mRNA_L-elsbetiae_contig7771.16718.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7771.16718.1
Unique NamemRNA_L-elsbetiae_contig7771.16718.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Match: A0A6H5LNE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE9_9PHAE)

HSP 1 Score: 394 bits (1013), Expect = 9.190e-127
Identity = 170/245 (69.39%), Postives = 199/245 (81.22%), Query Frame = 3 
Query:    3 HWFQDRIHQDIQDGNRPCRSGQRCPACLDIEHTLVIAMWRNPYDWVSGMQKLPWHAQAHAGVEDLSTFMTMPWTMEPDAEQRARKEASVKAKDLAPCMDNFLPWEVLPCDPQNRDSIYELDPDGQAYGNVYELRKAKIRDFSAIKLWAPYYEKILYEDMLEGDGLNDWLKSLDTIYGLSGKYGSVPDQRLAKNTATLRNHMYYLNSGHCTPHCRMGGAAGENALETLHRMWDDELEGGLGYHKVQ 737
            HWFQDRI+QDIQDG R CR GQ+CPAC DI HTLV+AMWRNPYDWVSGM K+PWHAQAHA + D+S FMTMPW M  + E++ARKEA ++ KD  PC+DNFLPWEVLPC P +  +IYELDP G+AYGN+YELRKAKIRDF A+K+WAPYYEKILYEDML  DGL  WL SLDT+YGL G Y SVPD  LA    + R  MYY+NS HC PHC+MGG AG +ALET++R+WD+ELE  LGYH+V+
Sbjct:  140 HWFQDRIYQDIQDGKRLCREGQQCPACKDINHTLVVAMWRNPYDWVSGMHKIPWHAQAHASIPDMSKFMTMPWIMGAEEEKQARKEALIRTKDELPCIDNFLPWEVLPCRPGDESAIYELDPGGEAYGNIYELRKAKIRDFDAVKMWAPYYEKILYEDMLAKDGLKMWLMSLDTLYGLGGNYKSVPDSALAVKMESSRKQMYYMNSQHCAPHCKMGGVAGRSALETMNRLWDEELEEDLGYHQVR 384
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BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Match: D8LAU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU0_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 4.010e-109
Identity = 153/244 (62.70%), Postives = 178/244 (72.95%), Query Frame = 3 
Query:    3 HWFQDRIHQDIQDGNRPCRSGQRCPACLDIEHTLVIAMWRNPYDWVSGMQKLPWHAQAHAGVEDLSTFMTMPWTMEPDAEQRARKEASVKAKDLAPCMDNFLPWEVLPCDPQNRDSIYELDPDGQAYGNVYELRKAKIRDFSAIKLWAPYYEKILYEDMLEGDGLNDWLKSLDTIYGLSGKYGSVPDQRLAKNTATLRNHMYYLNSGHCTPHCRMGGAAGENALETLHRMWDDELEGGLGYHKV 734
            HWFQDRIHQD+QDG RPCR  Q+CPACLD EHTLV+ MWRNPYDW+SGM   P HA+AH GV+DL  FMTMPW M P+                 PC+DNFLP EVLPC   +R SIYELD DG+AYGN+YELRKAKI DF+A++ W P+YEK++YEDML G GL DWL+SL+T YGL G Y  VPD  L  N A L  +MYY NS HC P+C MGG  G  A+E LH+MWD+ELE G+GYHKV
Sbjct:   82 HWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPEL----------------PCIDNFLPNEVLPCKENDRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWRNMYYTNSEHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYHKV 309
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BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Match: D8LAT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT9_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 1.880e-107
Identity = 151/244 (61.89%), Postives = 177/244 (72.54%), Query Frame = 3 
Query:    3 HWFQDRIHQDIQDGNRPCRSGQRCPACLDIEHTLVIAMWRNPYDWVSGMQKLPWHAQAHAGVEDLSTFMTMPWTMEPDAEQRARKEASVKAKDLAPCMDNFLPWEVLPCDPQNRDSIYELDPDGQAYGNVYELRKAKIRDFSAIKLWAPYYEKILYEDMLEGDGLNDWLKSLDTIYGLSGKYGSVPDQRLAKNTATLRNHMYYLNSGHCTPHCRMGGAAGENALETLHRMWDDELEGGLGYHKV 734
            HWFQDRIHQD+QDG RPCR  Q+CPACLD EHTLV+ MWRNPYDW+ GM   P HA+AH GV+DL  FMTMPW M P+                 PC+DNFLP EVLPC    R SIYELD DG+AYGN+YELRKAKI DF+A++ W P+YEK++YEDML G GL DWL+SL+T YGL G Y  VPD  L  N A L ++MYY NS HC P+C MGG  G  A+E LH+MWD+ELE G+GY+KV
