAAAAAATGCAGCAAAGTAGACCCCACGAAGGAGAGCCA
GCCAGCATTTCATTCCCACATTTATTGA
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