mRNA_L-elsbetiae_contig7768.16711.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7768.16711.1
Unique NamemRNA_L-elsbetiae_contig7768.16711.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7768.16711.1 vs. uniprot
Match: A0A6H5KCM2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.380e-12
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 2 
Query:  194 LRASCDFCTRRKRKCDGDGVSRCSFCIAKKQPECHYGVRLLTGPRA 331
            +R SCDFC  RK++CDGDGV+RCS+CI KK P C Y  R    PRA
Sbjct:   45 IRKSCDFCNGRKKRCDGDGVNRCSYCIIKKNPHCIYSPRRPQKPRA 90
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BLAST of mRNA_L-elsbetiae_contig7768.16711.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.400e-9
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 2 
Query:  194 LRASCDFCTRRKRKCDGDGVSRCSFCIAKKQPECHYGVRLL 316
            L+ SCDFC +R+++CDG    RCSFCI K +PECHY +R L
Sbjct:  100 LKKSCDFCFKRRKRCDGRAQRRCSFCIEKGRPECHYSMRSL 140
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BLAST of mRNA_L-elsbetiae_contig7768.16711.1 vs. uniprot
Match: D7FTE0_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE0_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.190e-6
Identity = 31/83 (37.35%), Postives = 40/83 (48.19%), Query Frame = 2 
Query:   71 MANIKKDPSFGASSRADKGAGSLPVTTMTP-RLAPTAVPSGRLRASCDFCTRRKRKCDGDGVSRCSFCIAKKQPECHYGVRLL 316
            M    ++P+     +    +   P  T TP   A  A P  +   SC FC +RKR CD     RCS CI KKQP CHY ++ L
Sbjct:   12 MVATTQEPTVMEGMQRQPQSAGQPAYTATPAEAAVEAAPPRQTYKSCTFCAKRKRACDSQRP-RCSLCIEKKQPYCHYPLKPL 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7768.16711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KCM2_9PHAE3.380e-1260.87Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5K678_9PHAE4.400e-958.54Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FTE0_ECTSI1.190e-637.35Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7768contigL-elsbetiae_contig7768:7016..9057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size352
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.8777466-CDS-L-elsbetiae_contig7768:7015..72791622816860.8777466-CDS-L-elsbetiae_contig7768:7015..7279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7768 7016..7279 +
1691683868.3581095-CDS-L-elsbetiae_contig7768:7015..72791691683868.3581095-CDS-L-elsbetiae_contig7768:7015..7279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7768 7016..7279 +
1622816860.894085-CDS-L-elsbetiae_contig7768:8970..90571622816860.894085-CDS-L-elsbetiae_contig7768:8970..9057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7768 8971..9057 +
1691683868.3681262-CDS-L-elsbetiae_contig7768:8970..90571691683868.3681262-CDS-L-elsbetiae_contig7768:8970..9057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7768 8971..9057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7768.16711.1prot_L-elsbetiae_contig7768.16711.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7768 7016..9057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7768.16711.1

>prot_L-elsbetiae_contig7768.16711.1 ID=prot_L-elsbetiae_contig7768.16711.1|Name=mRNA_L-elsbetiae_contig7768.16711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
YNLWFLADSQKAGDDTLAFPGTIDGQYKEGPELWSQQPGGQRGWESTGNH
HDPSPCPNSCAERAASGIVRLLHKEKAQVRWRWCEPLQLLHCQEATGVPL
RRQASHRPSGRQRQAI*