Sbjct:   85 HWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPEL----------------PCIDNFLPNEVLPCKENGRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNSEHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYNKV 312
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BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Match: D7FTA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA1_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 8.430e-66
Identity = 109/206 (52.91%), Postives = 132/206 (64.08%), Query Frame = 3 
Query:    3 HWFQDRIHQDIQDGNRPCRSGQRCPACLDIEHTLVIAMWRNPYDWVSGMQKLPWHAQAHAGVEDLSTFMTMPWTMEPDAEQRARKEASVKAKDLAPCMDNFLPWEVLPCDPQNRDSIYELDPDGQAYGNVYELRKAKIRDFSAIKLWAPYYEKILYEDMLEGDGLNDWLKSLDTIYGLSGKYGSVPDQRLAKNTATLRNHMYYLNS 620
            HWFQDRIHQDIQDG RPCR  Q+CPACLD EHTLV+AMWRNPYDW+SGMQ  P HA+AH GV+DLS +MTMPW M+P  E+RARK+A +KAK+                                         +AKI DF+A++ W P+YEKI  EDML+G+ L DWL+SL+T YGL G Y  V D  L ++ A  R+HMYY NS
Sbjct:   66 HWFQDRIHQDIQDGKRPCREHQQCPACLDTEHTLVVAMWRNPYDWISGMQSNPHHAKAHRGVQDLSEYMTMPWIMQPKNEERARKDALIKAKE-----------------------------------------EAKILDFNAVETWVPFYEKIADEDMLDGETLGDWLRSLETKYGLVGNYIDVLDSALGESMAHSRSHMYYTNS 230
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BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Match: D8LB15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB15_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 9.190e-38
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = 3 
Query:    3 HWFQDRIHQDIQDGNRPCRSGQRCPACLDIEHTLVIAMWRNPYDWVSGMQKLPWHAQAHAGVEDLSTFMTMPWTMEPDAEQRARKEASVK 272
            HWFQDRI+QDI DG RPCR GQ+CPAC DI HTLV+AMWRNPYDW+SGM K+PWHAQAHA + D+S FMTMPW M  +     R    ++
Sbjct:   50 HWFQDRIYQDIHDGKRPCREGQQCPACKDINHTLVVAMWRNPYDWISGMHKIPWHAQAHASIPDMSKFMTMPWIMGAEVRDHRRARRHIR 139
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BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Match: A0A7S2V0J0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0J0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.780e-19
Identity = 57/152 (37.50%), Postives = 80/152 (52.63%), Query Frame = 3 
Query:  318 VLPCDPQNRDSIYELDPDGQAYGNVYELRKAKIRDFSAIKLWAPYYEKILYEDMLEGDG--LNDWLKSLDTIYGL--SGKYGSVPDQRLAKNTATLRNHMYYLNSGHCTPHCRMGGAAGE---------NALETLHRMWDDELEGGLGYHKV 734
            V+PCD  NR+ IYELD +G  Y ++Y LR AKI+DF AI+ WAP YE + +ED++EG    L  WLK L   YG+  + K+         K   ++++  Y    G C      G + GE          A  T++ + D ELE  LGY K+
Sbjct:    1 VIPCDRDNREMIYELDEEGVPYSSLYALRVAKIKDFMAIEDWAPNYELVRHEDIIEGGEVFLVKWLKYLSKTYGIPKNPKFSPKKAAEEHKMKKSMKSGFYLTKGGFCK-----GKSKGELCPYFVDEYKAWATVNELLDSELELKLGYAKL 147
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BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Match: A0A7S0G6T5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G6T5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.370e-16
Identity = 63/222 (28.38%), Postives = 102/222 (45.95%), Query Frame = 3 
