mRNA_L-elsbetiae_contig7770.16715.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7770.16715.1
Unique NamemRNA_L-elsbetiae_contig7770.16715.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7770.16715.1 vs. uniprot
Match: D8LDU7_ECTSI (BSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU7_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 5.110e-37
Identity = 82/121 (67.77%), Postives = 92/121 (76.03%), Query Frame = 1 
Query:  223 MWSLIRKDLGEFVSTLKDDAAVTIKSAMTQGEEEEEGYDSSYDGGDGGEIKGRRXXXXXPATAALRAMRADIKTYTEDIAESSQSERLTSFLDSFDLGARTKDIATLLKEDPVVGKIHTQL 585
            MW LIRKDLGEFV+TLKDDAAVTIKSAM   E EEE YDSS         +G R     P TAA+RA+RADIKTYTED+ ES QSER ++F+  FDLGARTKD+AT+LKED VV KIHTQL
Sbjct:    1 MWGLIRKDLGEFVTTLKDDAAVTIKSAMALREGEEEDYDSSXXXXXXXXAEGERNRQ--PVTAAIRAIRADIKTYTEDVPES-QSERFSAFVAKFDLGARTKDVATILKEDTVVTKIHTQL 118
[Close]
BLAST of mRNA_L-elsbetiae_contig7770.16715.1 vs. uniprot
Match: A0A6H5JV15_9PHAE (BSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV15_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.040e-21
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  346 YDGGDGGEIKGRRXXXXXPATAALRAMRADIKTYTEDIAESSQSERLTSFLDSFDLGARTKDIATLLKEDPVVGKIHTQL 585
            YD  +  E +G R     P TAA+RA+RADIKTYTED+ +S QSER ++F+  FDLGARTKD+AT+LKEDPVV KIHTQL
Sbjct:   10 YDDSEDDEAEGGRRRQ--PVTAAIRAIRADIKTYTEDVPDS-QSERFSAFVAKFDLGARTKDVATILKEDPVVTKIHTQL 86
[Close]
BLAST of mRNA_L-elsbetiae_contig7770.16715.1 vs. uniprot
Match: A0A6U4E8C6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4E8C6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.910e-12
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = 1 
Query:  223 MWSLIRKDLGEFVSTLKDDAAVTIKSAMTQGEEEEEGYDSSYDGGDGGEIKGRRXXXXXPAT---------AALRAMRADIKTYTEDIAESSQSERLTSFLDSFDL--GARTKDIATLLKEDPVVGKIHTQL 585
            MWS I +DL EFVST+ DD    I                   G DG E  G       P+T         AA++ +RAD+KTYTE I  + Q++   +FLD FDL   A + DI+ LL+EDP + ++HT++
Sbjct:    1 MWSAITRDLQEFVSTVADDTTAVIA------------------GKDGAESDGENGGTVSPSTPSTNASDVPAAVKLLRADLKTYTEPIPAAEQAD-FEAFLDGFDLMGEASSADISQLLEEDPTLSQVHTEV 113
[Close]
BLAST of mRNA_L-elsbetiae_contig7770.16715.1 vs. uniprot
Match: A0A7S2WTQ6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTQ6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.620e-10
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 1 
Query:  172 GGLPPIPLTTLG*SWLVMWSLIRKDLGEFVSTLK---DDAAVTIKSAMTQGEEEEEGYDSSYDGGDGGEIKGRRXXXXXPATAALRAMRADIKTYTEDIAESSQSERLTSFLDSFDLGARTKDIATLLKEDPVVGKIHTQL 585
            GGL   P +T       MWS+I++DL EFV+ +K   ++AA  + SA+ Q +  +   D S                    +A LRA++AD KTY++ +A + Q+    SF   FDL  +T  I+ LL ++PVV +IH +L
Sbjct:   26 GGLQCGPRST-------MWSVIQRDLAEFVTVVKSGTEEAAANVVSAVRQADAPQGKQDRS--------------------SAGLRALQADKKTYSDPVANADQAH-FQSFSTKFDLAEKTTTISELLSDEPVVARIHAEL 138
[Close]
BLAST of mRNA_L-elsbetiae_contig7770.16715.1 vs. uniprot
Match: A0A6H5JSM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSM7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.560e-10
