mRNA_L-elsbetiae_contig7760.16704.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7760.16704.1
Unique NamemRNA_L-elsbetiae_contig7760.16704.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7760.16704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7760contigL-elsbetiae_contig7760:7511..9255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size455
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7760.16704.1prot_L-elsbetiae_contig7760.16704.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7760 7511..9064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.2373285-CDS-L-elsbetiae_contig7760:7510..76811622816860.2373285-CDS-L-elsbetiae_contig7760:7510..7681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7760 7511..7681 -
1691683867.8860495-CDS-L-elsbetiae_contig7760:7510..76811691683867.8860495-CDS-L-elsbetiae_contig7760:7510..7681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7760 7511..7681 -
1622816860.2512078-CDS-L-elsbetiae_contig7760:8971..90641622816860.2512078-CDS-L-elsbetiae_contig7760:8971..9064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7760 8972..9064 -
1691683867.8948734-CDS-L-elsbetiae_contig7760:8971..90641691683867.8948734-CDS-L-elsbetiae_contig7760:8971..9064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7760 8972..9064 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.261561-UTR-L-elsbetiae_contig7760:9064..92551622816860.261561-UTR-L-elsbetiae_contig7760:9064..9255Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7760 9065..9255 -
1691683867.9119673-UTR-L-elsbetiae_contig7760:9064..92551691683867.9119673-UTR-L-elsbetiae_contig7760:9064..9255Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7760 9065..9255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7760.16704.1

>prot_L-elsbetiae_contig7760.16704.1 ID=prot_L-elsbetiae_contig7760.16704.1|Name=mRNA_L-elsbetiae_contig7760.16704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
MPRLPTPMSLGRVPKYSLNRSALMETNQQGKEEKQKQQQQQQQYVINDEN
NRRLSNGSDATSITPSAGHGVDVGGSGTKPLTSPSPAS
back to top

mRNA from alignment at L-elsbetiae_contig7760:7511..9255-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7760.16704.1 ID=mRNA_L-elsbetiae_contig7760.16704.1|Name=mRNA_L-elsbetiae_contig7760.16704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1745bp|location=Sequence derived from alignment at L-elsbetiae_contig7760:7511..9255- (Laminarionema elsbetiae ELsaHSoW15)
AGCTTCAAGACACGGAAGAGCGTAAGAGACGAACAGTTTCAAGAACGTAC
AGCCACAGACAAGAAGCAAGATCGTGGCACCGTTCACGTTGACACACCAG
TCGAGCCTCTCTGAAATCGCCCACTCGGATCCTGCCGAGCAAGAGATTGA
CGGAGGGCTGCTCCACCAGCCGAGCCTGTTGGGGTACCCGTATGCCACGT
CTACCCACACCCATGTCTTTGGGAAGGGTGCCCAAGTACAGCCTTAACCG
ATCCGCGCTGATGGAGACCAACCAGCAGGGCAAGGTGAGATTGATTGCGT
TTGTTTGTACATGAGGCCACCTTCAGAGAGATTCAGAGAGTCGGTGTGGA
ATACATCACTTGTATCATACCGGCTTATCTGGGAACGAGCCGGTGTACTG
GTGCAAGCTGCTGTTGAACGCGATCAGGCGCATATAGCTCTGGAGCGCAT
GGACAGCAAGCGAAGAGGGCAACAAAACTGTCTTGTTGTGTGATGGTTCC
CACCCTTCATTAGTCGACTAGACCAACTACTAGTTAGATAGACTATAGTC
TGCCACTGCTGCTGCTGTAGTCTATCTAGACTATCTAGACTATCTATCTA
TCTATCTATCTATCTATCTACATACATATGTGCCTAGCGACTTGTCAGCG
GGGCTATTTTGTAAGAATAGTAGATTATTAGATGGCCCTCTCGTCTATAC
ACAGCCCGGGCTTTTTGCGTGTAGAGCAAGCCGTAGTCTATATCTATCTA
TCTACACAAAGTTGACCCGAGGTTGTCAGGAGAGGAGACGTTGTCCGACA
GAGTATCTAGACACTACTGTAGTCTAGGTTTGTGTTGGACTCGACCGAAC
TCAGGAGTAAACGGCGATGAGTTTGGTTCCACATCTGTCGCGCCCACATT
CAAATCCGATGATGTTGTAAAATAAACCTAAAGCCGTATGTATGCGAGCT
GCGAGCACACCCTAGACCATGTATTGACGGAACACACCAAAAAGTGAGGT
ACATGGCGGAGACCCCGATGCCCACGAGGAGGGTTTGGCAAGACTCATCA
CGGGCAAGATCGTTCTGTTTCAGCGAAATCCCCACATCCTCTTTCTGCCC
TCCAGAAACATATGGACCGATGATGAAGAAGAGGGGCAATGATGACTCCT
TTTTGTCTACTTTCTTGCCGAAAGCATGTTGTTGTTTGACACCTCATCAA
CGACGCTCGCTCCCTGGGGCGCGGTCCAAAAATAGAAAATATTTCGACGA
CCTGCCGGCTTGCTTTAGCGAGTCCCCGACAACGAAGGGCATGCTTCCTT
ACTGGCGGATCGTCTGGGGGCTTACCTCTGGCGATATATACGGAATGATG
TGTTGGTTTGATCTGTATTACATGCGTCGGCTGCCACAGGTCTGTGCTTC
AACACACACCTTTCTTTCAAACGATGAGATTAATACACATATATTGTACA
CATCACCAATATTGTAGCCCTCCATCAGCTGACCCAGTTAAGTGTTGTTC
AAGTCCATCACATGGTGCCCGTCTTTGCCCCCGCCCCGCCACCCCCACGA
ATTCCAATCCACCAACAACATCAGGAAGAAAAGCAAAAACAACAACAACA
GCAGCAACAGTATGTCATCAACGACGAAAATAACCGCCGCCTCTCCAACG
GTAGCGATGCCACGTCCATCACACCATCCGCCGGCCATGGAGTCGACGTT
GGCGGCAGCGGCACCAAGCCCCTGACTTCACCATCACCAGCATCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7760:7511..9255-

>mRNA_L-elsbetiae_contig7760.16704.1 ID=mRNA_L-elsbetiae_contig7760.16704.1|Name=mRNA_L-elsbetiae_contig7760.16704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig7760:7511..9255- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACGTCTACCCACACCCATGTCTTTGGGAAGGGTGCCCAAGTACAG
CCTTAACCGATCCGCGCTGATGGAGACCAACCAGCAGGGCAAGATGCCAC
GTCTACCCACACCCATGTCTTTGGGAAGGGTGCCCAAGTACAGCCTTAAC
CGATCCGCGCTGATGGAGACCAACCAGCAGGGCAAGGAAGAAAAGCAAAA
ACAACAACAACAGCAGCAACAGTATGTCATCAACGACGAAAATAACCGCC
GCCTCTCCAACGGTAGCGATGCCACGTCCATCACACCATCCGCCGGCCAT
GGAGTCGACGTTGGCGGCAGCGGCACCAAGCCCCTGACTTCACCATCACC
AGCATCCGAAGAAAAGCAAAAACAACAACAACAGCAGCAACAGTATGTCA
TCAACGACGAAAATAACCGCCGCCTCTCCAACGGTAGCGATGCCACGTCC
ATCACACCATCCGCCGGCCATGGAGTCGACGTTGGCGGCAGCGGCACCAA
GCCCCTGACTTCACCATCACCAGCATCC
back to top