Query:    3 HWFQDRIHQDIQDGNRPCRSGQRCPACLDIEHTLVIAMWRNPYDWVSGMQKLPWHAQAHAGVEDLSTFMTMPWTMEPDAEQRARKEASVKAKDLAPCMDNFLPWEVLPCDPQNRD------------SIYEL--DPDGQAYGNVYELRKAKIRDFSAIKLWAPYYEKI---LYEDMLEGDGLNDWLKSLDTIYGLSGKYGSVPDQRLAKNTATLRNHMYYLN 617
            HWFQD    D  +  R              + TLVIAM+RNPY+WV  M+K P H+ +H  ++    F+T PWTM      R   +          C + F   +V+ C  Q  +             IYE+  D  G+ + N+ E+R AKI +   ++ W P+   +    YED+LE DG  +++K+L+ + G++    + P Q   K     +  + Y++
Sbjct:   94 HWFQD---DDSNENER--------------QKTLVIAMFRNPYEWVMAMRKTPHHSPSHLRLK-WQNFVTKPWTM-----TRPESDLVFSNSTGQICHEKFAYKDVISCQRQPPELMSSTGGYSSGKPIYEMRHDGSGKPFANILEMRAAKIHNHLGVQEW-PWISGVHVVRYEDLLE-DGTGNFIKNLEKLTGVTASCKAEPPQPKRKKRKLSKEFVKYIS 290
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BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Match: A0A7S2E1N5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E1N5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.050e-14
Identity = 64/220 (29.09%), Postives = 97/220 (44.09%), Query Frame = 3 
Query:    3 HWFQDRIHQDIQDGNRPCRSGQRCPACLDIE----HTLVIAMWRNPYDWVSGMQKLPWHAQAHAGVEDLSTFMTMPWTMEPDAEQRARKEASVKAKDLAPCMDNFLPWEVLPC-----------DPQNRDS----IYEL--DPDGQAYGNVYELRKAKIRDFSAIK-------LWAPYYEKILYEDMLEGDGLNDWLKSLDTIYGLSGKYGSVPDQRLAK 578
            HWFQ    +D   G             LD E    ++LVI+M+RNPYDW + M ++P HA AH  +     F+T  WT E     R  K+ ++  K+   C D F   EV+ C           D + R S    +YE+  D  G+ Y N+ ++R  KIR+F  +K        W   YE +L       DG  ++L+ ++   G+  +  +   Q   K
Sbjct:   95 HWFQVDEERDDYKG-------------LDFETYPTNSLVISMFRNPYDWTTAMHRVPHHAPAHIDLP-WKEFLTKAWTTE-----RVGKDLNITDKENFLCQDKFKYHEVVSCIHKPMGDEYWKDKKTRFSEHQPVYEMKNDGSGEPYDNILDMRADKIRNFLTVKDFKRITDFWVYKYEDLL------ADGTEEFLQKIEKATGVKRQCKAAEPQNRRK 289
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BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Match: A0A7S2E405_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E405_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.220e-13
Identity = 64/220 (29.09%), Postives = 97/220 (44.09%), Query Frame = 3 
Query:    3 HWFQDRIHQDIQDGNRPCRSGQRCPACLDIE----HTLVIAMWRNPYDWVSGMQKLPWHAQAHAGVEDLSTFMTMPWTMEPDAEQRARKEASVKAKDLAPCMDNFLPWEVLPC-----------DPQNRDS----IYEL--DPDGQAYGNVYELRKAKIRDFSAIK-------LWAPYYEKILYEDMLEGDGLNDWLKSLDTIYGLSGKYGSVPDQRLAK 578
            HWFQ    +D   G             LD E    ++LVI+M+RNPYDW + M ++P HA AH  +     F+T  WT E     R  K+ ++  K+   C D F   EV+ C           D + R S    +YE+  D  G+ Y N+ ++R  KIR+F  +K        W   YE +L       DG  ++L+ ++   G+  +  +   Q   K
Sbjct:  271 HWFQVDEERDDYKG-------------LDFETYPTNSLVISMFRNPYDWTTAMHRVPHHAPAHIDLP-WKEFLTKAWTTE-----RVGKDLNITDKENFLCQDKFKYHEVVSCIHKPMGDEYWKDKKTRFSEHQPVYEMKNDGSGEPYDNILDMRADKIRNFLTVKDFKRITDFWVYKYEDLL------ADGTEEFLQKIEKATGVKRQCKAAEPQNRRK 465
[Close]
BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Match: K0RDY6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RDY6_THAOC)

HSP 1 Score: 80.5 bits (197), Expect = 1.230e-12
Identity = 60/206 (29.13%), Postives = 100/206 (48.54%), Query Frame = 3 
