mRNA_L-elsbetiae_contig776.16702.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig776.16702.1
Unique NamemRNA_L-elsbetiae_contig776.16702.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig776.16702.1 vs. uniprot
Match: D8LMN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN2_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.660e-40
Identity = 84/114 (73.68%), Postives = 94/114 (82.46%), Query Frame = 1 
Query:  151 QEAKMALQ-VVTVGKSVPPTSREEALTKFAHAVFDRLFEMARGKEGNPAAVTLLRVEVYATVLELCLCTIKMSRTAGRNKKDLSTQWYTRLPLQVIVGPGSRMLHLGALNYLVQ 489
            QE   ALQ +VTVGKSVP ++RE+ALTKFA AVF+RLFEMARGKE NPAAV LLRVEVYA VLELCL T++ S  +GRNK+DL TQWYT LP Q I+GPGSR LHL AL YLVQ
Sbjct:  618 QELSAALQEIVTVGKSVPLSAREDALTKFARAVFNRLFEMARGKEDNPAAVPLLRVEVYAAVLELCLRTVRTSLVSGRNKEDLLTQWYTGLPPQAIIGPGSRKLHLAALKYLVQ 731
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BLAST of mRNA_L-elsbetiae_contig776.16702.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.880e-40
Identity = 84/114 (73.68%), Postives = 94/114 (82.46%), Query Frame = 1 
Query:  151 QEAKMALQ-VVTVGKSVPPTSREEALTKFAHAVFDRLFEMARGKEGNPAAVTLLRVEVYATVLELCLCTIKMSRTAGRNKKDLSTQWYTRLPLQVIVGPGSRMLHLGALNYLVQ 489
            QE   ALQ +VTVGKSVP ++RE+ALTKFA AVF+RLFEMARGKE NPAAV LLRVEVYA VLELCL T++ S  +GRNK+DL TQWYT LP Q I+GPGSR LHL AL YLVQ
Sbjct: 2053 QELSAALQEIVTVGKSVPLSAREDALTKFARAVFNRLFEMARGKEDNPAAVPLLRVEVYAAVLELCLRTVRTSLVSGRNKEDLLTQWYTGLPPQAIIGPGSRKLHLAALKYLVQ 2166
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BLAST of mRNA_L-elsbetiae_contig776.16702.1 vs. uniprot
Match: A0A835ZHM2_9STRA (CCR4-Not complex component, Not1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.120e-6
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  172 QVVTVGKSVPPTSREEALTKFAHAVFDRLFEMARGKEGNPAAVTLLRVE 318
            +VV VG+ VP   REEALT FA  VF RLF+MARGKE + A V LLRVE
Sbjct: 1788 EVVVVGQRVPAERREEALTLFAQGVFQRLFDMARGKEDSAADVPLLRVE 1836
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig776.16702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMN2_ECTSI1.660e-4073.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXN6_9PHAE1.880e-4073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHM2_9STRA1.120e-665.31CCR4-Not complex component, Not1-domain-containing... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig776contigL-elsbetiae_contig776:165..2876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
EggNOG OGsCOG5103@1,KOG1831@2759
COG Functional cat.DK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons4
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue4.9e-37
Seed eggNOG ortholog2880.D8LMN2
KEGG koko:K12604
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032774,GO:0032947,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Model size997
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig776.16702.1prot_L-elsbetiae_contig776.16702.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig776 490..2240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.1494145-UTR-L-elsbetiae_contig776:164..4891622816860.1494145-UTR-L-elsbetiae_contig776:164..489Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig776 165..489 -
1691683867.8269744-UTR-L-elsbetiae_contig776:164..4891691683867.8269744-UTR-L-elsbetiae_contig776:164..489Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig776 165..489 -
