mRNA_L-elsbetiae_contig7767.16710.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7767.16710.1
Unique NamemRNA_L-elsbetiae_contig7767.16710.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7767.16710.1 vs. uniprot
Match: D7FXN1_ECTSI (Copine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN1_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 7.420e-10
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = -2 
Query:    4 DTSQVVKLHSPSESTESVEIGRTEIISNSLDPNFVTIVP 120
            D   +VKLHSPS+S ES EIGRTEIISNSLDPNFVTIVP
Sbjct:   33 DPFVLVKLHSPSDSNESKEIGRTEIISNSLDPNFVTIVP 71
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BLAST of mRNA_L-elsbetiae_contig7767.16710.1 vs. uniprot
Match: A0A6H5L3T5_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T5_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 9.020e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = -2 
Query:    4 DTSQVVKLHSPSESTESVEIGRTEIISNSLDPNFVTIVP 120
            D   +VK+HSPS+S ES EIGRTEIISNSLDP FVTIVP
Sbjct:   67 DPFVLVKIHSPSDSNESKEIGRTEIISNSLDPKFVTIVP 105
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BLAST of mRNA_L-elsbetiae_contig7767.16710.1 vs. uniprot
Match: A0A6H5LMQ8_9PHAE (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LMQ8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.250e-8
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = -2 
Query:    4 DTSQVVKLHSPSESTESVEIGRTEIISNSLDPNFVTIVP 120
            D   +VKLHSPS+  ES EIGRTEII+NSLDP FVTIVP
Sbjct:   63 DPFVLVKLHSPSDGNESKEIGRTEIITNSLDPKFVTIVP 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7767.16710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXN1_ECTSI7.420e-1082.05Copine n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5L3T5_9PHAE9.020e-976.92C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6H5LMQ8_9PHAE4.250e-874.36C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7767contigL-elsbetiae_contig7767:8211..8611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7767.16710.1prot_L-elsbetiae_contig7767.16710.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7767 8221..8611 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.8101254-UTR-L-elsbetiae_contig7767:8210..82201622816860.8101254-UTR-L-elsbetiae_contig7767:8210..8220Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7767 8211..8220 +
1691683868.3166628-UTR-L-elsbetiae_contig7767:8210..82201691683868.3166628-UTR-L-elsbetiae_contig7767:8210..8220Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7767 8211..8220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.822668-CDS-L-elsbetiae_contig7767:8220..83401622816860.822668-CDS-L-elsbetiae_contig7767:8220..8340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7767 8221..8340 +
1691683868.327195-CDS-L-elsbetiae_contig7767:8220..83401691683868.327195-CDS-L-elsbetiae_contig7767:8220..8340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7767 8221..8340 +
1622816860.8344848-CDS-L-elsbetiae_contig7767:8371..85171622816860.8344848-CDS-L-elsbetiae_contig7767:8371..8517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7767 8372..8517 +
1691683868.339542-CDS-L-elsbetiae_contig7767:8371..85171691683868.339542-CDS-L-elsbetiae_contig7767:8371..8517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7767 8372..8517 +
1622816860.8494394-CDS-L-elsbetiae_contig7767:8529..86111622816860.8494394-CDS-L-elsbetiae_contig7767:8529..8611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7767 8530..8611 +
1691683868.3490255-CDS-L-elsbetiae_contig7767:8529..86111691683868.3490255-CDS-L-elsbetiae_contig7767:8529..8611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7767 8530..8611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7767.16710.1

>prot_L-elsbetiae_contig7767.16710.1 ID=prot_L-elsbetiae_contig7767.16710.1|Name=mRNA_L-elsbetiae_contig7767.16710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MVTKLGSRLLEMISVRPISTLSVLSEGECSFTTWEVSTTTQQQQQQQQQQ
QRQQPPDMQTQHAVVSWRRENHAKTGQSRCRLREKIAARQAGRQAFGETR
VFRRPTRRRKRPIFGE
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mRNA from alignment at L-elsbetiae_contig7767:8211..8611+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7767.16710.1 ID=mRNA_L-elsbetiae_contig7767.16710.1|Name=mRNA_L-elsbetiae_contig7767.16710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=401bp|location=Sequence derived from alignment at L-elsbetiae_contig7767:8211..8611+ (Laminarionema elsbetiae ELsaHSoW15)
CACAGGCACGATGGTGACGAAGTTGGGGTCGAGGCTGTTGGAGATGATCT
CCGTTCGCCCGATCTCGACGCTCTCGGTGCTCTCTGAGGGGGAGTGCAGC
TTCACCACCTGGGAAGTATCAACAACAACAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAA
CAACCACCGGACATGCAGACACAACATGCGGTCGTCAGCTGGAGGAGGGA
AAATCATGCGAAGACAGGCCAGTCTCGATGCCGCCTGCGAGAAAAAATCG
CGGCAAGGCATGCAGGCAGGCAGGCAGGCAGGCAGGCTTTCGGGGAGACG
CGGGTTTTTCGGCGTCCAACACGTCGCCGGAAAAGGCCGATCTTCGGAGA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7767:8211..8611+

>mRNA_L-elsbetiae_contig7767.16710.1 ID=mRNA_L-elsbetiae_contig7767.16710.1|Name=mRNA_L-elsbetiae_contig7767.16710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig7767:8211..8611+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGACGAAGTTGGGGTCGAGGCTGTTGGAGATGATCTCCGTTCGCCC
GATCTCGACGCTCTCGGTGCTCTCTGAGGGGGAGTGCAGCTTCACCACCT
GGGAAGTATCAACAACAACAATGGTGACGAAGTTGGGGTCGAGGCTGTTG
GAGATGATCTCCGTTCGCCCGATCTCGACGCTCTCGGTGCTCTCTGAGGG
GGAGTGCAGCTTCACCACCTGGGAAGTATCAACAACAACACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCGACAACAACCACCGGACATGCAGACA
CAACATGCGGTCGTCAGCTGGAGGAGGGAAAATCATGCGAAGACAGGCCA
GTCTCGATGCCGCCTGCGAGAAAAAATCGCGGCAAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCGACAACAACCACCGGACATGCAGACACAAC
ATGCGGTCGTCAGCTGGAGGAGGGAAAATCATGCGAAGACAGGCCAGTCT
CGATGCCGCCTGCGAGAAAAAATCGCGGCAAGGCAGGCAGGCAGGCAGGC
TTTCGGGGAGACGCGGGTTTTTCGGCGTCCAACACGTCGCCGGAAAAGGC
CGATCTTCGGAGAGGCAGGCAGGCAGGCAGGCTTTCGGGGAGACGCGGGT
TTTTCGGCGTCCAACACGTCGCCGGAAAAGGCCGATCTTCGGAGAG
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