Query:  102 LVIAMWRNPYDWVSGMQKLPWHAQAHAGVEDLST------------FMTMPWTME---PDAEQRARKEASVKAKDLAPCMDNFLPWEVLPCDPQNR-------DSIYELDPDG--QAYGNVYELRKAKIRDF------SAIKLWAPY-YEKILYEDMLEGDGLNDWLKSLDTIYGLSGKYGSVPDQRLAKNTATLRNHMYYLNSGH 626
            +VIAM+R+PYDWV  M++ P HA  HA   DL              F++ PW       D +   R +A  +  ++  C+  +   EV+PC P++          +YEL  DG  +AYG++ +LR+ K+ +F      + ++ + P  YE ++    L+G G  D+LKSL+ + GL+ K        + K+       M ++N  H
Sbjct:   74 VVIAMFRDPYDWVEAMRERPHHAHDHADCTDLECPDCECRSMDWKDFVSKPWIGPRGPADKDLMVRAKAEGRKLEVEGCLAGYRFDEVIPCLPEDSVDKEGYSSYMYELMHDGSNRAYGSIIDLRREKLLNFLTVPRMNGVRAFFPQRYEGLV----LKGTG--DFLKSLEEVTGLTAKCTPFEGTGVVKHKNVEPEFMEWMNEYH 273
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7771.16718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LNE9_9PHAE9.190e-12769.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAU0_ECTSI4.010e-10962.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LAT9_ECTSI1.880e-10761.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTA1_ECTSI8.430e-6652.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB15_ECTSI9.190e-3865.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V0J0_9STRA9.780e-1937.50Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0G6T5_9STRA6.370e-1628.38Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2E1N5_9STRA5.050e-1429.09Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2E405_9STRA2.220e-1329.09Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K0RDY6_THAOC1.230e-1229.13Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7771contigL-elsbetiae_contig7771:1079..8210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue2.9e-71
Seed eggNOG ortholog2880.D8LAU0
Hectar predicted targeting categoryother localisation
EggNOG OGs2EKXM@1,2SQQN@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005620.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2518
Cds size627
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.5061662-UTR-L-elsbetiae_contig7771:1078..11911622816861.5061662-UTR-L-elsbetiae_contig7771:1078..1191Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7771 1079..1191 +
1691683868.8593743-UTR-L-elsbetiae_contig7771:1078..11911691683868.8593743-UTR-L-elsbetiae_contig7771:1078..1191Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7771 1079..1191 +
1622816861.5983438-UTR-L-elsbetiae_contig7771:6432..82101622816861.5983438-UTR-L-elsbetiae_contig7771:6432..8210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7771 6433..8210 +
1691683868.9577594-UTR-L-elsbetiae_contig7771:6432..82101691683868.9577594-UTR-L-elsbetiae_contig7771:6432..8210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7771 6433..8210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.51998-CDS-L-elsbetiae_contig7771:1191..12511622816861.51998-CDS-L-elsbetiae_contig7771:1191..1251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 1192..1251 +
1691683868.8776727-CDS-L-elsbetiae_contig7771:1191..12511691683868.8776727-CDS-L-elsbetiae_contig7771:1191..1251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 1192..1251 +