1622816860.1946461-UTR-L-elsbetiae_contig776:2240..22461622816860.1946461-UTR-L-elsbetiae_contig776:2240..2246Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig776 2241..2246 -
1691683867.8694558-UTR-L-elsbetiae_contig776:2240..22461691683867.8694558-UTR-L-elsbetiae_contig776:2240..2246Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig776 2241..2246 -
1622816860.2083182-UTR-L-elsbetiae_contig776:2720..28761622816860.2083182-UTR-L-elsbetiae_contig776:2720..2876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig776 2721..2876 -
1691683867.877601-UTR-L-elsbetiae_contig776:2720..28761691683867.877601-UTR-L-elsbetiae_contig776:2720..2876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig776 2721..2876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.1612005-CDS-L-elsbetiae_contig776:489..6721622816860.1612005-CDS-L-elsbetiae_contig776:489..672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig776 490..672 -
1691683867.8388433-CDS-L-elsbetiae_contig776:489..6721691683867.8388433-CDS-L-elsbetiae_contig776:489..672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig776 490..672 -
1622816860.1741645-CDS-L-elsbetiae_contig776:1512..16831622816860.1741645-CDS-L-elsbetiae_contig776:1512..1683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig776 1513..1683 -
1691683867.850042-CDS-L-elsbetiae_contig776:1512..16831691683867.850042-CDS-L-elsbetiae_contig776:1512..1683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig776 1513..1683 -
1622816860.1844578-CDS-L-elsbetiae_contig776:2084..22401622816860.1844578-CDS-L-elsbetiae_contig776:2084..2240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig776 2085..2240 -
1691683867.861296-CDS-L-elsbetiae_contig776:2084..22401691683867.861296-CDS-L-elsbetiae_contig776:2084..2240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig776 2085..2240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig776.16702.1

>prot_L-elsbetiae_contig776.16702.1 ID=prot_L-elsbetiae_contig776.16702.1|Name=mRNA_L-elsbetiae_contig776.16702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MALQVVTVGKSVPPTSREEALTKFAHAVFDRLFEMARGKEGNPAAVTLLR
VEVYATVLELCLCTIKMSRTAGRNKKDLSTQWYTRLPLQVIVGPGSRMLH
LGALNYLVQAHAPETRFPTENSLATPPPPTPPPYRVFMAVALSVCCLWVW
RVVGVVVTFFCQGSMRQRD*
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mRNA from alignment at L-elsbetiae_contig776:165..2876-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig776.16702.1 ID=mRNA_L-elsbetiae_contig776.16702.1|Name=mRNA_L-elsbetiae_contig776.16702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2712bp|location=Sequence derived from alignment at L-elsbetiae_contig776:165..2876- (Laminarionema elsbetiae ELsaHSoW15)
CACGTTGTAGCAGGCGCTGTTGGCGTGGCAGGGCGCGATCGGGCTTCTGG
AGCAGGCGACGATCTGCGGGCTGCTGACCGCGTAGAGACGGCCGGCCGGG
CGGCCGGGGTCGGCTGCGAACCGGGAACAGGAGCTCTCGGCGGCGCGCTG
CAAGAGGTGAGCGCGGAGTGGTGTACGTATGCATGTACAGGGTTGATAAG
GGGAAGGCTCTAGGCAAATATGGGCCCCGTTTTGTTTGTTGCGGCCGAGG
TCGGGGAGAGTAGGGCATGGGGTCGCCTTGGGTGACCTTGCGTGGGGTTT
TGTTTCAGCTGTGTGCGGGGCGGCATTCGCTGTGCTGCTAGTGCTATCTG
TGTGTCTTTATTTGTTTATTTTTAAGGGTAGTTGGATTTGTTCTTCTGCT
TTGTTGGTGCCGATGGCAAGAGGACGATGCTCTTGACGTCGTTTTTGCCA
CGGGAGTTTGCGGATGCTGCACGAGGAGCAAGGTCACGCTCACAAATCAA
AGCATGTCATCTATCTAGCGTATCTACGACGCGAGATCTCGATTGACTCT
GGTCCCCCCCCCATGCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCC
TCCCTCCCTTGCCTTCTCTTCCCTGGGCAGGCGAAAATGGCGTTGCAGGT
CGTAACGGTCGGCAAGAGCGTCCCGCCAACCTCGCGCGAAGAAGCGCTCA
CCAAGTTCGCCCACGCGGTGTTCGACCGTCTGTTCGAGATGGCCCGCGGA