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  223 MWSLIRKDLGEFVSTLKDDAAVTIKSAMTQGEEEEEGYDSS 345
            MW LIRKDLGEFV+TLKDDAAVTIKSAM   E EEE  DSS
Sbjct:    1 MWGLIRKDLGEFVTTLKDDAAVTIKSAMALREGEEEDDDSS 41
[Close]
BLAST of mRNA_L-elsbetiae_contig7770.16715.1 vs. uniprot
Match: A0A7S2DKM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKM4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.720e-8
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:  238 RKDLGEFVSTLKDDAAVTIKSAMTQGEEEEEGYDSSYDGGDGGEIKGRRXXXXXPATAALRAMRADIKTYTEDIAESSQSERLTSFLDSFDLGARTKDIATLLKEDP 558
            ++DLGEFVST+K DA   + + +      E+   +   GG       +      P  A LRA+RADIKTY+  I++  +++   +F   F + ++T D++ +LKEDP
Sbjct:    1 KRDLGEFVSTVKVDAGTAVSNTV------EKVSSAVAVGGTSESATAKPSIQKLPQNANLRALRADIKTYSAVISDE-EAQSFETFSGRFSVSSKTLDVSKILKEDP 100
[Close]
BLAST of mRNA_L-elsbetiae_contig7770.16715.1 vs. uniprot
Match: A0A7S3YEL0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEL0_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 3.840e-7
Identity = 42/125 (33.60%), Postives = 62/125 (49.60%), Query Frame = 1 
Query:  223 MWSLIRKDLGEFVSTLKDDAAVTIKSAMTQGEEEEEGYDSSYDGGDGGEIKGRRXXXXXPAT----AALRAMRADIKTYTEDIAESSQSERLTSFLDSFDLGARTKDIATLLKEDPVVGKIHTQL 585
            MW+ IR+DL EFV+ +  D    +       EE  E         D  +I   +       T    AAL+A++ DI TY E+I++    E    F    D+ A+TK+I+ LLK +PVV ++ TQL
Sbjct:    8 MWNAIRRDLAEFVNVVATDTTAKL-------EEVAEEVSKRIPLPDEEDIPDEKEQEQLRKTRLEQAALKALQNDINTYQEEISDQELME-FRMFEQRLDVSAKTKEISELLKSNPVVAQLQTQL 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7770.16715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LDU7_ECTSI5.110e-3767.77BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JV15_9PHAE3.040e-2163.75BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6U4E8C6_9STRA4.910e-1237.12Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WTQ6_9STRA2.620e-1034.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JSM7_9PHAE3.560e-1080.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2DKM4_9STRA3.720e-833.64Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3YEL0_HETAK3.840e-733.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7770contigL-elsbetiae_contig7770:2257..5510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBSD
Ec32 orthologEc-08_003390.1
Exons3
Model size587
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7770.16715.1prot_L-elsbetiae_contig7770.16715.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7770 2257..5288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.3567624-CDS-L-elsbetiae_contig7770:2256..23881622816861.3567624-CDS-L-elsbetiae_contig7770:2256..2388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7770 2257..2388 -
1691683868.7705235-CDS-L-elsbetiae_contig7770:2256..23881691683868.7705235-CDS-L-elsbetiae_contig7770:2256..2388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7770 2257..2388 -
1622816861.368942-CDS-L-elsbetiae_contig7770:3598..37061622816861.368942-CDS-L-elsbetiae_contig7770:3598..3706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7770 3599..3706 -