1622816861.5312374-CDS-L-elsbetiae_contig7771:1681..17441622816861.5312374-CDS-L-elsbetiae_contig7771:1681..1744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 1682..1744 +
1691683868.8898664-CDS-L-elsbetiae_contig7771:1681..17441691683868.8898664-CDS-L-elsbetiae_contig7771:1681..1744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 1682..1744 +
1622816861.5416765-CDS-L-elsbetiae_contig7771:3003..30511622816861.5416765-CDS-L-elsbetiae_contig7771:3003..3051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 3004..3051 +
1691683868.9000697-CDS-L-elsbetiae_contig7771:3003..30511691683868.9000697-CDS-L-elsbetiae_contig7771:3003..3051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 3004..3051 +
1622816861.5529835-CDS-L-elsbetiae_contig7771:3652..37751622816861.5529835-CDS-L-elsbetiae_contig7771:3652..3775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 3653..3775 +
1691683868.9100397-CDS-L-elsbetiae_contig7771:3652..37751691683868.9100397-CDS-L-elsbetiae_contig7771:3652..3775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 3653..3775 +
1622816861.5669806-CDS-L-elsbetiae_contig7771:4341..44601622816861.5669806-CDS-L-elsbetiae_contig7771:4341..4460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 4342..4460 +
1691683868.9221704-CDS-L-elsbetiae_contig7771:4341..44601691683868.9221704-CDS-L-elsbetiae_contig7771:4341..4460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 4342..4460 +
1622816861.5775945-CDS-L-elsbetiae_contig7771:5512..56051622816861.5775945-CDS-L-elsbetiae_contig7771:5512..5605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 5513..5605 +
1691683868.9319687-CDS-L-elsbetiae_contig7771:5512..56051691683868.9319687-CDS-L-elsbetiae_contig7771:5512..5605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 5513..5605 +
1622816861.5874023-CDS-L-elsbetiae_contig7771:6311..64321622816861.5874023-CDS-L-elsbetiae_contig7771:6311..6432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 6312..6432 +
1691683868.941151-CDS-L-elsbetiae_contig7771:6311..64321691683868.941151-CDS-L-elsbetiae_contig7771:6311..6432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7771 6312..6432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7771.16718.1prot_L-elsbetiae_contig7771.16718.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7771 1192..6432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7771.16718.1

>prot_L-elsbetiae_contig7771.16718.1 ID=prot_L-elsbetiae_contig7771.16718.1|Name=mRNA_L-elsbetiae_contig7771.16718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
MWRNPYDWVSGMQKLPWHAQAHAGVEDLSTFMTMPWTMEPDAEQRARKEA
SVKAKDLAPCMDNFLPWEVLPCDPQNRDSIYELDPDGQAYGNVYELRKAK
IRDFSAIKLWAPYYEKILYEDMLEGDGLNDWLKSLDTIYGLSGKYGSVPD
QRLAKNTATLRNHMYYLNSGHCTPHCRMGGAAGENALETLHRMWDDELEG
GLGYHKVQ*
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mRNA from alignment at L-elsbetiae_contig7771:1079..8210+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7771.16718.1 ID=mRNA_L-elsbetiae_contig7771.16718.1|Name=mRNA_L-elsbetiae_contig7771.16718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7132bp|location=Sequence derived from alignment at L-elsbetiae_contig7771:1079..8210+ (Laminarionema elsbetiae ELsaHSoW15)