AAGGAGGGCAACCCGGCGGCGGTGACGTTGCTTCGAGTGGAGGTGAGAAA
GGCACGGAGAGAGGGTCGGGGGGGGGAAGGGGGCAAAGAGAGAGTGAGCC
AGAGAGAAGGAGGGAGGGGGGAGAGATAGAGAGAGACTAACGCCAGAGAG
TGAGGTAGGGAGTAGGAGAGAGGGGCTGTGGTCACCTGCATGTTGCCTTG
TAGCGTGGGTCGCGCTTGTGGGTGTATATCGGTAGGAGAAATAGTTGAGG
AAGCAGAAAGAAGAAAGCAGAGAGAAATCATCCAGATACATACGTGTACT
TTTTTTTTTTCTTCTCAGACACGCACTTAGATCTCCACACCCGCTACACC
CCCCATGCACCTCATGGATTTGGCCTTTGTCTGGAATCAGCCGGCTCACT
CCGAGGTCTCCCTCCATCCCCCCACGTTTGTTTTGTTGTTCAGGTGTACG
CCACCGTGCTGGAGCTGTGCCTTTGCACCATCAAGATGTCGCGTACCGCC
GGCCGCAACAAGAAGGACCTATCGACGCAGTGGTACACCAGGCTACCCCT
GCAGGTGATCGTCGGGCCGGGGTCGAGGATGCTCCATCTTGGCGCCCTCA
ATTATCTCGTGCAGGTGCGTTGTGTTGCTCGTCTGTTGTTGTTGTTGTTG
TTGCTGCTGCTGCTGGCGTTGTGTTTGTTGTTGTCGATCTTCCTCGGGTT
TGTGTGTTTTGGCCACGCCCGCCGAACCCAGCATCCTTGGCCTGCCCGCT
TGCTTTTTCTCTCCCTTCCCCCTAACCCACCCAACCTATCATCCACCCAA
CCAACAGCTTCCATCAAGTAGTGTCTGCGTGTGTGTGTGTGTGTGTGTGT
GGGTGTGTGTGTTTTCTGTCTTGCGAGAGTAGGTTGGGCTGCATAGCCGA
GCAACACAAACAGGCCTCGCTTGCTGCCCGCGGCGATCAGTTTTTGGGCA
CAGCAGTATCGCATCATATTGCCGTGGCGCCTCTCGCTGGGTCTGGTACT
TGTAAAGTCTAGTCAGACTATTTGAGGTTTTCGTTTGTTCTCCGGTTTTT
TGGTTTTGAAAGCCACGGATTGTGCTTGGCGTTCTCATTCATCGATACTT
GCAATGCAAGCATCAAGACCCCACCCTCGCTGTGTGTATGCACCATAAAT
CTATATATAGTTACTTTGTTTTTCTCACGTGTGTGTCCGATTTTTTACGT
TTATTTCCTTGGCCGCATTACTGAACGAGCGACTGGTCGTGCGGGCCATC
TTTGGGGTGCTAACGCGCATGTGCAATTGAGAAAATGTATCGCTGTGTGC
TTAGACTACATAGACCCAGAGCAGGTCTGAAATTCGTTTTGCCTCATGAG
CTGTTTTTGCTCTAAACTCTAAATTTGAAACCACTGATACAGTAAGTACC
CTCTCCGCCTGCCTGCCCCGCCCGCTGCCTGCCCCGCTCCCCGCCCTGCT
GAAGGCTCACGCGCCCGAGACACGTTTCCCCACCGAGAACTCTCTTGCCA
CACCACCACCACCGACGCCACCACCATACCGTGTATTTATGGCTGTGGCG
CTTTCTGTTTGTTGCCTTTGGGTGTGGCGTGTTGTTGGTGTTGTCGTTAC
ATTTTTTTGTCAAGGCAGCATGCGTCAAAGAGACTGAGCATTCGGTTGAA
CTTTTTGAATGATCCTGGGAGAGACCAAGAGCGATCCAGGCATGTCTTTA
GCCCCCTCCGGATGTGAATTTTCAGACAATCTCAACGATTGTGTTTACAA
CCACCCGACCCTCTTTGCGTTTTGACGCGAAAACAGGGATCCGGTACTGT
TAACGCAGGATGTCCGTCGACGACCATATGCTAGTCTATGTTTGTTCTTG
CCTCGCTTTTTTTATTGCGTGTTGATCATGAGCTTCAAAACGCTTTTTAG
CGAAATGTTCTCATCTGATTGATGGATGGGGAAGGCTGTGCTGGCTGTTT
GGTTAAAAGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig776:165..2876-

>mRNA_L-elsbetiae_contig776.16702.1 ID=mRNA_L-elsbetiae_contig776.16702.1|Name=mRNA_L-elsbetiae_contig776.16702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig776:165..2876- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTGCAGGTCGTAACGGTCGGCAAGAGCGTCCCGCCAACCTCGCG
CGAAGAAGCGCTCACCAAGTTCGCCCACGCGGTGTTCGACCGTCTGTTCG
AGATGGCCCGCGGAAAGGAGGGCAACCCGGCGGCGGTGACGTTGCTTCGA
GTGGAGATGGCGTTGCAGGTCGTAACGGTCGGCAAGAGCGTCCCGCCAAC
CTCGCGCGAAGAAGCGCTCACCAAGTTCGCCCACGCGGTGTTCGACCGTC
TGTTCGAGATGGCCCGCGGAAAGGAGGGCAACCCGGCGGCGGTGACGTTG
CTTCGAGTGGAGGTGTACGCCACCGTGCTGGAGCTGTGCCTTTGCACCAT
CAAGATGTCGCGTACCGCCGGCCGCAACAAGAAGGACCTATCGACGCAGT
GGTACACCAGGCTACCCCTGCAGGTGATCGTCGGGCCGGGGTCGAGGATG
CTCCATCTTGGCGCCCTCAATTATCTCGTGCAGGTGTACGCCACCGTGCT
GGAGCTGTGCCTTTGCACCATCAAGATGTCGCGTACCGCCGGCCGCAACA
AGAAGGACCTATCGACGCAGTGGTACACCAGGCTACCCCTGCAGGTGATC
GTCGGGCCGGGGTCGAGGATGCTCCATCTTGGCGCCCTCAATTATCTCGT
GCAGGCTCACGCGCCCGAGACACGTTTCCCCACCGAGAACTCTCTTGCCA
CACCACCACCACCGACGCCACCACCATACCGTGTATTTATGGCTGTGGCG
CTTTCTGTTTGTTGCCTTTGGGTGTGGCGTGTTGTTGGTGTTGTCGTTAC
ATTTTTTTGTCAAGGCAGCATGCGTCAAAGAGACTGAGCTCACGCGCCCG
AGACACGTTTCCCCACCGAGAACTCTCTTGCCACACCACCACCACCGACG
CCACCACCATACCGTGTATTTATGGCTGTGGCGCTTTCTGTTTGTTGCCT
TTGGGTGTGGCGTGTTGTTGGTGTTGTCGTTACATTTTTTTGTCAAGGCA
GCATGCGTCAAAGAGACTGA
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