mRNA_L-elsbetiae_contig7763.16706.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7763.16706.1
Unique NamemRNA_L-elsbetiae_contig7763.16706.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7763.16706.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.780e-15
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 VNEIYERYVPSSWAKPTPDADQHLREQWIMAKYKHR 108
            VNEIYERYVPSSW KPTPDADQ  REQW++AKYKHR
Sbjct:   71 VNEIYERYVPSSWTKPTPDADQQQREQWVLAKYKHR 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7763.16706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU92_ECTSI4.780e-1586.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7763contigL-elsbetiae_contig7763:1388..1522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue5.5e-12
Seed eggNOG ortholog2880.D8LU92
KEGG koko:K12486,ko:K20164
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5347@1,KOG0703@2759,KOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Ec32 ortholog descriptionuDENN domain
Ec32 orthologEc-14_004120.1
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.5271716-CDS-L-elsbetiae_contig7763:1387..15221622816860.5271716-CDS-L-elsbetiae_contig7763:1387..1522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7763 1388..1522 -
1691683868.1227841-CDS-L-elsbetiae_contig7763:1387..15221691683868.1227841-CDS-L-elsbetiae_contig7763:1387..1522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7763 1388..1522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7763.16706.1prot_L-elsbetiae_contig7763.16706.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7763 1388..1522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7763.16706.1

>prot_L-elsbetiae_contig7763.16706.1 ID=prot_L-elsbetiae_contig7763.16706.1|Name=mRNA_L-elsbetiae_contig7763.16706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
VNEIYERYVPSSWAKPTPDADQHLREQWIMAKYKHRCGGGVVQR*
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mRNA from alignment at L-elsbetiae_contig7763:1388..1522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7763.16706.1 ID=mRNA_L-elsbetiae_contig7763.16706.1|Name=mRNA_L-elsbetiae_contig7763.16706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=135bp|location=Sequence derived from alignment at L-elsbetiae_contig7763:1388..1522- (Laminarionema elsbetiae ELsaHSoW15)
GTGAACGAGATCTACGAGCGATACGTACCGAGCAGCTGGGCCAAGCCGAC
ACCTGACGCCGACCAGCACCTCAGGGAGCAGTGGATTATGGCCAAATACA
AGCACAGGTGCGGCGGCGGTGTGGTGCAGCGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7763:1388..1522-

>mRNA_L-elsbetiae_contig7763.16706.1 ID=mRNA_L-elsbetiae_contig7763.16706.1|Name=mRNA_L-elsbetiae_contig7763.16706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig7763:1388..1522- (Laminarionema elsbetiae ELsaHSoW15)
GTGAACGAGATCTACGAGCGATACGTACCGAGCAGCTGGGCCAAGCCGAC
ACCTGACGCCGACCAGCACCTCAGGGAGCAGTGGATTATGGCCAAATACA
AGCACAGGTGCGGCGGCGGTGTGGTGCAGCGGTGAGTGAACGAGATCTAC
GAGCGATACGTACCGAGCAGCTGGGCCAAGCCGACACCTGACGCCGACCA
GCACCTCAGGGAGCAGTGGATTATGGCCAAATACAAGCACAGGTGCGGCG
GCGGTGTGGTGCAGCGGTGA
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