AGCACTGGTTTCAAGACCGCATCCACCAGGACATCCAAGACGGCAATCGG
CCGTGCCGTAGCGGCCAGCGTTGCCCGGCCTGCCTCGACATCGAGCACAC
CCTGGTTATAGCCATGTGGCGGAACCCCTACGACTGGGTCAGCGGGATGC
AGAAGCTGCCGTGGCATGCCCAGGTACGTTGATGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGTTGTTGTTGCTCCTGTTG
CTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGCCGTTGTTGTTGTTTCTGT
CATATGTTGGTTGGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTGTTTGTT
GTTGTTGTCATTGCTTCTGTGCCGTAGTTTAGACCGCCTGCCTCCCCCCC
CTGCCCGCTTAATTCTTCTCAGGTGTGTTCCTTTCTCTCCCTCTCTGTGG
GTCTCTTTCGATGGTGGCGTTTTTCCTTTGCTTCTCTTTTCGTATCGCGT
TCCTGTTTGTCGTCGTCGTTGTGTTGGTGTCGATGTGGCATGTGGCCTGA
TAGGCGCATGCAGGCGTGGAGGACTTGAGCACCTTCATGACGATGCCGTG
GACAATGGAGCCCGACGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAGAGAGAACGAATGA
GAAAGAGGAGGAAAGGGAGGGCCGTATCGTGTGTGCCGACCATGCCGAAA
CCATACAAAACTTGCACTTCATACCTATTGGGTATTTACTGCTGTAAAGC
TTGCACTTCATAGCTAGACGCCTCGATGTACACATGTATGCGTGTTAGGT
ATTGTACTCGGTTCTTTCATTCTAGACCGTGGTAGGTAGCAGTCCGGGAA
TGGGTGGGTAGGCCTTCTTGAACGGTTTTAAATATTTAGCGAAACCCTTT
TCACCTTTTCACATCTGGGGCTCTTGTTGTTGTTGTTGTTATTGTTGTTG
TTGTTTTTGTTTCTTCACATTAAAAACCGTTCCGATCTCTCCACCCAGTA
CCTCCCTATGTCCGTAAAATCCAACACTTGATGCGGTCAATTCCCGTGGT
CGCAGGATAACTTTTACCTAACAAAAAAAGGTATACGAAAATAAAAATGG
ACCCGAGGGGTCAGCAAAGCGATAAAAATCAAAAGACAAACAGTGTGGAG
CCCCTCGCTCCCCTCTACACGCTATGCGAGGTAAAAGACAAAACTGAACA
AGCCAACATCACCAACCAGGGGTATACACTCCGTTGTTCTATCTTAGTAC
CCTAACAATGCCAGGGTGTTCCGTGCCGGGTTCTCGCCGGTCAGGNNNNN
NNNNNCCCTTTCCACACTACTGCAGGGATAAACAAAAACACCAAAACCTA
CCCCCCCCCCCCCCTCCCCCCATCTACTAATGTCCCCCCCCCCCCCCCCC
CCCCACCCCGCGTGCGCGTAAATTAGGAGTTTTGTTGGCTGCGCTGAATC
GAATACTGGGCTCGGGGAGATTATTTTCACGGGGTTTTCTCCATCCCGAT
TGGCCGATTCGGCTTGTCGATGGTGGTGGTGGTGGGGTTATGGATCCTGA
TTGTACGCAAATGCTTTGCTCGGCCGACGTACATCGTCCTGTCTCTTGGC
AACGGCGAGACCGCGTCGTTTCTTAATTAATGTATACAAATGTCAGCAGT
CTACGTCCAGTCTGGGAAGGAGTCGTTCCAGCGGGACTGTTGTAGGCATA
CTAACCCCCTGCTTCCCCATCCAAGATATGCTCGCACAAAAATCCAGTCC
CTCTGGAACGTTTTTTATTTAAATTTGTGGATTTGTAACACAAAAGCTTT
TTTTATTTTCTGTTTTTCCTCGCAGGCCGAGCAGCGTGCGAGAAAAGAAG
CGTCGGTAAAGGCCAAAGACTTGGTGAGAGACCCGTCACAAACTGATGCC
GGTGTTGACCTACACCCTTAATACGGGCCAAAAACAAGAATTTTGATCTC
TTTTCCCGCGTAGGATGTTTGCATGTAGCTAATTTAGCTGGGATTTCTGT
ATTTTTATGCCACGACAAGAAACCGCTGGTATTTCATCCTTTCAGCAGTA
TCAGCTAGAACGCTACCTGGAAAGACCCAGGGAGATTTCTACCCGCATCT
TCCTTGCGAGAAGTCGCTGCCTTTTGCTGCTTCCCAGGGCTTTTTGTTTC
GCGAGAGAAAGTGCGGCACGAATTGGTTGCACCTTAGAGCAAAAATACCT
CAAAGAGGTTCGTTGTGTAGCTACATCCGGAGGGGACAAGCTTCGAGGAT
ACAACGGTGTTGTGTTGCTCTACCCTCATGGTTCCCTTCTCTCCCATCAC
GTTTGGAAGGCTTGCGCGCTGCAAGTCGCGACCACGCTTCCAGCGTTTCT
GCGCGGAGCTCGTGAGGTTCCCGGAGCCCTCACTTTGTTGCTTTCCACGA
CGCAGCGCTTGTGGCCAAGCCCATCAGACTCGTTTGTGTCGGGGGTCAAT
CTCGCTCGCCGTTTTTTTATCCAGGCGCCTTGCATGGACAACTTTTTGCC
CTGGGAGGTGCTACCCTGCGATCCTCAGAATAGGGACTCCATCTACGAGC
TGGACCCTGACGGGCAAGCGTACGGCAACGTCTACGAGCTACGAAAGGTG
AAGTAGACAAGATAAGAGACGCAACGGGGGGAGAGAACCGCGCTGCCCTT
GTTCTTGTGTGCAGGCAGGCAGGGTTCTTCTTCCCCCCCTCTTGTCGTTC