1691683868.781269-CDS-L-elsbetiae_contig7770:3598..37061691683868.781269-CDS-L-elsbetiae_contig7770:3598..3706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7770 3599..3706 -
1622816861.3797104-CDS-L-elsbetiae_contig7770:5165..52881622816861.3797104-CDS-L-elsbetiae_contig7770:5165..5288Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7770 5166..5288 -
1691683868.7927825-CDS-L-elsbetiae_contig7770:5165..52881691683868.7927825-CDS-L-elsbetiae_contig7770:5165..5288Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7770 5166..5288 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.3898582-UTR-L-elsbetiae_contig7770:5288..55101622816861.3898582-UTR-L-elsbetiae_contig7770:5288..5510Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7770 5289..5510 -
1691683868.8066082-UTR-L-elsbetiae_contig7770:5288..55101691683868.8066082-UTR-L-elsbetiae_contig7770:5288..5510Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7770 5289..5510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7770.16715.1

>prot_L-elsbetiae_contig7770.16715.1 ID=prot_L-elsbetiae_contig7770.16715.1|Name=mRNA_L-elsbetiae_contig7770.16715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MWSLIRKDLGEFVSTLKDDAAVTIKSAMTQGEEEEEGYDSSYDGGDGGEI
KGRRQQQQQPATAALRAMRADIKTYTEDIAESSQSERLTSFLDSFDLGAR
TKDIATLLKEDPVVGKIHTQL
back to top

mRNA from alignment at L-elsbetiae_contig7770:2257..5510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7770.16715.1 ID=mRNA_L-elsbetiae_contig7770.16715.1|Name=mRNA_L-elsbetiae_contig7770.16715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3254bp|location=Sequence derived from alignment at L-elsbetiae_contig7770:2257..5510- (Laminarionema elsbetiae ELsaHSoW15)
GATGGACTCCGTACAAAAGGAAACCAGACGGCACACGGCACAGACCAGTC
GAGTCGTCGAGTTGTGCTTCGAGCTTCTGAGGTGCCTGTTAACAACCGCT
CTTGTGGAACGCGTTGAACATTGCGACATTTCGAGAGAGAGAAGACGTGT
GTGTGCCTTTTCCTCGGGGGCGGCGGCCTCCCTCCCATCCCTCTTACTAC
TCTGGGTTGAAGCTGGCTCGTGATGTGGAGCTTGATTCGGAAAGACCTTG
GGGAGTTTGTGAGCACCCTCAAGGATGACGCTGCGGTTACCATAAAGTCG
GCGATGACGCAGGGCGAGGAAGAGGAAGAGGGTTACGACAGCTCGGTGAG
ATGTTCGTTGGTTTAGTTTTGTGGGAGTTTTCTCCGCCTCCTGCTTGCGT
GCCCCCCAACTGCTCGCAAAAAAAAACTGTTGTACATATGATAGCATAGG
CATCGATAAACCTGCACAGCAGCACGTGCTGGTTTTGACGATGAGGTTGT
GCCAACCATGTCTGTGTCGTGTATTATAGACGTTCTGGACACAGGTCGCT
TCTCGTAACCGTACGTGACACAAGATACCACCTCCCCCCCGTGATACATA
TCTGCCTGTACCGTCGAGAACAGTGCTGTCACGCCAGTCTAAGGGGGCGC
CAGTAGGAAACACCCTTTCGGCTGCTGTGCGGTCCGGCGACGACGCTATA
TACAGATCTAAGGCACTGCGGCCGTAGAGCTCTGCCTTCCCTGTCTAAGG
ACACCTGATTTGTCAAGCTTCTCTCGCTATTGCCCTCAAACCCGACGAAA
CAAACTTTCGCAGTTGTGCCGCAAAATAACTTCGTGCGGCGCAACCTCCC
GCTGGGTGGCGCGCGGCTTTCACTCGATGACGAGAACGCGTCGCAGACAG
AACAGATGGTTACGAAATTTGGCACGTAGACTAGACGTACCCTGAGGACC
TAGCACCGAAAGTGGCGCGTCGAAATACACACAGCGGCAGTCAGGAGGGA
CGATTTTCTCATAAAATTCGCCTTCGCGCACAGGCATCATCCTTAGCTTC
CTACCAACGGTTTAGGGAGGGTGCACTGGTATGTCAAAGAGGGTGTTGTT
AGGGTTTCTCAGCAGTTCGATTTTTGCTGCAACACGCAACATAGACCGAG
AACTCGCAATCGGCGCGAAGCAAGTTTTGAATTTGCGCGGATATCGTAAA
TATGCACTCTTCGGTCGATTCAAAAAAAAGATCCGGCGGTGTTATTGTGG
GGGGGGGTGTTATCGTCTGTACCCGTGGTACCTTGTGTCACTTACGGTAT
TTTTTCTCCGTATTGGCCCGCTACGTAGACTGTAGTCTTCAGCAACAGCA