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mRNA from alignment at L-elsbetiae_contig7768:7016..9057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7768.16711.1 ID=mRNA_L-elsbetiae_contig7768.16711.1|Name=mRNA_L-elsbetiae_contig7768.16711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2042bp|location=Sequence derived from alignment at L-elsbetiae_contig7768:7016..9057+ (Laminarionema elsbetiae ELsaHSoW15)
TACAACTTGTGGTTCTTAGCCGACAGCCAAAAAGCCGGAGACGACACTTT
GGCCTTTCCCGGGACTATCGATGGCCAATATAAAGAAGGACCCGAGCTTT
GGAGCCAGCAGCCGGGCGGACAAAGGGGCTGGGAGTCTACCGGTAACCAC
CATGACCCCTCGCCTTGCCCCAACAGCTGTGCCGAGCGGGCGGCTTCGGG
CATCGTGCGACTTCTGCACAAGGAGAAAGCGCAAGTGCGATGGAGATGGT
GTGAGCCGTTGCAGGTATGCGTTAGACGTGTGGTTTGCGTGTGTTGACTG
CTTCCTCCAGATTTTTGTTACATCGTCTACTTCGACAAAATATTCAATAT
GCACCGTCAACATGCTGTTTCAAATTTCAGAACAAGAACAAACATCCCGC
CCGCATTTCAAGTTTGATGTCGAATGTCGGTTGCGGCACGCAGGCGGTTG
AGTGTTCTTTTTTGCTGCTTGCGTCGAGGCATGGCGGGCTTTTTCCATGC
CCATCGACAGACGCAGTTTTGTACAGCAGTACCATACGCGAAAGCGCTCC
GATCTCTGCCCATCGCGCCGAGAGAAAAATACTTGCTCGTGAAGTTGCAA
CAGCCGTTTACTACGTATTTACTGGTACGCCAGAAATATTTATATTTAGT
GCCTTCTGGTCGCAGCCTCTGTTATGTACTACTGGTGTTGCTTGCATATA
TATATACTTCTGTAGACTGTGCGTCTAGACTTGAGAGAGAAAAAATGGTT
GATATCGTATAGCAAAAACTCACACAAAAACGATTCCATCAGACGGCAGG
CCCGTGCAGAATATCTAGATATGTAGACTGAGTTTCACGAGAGAGGGGCC
AAACACGTTGACAGCAGCAGTGTAGGTACGCGGAAACCATTGCGGCACTC
CCAAGTAGTACTTAATGAAGTCTATGTCTGTAAACGTCGTCGGACCCTAC
GTATGCACTTCTCCCGGGACAGCATGCTTTGCACCTACTCTATCTATGTA
GTAGATCTTGGCGTCTGCCGACTGCTTCCACTGTGATTGGAGAAACCCTC
TGATGTCCGGCTGCAAGGTCGGCTAGGTGGCGCACGTGCTGCACATATCT
ATGTATGTACGCGGAATCCCATCTTCGGCTCTCTGCGTAGATAATATTGT
TTTTAAGGACCAAGCGCAGCCAGTCCCGAGAACGGCGGTAGCGTCTTCAT
GCCGTCACCCCCCGCGCTCTCACCATCTTGGGGGTTTTATCTGACTTTCG
CTTGTCGTCCTTGGTCGTCCTCAGCTCTTCGGCGTACGTTCTCCATACAC
ACATATGTATGTACATATTTATGGTATGGAAATAAATCTCCTTTTTGTCA
TCAGACATCAGAGAGCTTTTGGTGACATCATCAGACATCAGGGCTTTTGG
TGGCCAATCTTGACATCAGAGCTTTTGGTGCGCGGGTGATGTCGAGATTG
GCCGCAATTTTGGACAACCCTTCCTGTTGCGGGGGGGTTGTTTCGAATAA
AAGGGAGGGGCCGTTTTTATACCCCCGTTGGTGATGTATAGATAAGCTTT
TCATTTTTGTGTTCACCTGGCATTGCGTGTCGAGGGAAGTGGCGTATGTA
TGAATCTGCTTTTGTCGTTCAGGAAGTACATAAAATCTAGATATGTGTTT
TTGATATATGCATCGCTTTGTCGACTCTCTTTCCGTTTATCATTGATAAG
TTAAAAAATGATCTAGTCAGCCTGTGGCCCCGGGATCGGCGGCATCATGC
GTTGGATGAGTGCAGATAGATGACGATACTGAGTACAAGGATCGGAACGG
CTTTATATGTAATGACGACAACATCAACAAACACCCCCTGGGACCAGGCA
CTGAGTATCGCTCTCTCCGCGTGGTTTACCCTGCGTTCGCACCGTGGACG
GCGGTGCGATGCCCACCTGCCCCGCCCCCTTGCCGCCGTGACCCAATTAA
AACAGCTTCTGCATTGCCAAGAAGCAACCGGAGTGCCACTACGGCGTCAG
GCTTCTCACCGGCCCTCGGGCCGGCAGCGTCAGGCAATCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7768:7016..9057+

>mRNA_L-elsbetiae_contig7768.16711.1 ID=mRNA_L-elsbetiae_contig7768.16711.1|Name=mRNA_L-elsbetiae_contig7768.16711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig7768:7016..9057+ (Laminarionema elsbetiae ELsaHSoW15)
TACAACTTGTGGTTCTTAGCCGACAGCCAAAAAGCCGGAGACGACACTTT
GGCCTTTCCCGGGACTATCGATGGCCAATATAAAGAAGGACCCGAGCTTT
GGAGCCAGCAGCCGGGCGGACAAAGGGGCTGGGAGTCTACCGGTAACCAC
CATGACCCCTCGCCTTGCCCCAACAGCTGTGCCGAGCGGGCGGCTTCGGG
CATCGTGCGACTTCTGCACAAGGAGAAAGCGCAAGTGCGATGGAGATGGT
GTGAGCCGTTGCAGTACAACTTGTGGTTCTTAGCCGACAGCCAAAAAGCC
GGAGACGACACTTTGGCCTTTCCCGGGACTATCGATGGCCAATATAAAGA
AGGACCCGAGCTTTGGAGCCAGCAGCCGGGCGGACAAAGGGGCTGGGAGT
CTACCGGTAACCACCATGACCCCTCGCCTTGCCCCAACAGCTGTGCCGAG
CGGGCGGCTTCGGGCATCGTGCGACTTCTGCACAAGGAGAAAGCGCAAGT
GCGATGGAGATGGTGTGAGCCGTTGCAGCTTCTGCATTGCCAAGAAGCAA
CCGGAGTGCCACTACGGCGTCAGGCTTCTCACCGGCCCTCGGGCCGGCAG
CGTCAGGCAATCTAACTTCTGCATTGCCAAGAAGCAACCGGAGTGCCACT
ACGGCGTCAGGCTTCTCACCGGCCCTCGGGCCGGCAGCGTCAGGCAATCT
AA
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