TCTCCCCTGGCCTGCCCATCCATTTCGCCACAAAACTCCCCAAGCTCTCT
TACTAGGAGCCATCGCCCTCTTGTTTGCACCTAAATACCTATCCACTACA
TGTACCCGTCTCGCGGTTGTGTCGTGCCTACCCCTGGCACACATACATAC
TTCCCCCCACCTCCGTCACACTAAGTGTGTCTCCCTTTTCCTCACCTCCG
TCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTG
TATCCTTTTTGTGCCGACCGCTGTGTTGGGTTTTTCTCGCCGCCCCTGTC
ATCGTCTTGAAACGTTTTGTGCTCCCTCTCCGCCCCTTTCCTCCCTCTAG
CGTGTTCGTAAGGAGTGGTTGTGCGTGTTGCATGACCCCCGACACCCACC
TCGTCCTCTTGGGGCCTAAGTAAATGGGACGTGTTCCCCATGTCGGCCGG
CTTGTGTTTCCAGGCGAAAATTCGAGATTTCAGTGCGATCAAGCTGTGGG
CACCCTACTACGAGAAGATTTTGTACGAAGACATGCTTGAGGGCGACGGG
CTGAATGATTGGTTGAAGTCGCTCGACACGATGTGAGTATTCTCTGAAAC
AGGGCTGCTTTGGATTTGGCAGGGGTACATAAGGCGTTGCAGAAAACGCC
GTCGTTCCTGTGTGTCCGCCCCCCCCCCAGGCGGGCTTCGATATACATCT
ATAATGCCGTATACGACAAAAGATAACACACCCCCTGGACCGATTTTCAA
AGCTCAAGGTCTCGACGGCGATAAGAGTATCAGTCCCGAAAAGGGCGGCG
TTGGAAAGATCTCATTAGAGCTGTCCGAAAACGTGTCGTTTGGTACTAGA
AATCATAGTCGTTGCGGAGTAACCGAGCTTTGAAAATCGGTCCAGGGGGT
GTGTCATCTTGGGTCGTATACGGTAGTCCCAGCGCGTTTCCTGCGCTGCT
GTGTGCTGTCCGCATTCGTTCCCGTGGACATCGGATCTGCTACTTCGCTC
GAAAAATTCGCTTTTTAAGGGAAAGAGGGGAAAACTGCAAGCGCAAGCAC
ACTGACAGCTCGAGCGCGTTTGAGCAGCTCAAGAACGCCCCCCCCCCCCC
CGACCAAGCATTCATATCGTGTTTCAACCCCCTTTCTGCCCGCCCCCTAG
GCTTGGCAGATAAACTGCGCACATAGGTGAACATGCTGTTTGGGTCTCAT
CAGCAGCTTGCTCTAAGCGTTTTTACCGTGCGTAGGTGACACAAGATACC
ACACGCGCTGGACAGATTTTTCAAGCTCGATTCCTCCCCAGCAAGAAGAG
CGCCAGCGCCGAAAGAGGGTGGGGTTGGAAATATCTGGTCAAGGGCTGTC
CGAAAAGCTCGATTCCTCCCCAGCAAGAAGAGCGCTAGTGCCGAAAGAGG
GTGGCGCTGGAAATATCTGATCAAGGGCTGTCCGAAAATGTGTCGTTTGG
TGCTGGCGCCCTCTTCGTTTCGGAGTATTAGAGCTCTCAGCCTCGGTCCA
GGGTGTGTGGTATCTTGTATCACACACGGTACCCCCGACACGACAGACCC
GCCCGTATACCGTCCCTTCTTCGGTTCTTTGCTGAACTGGCTCTTTTGCT
TTGCTTTGCTTTGCTTTGCTTTGCCTTGCTTCAGCTACGGGCTGAGCGGG
AAGTATGGAAGTGTTCCGGATCAAAGGCTCGCGAAAAATACGGCAACGTT
GCGGAACCACATGTATTATCTGAACAGGTGAGTTCAGTGAGGTTGCTGGT
GTGGATCGGTAAATATACATACGGCGGTGTGCGGTATATTTTGAGTTTTA
AATCGTTCGAAATCGCTCAAAATGCTGCGGTGCTTGAGGTTTGAAGACAG
ACCACTTCGAGATCAGCAAGACGTGGTGGGTTTTGTGGAAATTTCAAGAA
AAAATGGGCTGTGTTCAATACCCCCCCCGGATGGAGGTACAGAGAAGATT
AGAGCGGGTGCCATCCTGAGAACCCCCCGCCTACCCACTCGCCCAGCCAT
CCAAACCCGGTGTCCGCACGCCACCTGTTCTAGCACGGTTAAAGTATTTC
TTGGATTTTTGCTTCGGATCGGCAATCAATGCCTGGTCGGATGCTTGTGT
GCGTGTGCATGTGTGTGTGTGTGCGGGATGTGTTAGTACTGGTTCCATCT
GTTCTGGCGTATGTCACGTTTCGGCGTCAGCTTATGACGCGGCTTCAAAA
AAACTGTTTTGGTAGATAATACTTTAGGAGTCGCTCAAGACGTTTGATGC
CACTTTTTTCATGCTCGTGTCGGGGCTCGATTCCCGAGCCATCATCAGTC
TAGAGTTGCACATTATAGACCGGGTTACATAGTGTCGCACTAATCCACGG
CGGTCGTTACACATGACGGGCCGGGTTTAGTTGGCACTGACTGATCCACG
GCGGTGGCGCTTGTTTATGTCAAATCTGCGCAGCGGCCACTGTACGCCTC
ATTGCAGAATGGGAGGGGCGGCGGGGGAAAACGCCCTGGAGACGCTGCAC
CGAATGTGGGATGATGAGCTCGAGGGGGGCCTCGGCTACCACAAAGTGCA
ATAGGTTCGAAATGCGCGTCTGCAAACGTAAAAAGTGGTGTTTGGTTTCA
TTGGGTACATACATACGCACCCCGCGGCCGTCATGTTCTCGTGTGAGCCA
CGATGGCCTGCACGCCCGCTTTCCGACATGACCCAGTTTCGCTGCTGCTA
TTTCAGTGCGGAGTACTTTGGAGGGCGAGAAAAGAGTCGTTGTTTGCTTG
ATAGTTTTTTACATACACAAACGATCGAATGTTGCTGTCTTCCAGAAATC
TGGCGGCAACTTTTTTGTCCCGTCGGCGCAACCTGCATACGCAACCTGTA
TAGTATATGTTTTGGCGACGTAGGCCACTCAGTCTTACATACTCTGGGAT
GCAAAAGTGTTGTTGAGGAAAGTGCTCAGTCGGTGCGTCCAACTGCAGCA