GCTCACAGCCGTATTGGTAGCAGCTTCTCCTAAAAAGGGGTGATCGAATT
GCCAATAACATCATCCCTGGCTCTGTCAGCTTGGTCTCCCTGTCCAACCA
CCGCCGCACAGGCTTTGATACCATGCGGCCAGGAACTCTGGTTGAACGCC
TTGCTGGTCCCTGCCCCGGACCCCCCCCCCCCCCCCCCCCCCCCCCCCAA
CCCGTCCGGTCCCCCCCCCCACTCCCCCCCGCCGACTCCCCGCCGCCCGG
GNNNNNNNNNNCTTGGTCCCCCCGTCCAACCCCCCCCCCCCCGGCTTTTG
CACCCCGCGGGCCGGAACTCTCGTCTTCCGCCTTGCTGTCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCGCTTTCGTTTGCTGTGGTCACGCTCTGCA
AAATGATCGGCTGTTGGCTCCGCACCCGCCGGCGTGTTCATCCAACCGAA
CCAGTACGACGGCGGCGACGGCGGCGAGATCAAGGGGCGGCGGCAGCAGC
AGCAGCAGCCGGCCACCGCGGCACTTCGCGCGATGAGGGCAGACATCAAG
ACGTACACCGAGGTGGGTGTGGGCGGGGGGGGGCACTCGTGTGCGTATGT
ATGATTTCAAGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGTGGGGCCGAGGGGGACCCGCGGCCCGTGGTGGTGGGGGTGGGGGGGG
TTGGGGTGGGNNNNNNNNNNGAGACAAGAGGGTGGGCCGGGGGGGGGGGG
GGGGGGGGGGGGGCGTGTGGTGGTGTGTATAGGTTTGGGGGGGGGGGGGG
GGGGGGGGGGGGGTTGCAGAAGGTGGTCGAGGCACGATCCACGAGGCACG
CCAGCCCCGTGTTGTGTTGTGGAAGTGAGTTGTCTTGGCGTCTGGCGCGC
TTTGCTTCCGTCGTCAAACGTATCCCGTGACGTCGAGACATCCACCCTCC
TATGGGCGGTGTGCCCGTAAGTGGCCGCTGTGTAACCGTAGGTTGTGTAA
CCGTATTTTCACTGGTGACCCCTTTGTACGTCTCTTGATCGACGTTGACG
AGGGACAACACACGTGTGTGGTCATTTAAACTACATGCACTGCCCTGATC
GTATTCCTTAGCCGTGGCGCTTGAAAGGAACTGGCGTTTTTTTTCCTCGG
TATTTTTCGGTGTTTCTTTCCGCGTGCCAGCAGCTTGTGCGAGAGTGTTG
CCCCGTGGATGCGCACCCTTGGCGGCGGCCACACCTAGTTGGTTCAACGT
GCCGTGCGCAGGCAGCAGCACCACACCAACCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCGGGGGTGGTGGTTCTTTTTTTTTTTTCCCCCCCGCCCCC
CCCCTCCCTTCCTTTTCCCCCCCNNNNNNNNNNGGGTGTTGCCCCCGGGG
GGCGCCCCCTTGGGGGGGGCCCCCCCCAGTTTGGTTACCGGGCCGGGGGC
AGGCAAGAACCCCCACCCCCCCCCCCCCCCCCCCCCTATGCTAGCACCGA
AGTAGTGTTTCGTTTTCGTTTTGATGCCCCCTTACCGTGACCCTCTTCGC
TTGTTTTCGCGCATAATAGAGTACTCTAGTGCATGCCTCTGCTGCGTCGG
GCTATTTCCCGTCAAAAAAATCCCGGCCCCCCTACACCGAACCCCCGACT
CCAAAAAATGAAATTCATTGTGTTTAGCTTTTCGTTGGCCGTCGCTCTTT
TTGTTGCGGCTATCCTACACGTGTATCATGCATGCGTATATATATATATA
TACGTACGACGTCGGCGCGCAGGACATCGCTGAGTCGTCGCAGAGCGAGC
GGCTCACGTCGTTCCTGGACAGCTTCGATCTGGGGGCCCGGACAAAGGAC
ATCGCCACGCTCCTCAAGGAGGACCCGGTTGTCGGCAAGATTCACACGCA
GCTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7770:2257..5510-

>mRNA_L-elsbetiae_contig7770.16715.1 ID=mRNA_L-elsbetiae_contig7770.16715.1|Name=mRNA_L-elsbetiae_contig7770.16715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig7770:2257..5510- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGAGCTTGATTCGGAAAGACCTTGGGGAGTTTGTGAGCACCCTCAA
GGATGACGCTGCGGTTACCATAAAGTCGGCGATGACGCAGGGCGAGGAAG
AGGAAGAGGGTTACGACAGCTCGATGTGGAGCTTGATTCGGAAAGACCTT
GGGGAGTTTGTGAGCACCCTCAAGGATGACGCTGCGGTTACCATAAAGTC
GGCGATGACGCAGGGCGAGGAAGAGGAAGAGGGTTACGACAGCTCGTACG
ACGGCGGCGACGGCGGCGAGATCAAGGGGCGGCGGCAGCAGCAGCAGCAG
CCGGCCACCGCGGCACTTCGCGCGATGAGGGCAGACATCAAGACGTACAC
CGAGTACGACGGCGGCGACGGCGGCGAGATCAAGGGGCGGCGGCAGCAGC
AGCAGCAGCCGGCCACCGCGGCACTTCGCGCGATGAGGGCAGACATCAAG
ACGTACACCGAGGACATCGCTGAGTCGTCGCAGAGCGAGCGGCTCACGTC
GTTCCTGGACAGCTTCGATCTGGGGGCCCGGACAAAGGACATCGCCACGC
TCCTCAAGGAGGACCCGGTTGTCGGCAAGATTCACACGCAGCTGGACATC
GCTGAGTCGTCGCAGAGCGAGCGGCTCACGTCGTTCCTGGACAGCTTCGA
TCTGGGGGCCCGGACAAAGGACATCGCCACGCTCCTCAAGGAGGACCCGG
TTGTCGGCAAGATTCACACGCAGCTG
back to top