ACCCACCTGGAGCTCCGGTATGTGTGAGGGAGGTGGTGGGGCGCTGAGAC
CGATGTTGCTTCACGGTGATCCAAGGATGTGTGCCAGAATGATATGTTTT
GGGCAATGTGGCGCTGGATTACACCGCTTTGTGCTTGCGTGTAGAGTTGG
TGTCGGTATAGACGATATCAGCTGATTTGTTTCCCCCTGAACGCAGCATG
GCTGTGGCCTGCAAGAGGCTTGCTATGCGTGTGTCCTTTGCCGTAGGTGG
GCGTGTGCATCATCACACTCCACTGCCCGGGACAAATTTCCACACCCCAA
TAGCAAGGTTGTGAAAACATTAGAGATGTATCGGTGATATTCTCTAGTAT
TTTCAGGTTTCCTTGTGACGCGCAGATTCGAATGCACCGGTACGACGGGC
ACAGCCAGTACTAAGCATGAAGACTGTCTTTAATTTTTTGGTTGTGGTGT
TTCCAACACGGCGTCCTCGCTGTGGAAAAGAGGCGTTTGCTTGATGATGT
AAAGAATGTGAGTGCTGTTCTTGTGTGTTTGTGGTGTGTTTCACGTTGGA
CACACGACCGTACTGTGTTGTTATGGTTGCTTGGTTTGCCTGTGGTTGTG
GTGATGTTGGCATAAGGAATATTTTCTTATATTTTCTTCGAAGGAAGAGG
CGGGAATGGTGGTTTAAGGGTGTACCACGTAGTTGAGGTCGCGGGGAATA
GACTGCTGGTTCTAATTTCTTCCTCTTTGAAATCAGTACAATAAGAACAC
GTGTTTGGCAGCACAATTTTTATGGGTGTTGGGCGGGATCCGTTTGACTA
TCTTCAGCCCCATTTTCTGTTGAAGGGTAACATCCTGGCTATCTTCGCGT
GTCTGCTGTTTGAGCTGGTTCACAAGGCGTGTATGCCTTTGTTCGTTCAA
TGAAATCCGACCAGGTTGACAGAAAATCGGGCGTTTTGAGACAGTTTAAA
AACACAAAGTTTTCCAGATCGACGGGTAGTGTACACCGCTCCTGCTGTGC
TCCGACTAAGTTCCTCCAAGGATCTCATAAGGGTTGCTCAGCCGAAGACC
GTGTCTCTAAAGGCCTCGAGCGCTACATGGCCGACCCTCGCTGCTGTCTA
CCCCAAGCGTGCATGCCCTCGTTTTGCGGACACTCAAAAATGCAGTTTGC
TCGGTGCAGACTAGGGTTCAAACGGTCGACCGTGGTACGTATTGATCTCT
GCTCTGATACCAGCAGTAAGAGCTGCCTTAAGATAGCCAACTCTAAGGAT
TGACCGAGGAATCTTGGTATTGGTTCTTGTTTCGAAGCGCAAAAGTCGAT
TCTGCGGTGAGATACTCGTAGGGCAGCTGGAGAGAGATCTACACGGCATT
TTCTGTGGGAGATGGCAGAAAAGAACCGCTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7771:1079..8210+

>mRNA_L-elsbetiae_contig7771.16718.1 ID=mRNA_L-elsbetiae_contig7771.16718.1|Name=mRNA_L-elsbetiae_contig7771.16718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig7771:1079..8210+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCGGAACCCCTACGACTGGGTCAGCGGGATGCAGAAGCTGCCGTG
GCATGCCCAGATGTGGCGGAACCCCTACGACTGGGTCAGCGGGATGCAGA
AGCTGCCGTGGCATGCCCAGGCGCATGCAGGCGTGGAGGACTTGAGCACC
TTCATGACGATGCCGTGGACAATGGAGCCCGACGCGCATGCAGGCGTGGA
GGACTTGAGCACCTTCATGACGATGCCGTGGACAATGGAGCCCGACGCCG
AGCAGCGTGCGAGAAAAGAAGCGTCGGTAAAGGCCAAAGACTTGGCCGAG
CAGCGTGCGAGAAAAGAAGCGTCGGTAAAGGCCAAAGACTTGGCGCCTTG
CATGGACAACTTTTTGCCCTGGGAGGTGCTACCCTGCGATCCTCAGAATA
GGGACTCCATCTACGAGCTGGACCCTGACGGGCAAGCGTACGGCAACGTC
TACGAGCTACGAAAGGCGCCTTGCATGGACAACTTTTTGCCCTGGGAGGT
GCTACCCTGCGATCCTCAGAATAGGGACTCCATCTACGAGCTGGACCCTG
ACGGGCAAGCGTACGGCAACGTCTACGAGCTACGAAAGGCGAAAATTCGA
GATTTCAGTGCGATCAAGCTGTGGGCACCCTACTACGAGAAGATTTTGTA
CGAAGACATGCTTGAGGGCGACGGGCTGAATGATTGGTTGAAGTCGCTCG
ACACGATGCGAAAATTCGAGATTTCAGTGCGATCAAGCTGTGGGCACCCT
ACTACGAGAAGATTTTGTACGAAGACATGCTTGAGGGCGACGGGCTGAAT
GATTGGTTGAAGTCGCTCGACACGATCTACGGGCTGAGCGGGAAGTATGG
AAGTGTTCCGGATCAAAGGCTCGCGAAAAATACGGCAACGTTGCGGAACC
ACATGTATTATCTGAACAGCTACGGGCTGAGCGGGAAGTATGGAAGTGTT
CCGGATCAAAGGCTCGCGAAAAATACGGCAACGTTGCGGAACCACATGTA
TTATCTGAACAGCGGCCACTGTACGCCTCATTGCAGAATGGGAGGGGCGG
CGGGGGAAAACGCCCTGGAGACGCTGCACCGAATGTGGGATGATGAGCTC
GAGGGGGGCCTCGGCTACCACAAAGTGCAATAGCGGCCACTGTACGCCTC
ATTGCAGAATGGGAGGGGCGGCGGGGGAAAACGCCCTGGAGACGCTGCAC
CGAATGTGGGATGATGAGCTCGAGGGGGGCCTCGGCTACCACAAAGTGCA
ATAG
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