mRNA_L-elsbetiae_contig7743.16686.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7743.16686.1
Unique NamemRNA_L-elsbetiae_contig7743.16686.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7743.16686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7743contigL-elsbetiae_contig7743:7498..8658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size784
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7743.16686.1prot_L-elsbetiae_contig7743.16686.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7743 7498..8417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.078958-CDS-L-elsbetiae_contig7743:7497..76891622816859.078958-CDS-L-elsbetiae_contig7743:7497..7689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7743 7498..7689 -
1691683867.044082-CDS-L-elsbetiae_contig7743:7497..76891691683867.044082-CDS-L-elsbetiae_contig7743:7497..7689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7743 7498..7689 -
1622816859.0927775-CDS-L-elsbetiae_contig7743:8066..84171622816859.0927775-CDS-L-elsbetiae_contig7743:8066..8417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7743 8067..8417 -
1691683867.0578454-CDS-L-elsbetiae_contig7743:8066..84171691683867.0578454-CDS-L-elsbetiae_contig7743:8066..8417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7743 8067..8417 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.105485-UTR-L-elsbetiae_contig7743:8417..86581622816859.105485-UTR-L-elsbetiae_contig7743:8417..8658Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7743 8418..8658 -
1691683867.066718-UTR-L-elsbetiae_contig7743:8417..86581691683867.066718-UTR-L-elsbetiae_contig7743:8417..8658Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7743 8418..8658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7743.16686.1

>prot_L-elsbetiae_contig7743.16686.1 ID=prot_L-elsbetiae_contig7743.16686.1|Name=mRNA_L-elsbetiae_contig7743.16686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MASRTGAWCRRSGPCPVPVTPVGIETQPGHANGTSLDAHHPSLRMGASLV
TATSRASRYIRGSVGGPWGNGGFGAGSLDTWQTFGARGNVCSASRCVQRA
RAWHDLQMGVAQLPSFQGSSQGVHVLAGCPGRLSWPVTQGTAETLLAEKQ
KKRKKKKENKRENKWRKKRNVGGTKKRKDT*
back to top

mRNA from alignment at L-elsbetiae_contig7743:7498..8658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7743.16686.1 ID=mRNA_L-elsbetiae_contig7743.16686.1|Name=mRNA_L-elsbetiae_contig7743.16686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1161bp|location=Sequence derived from alignment at L-elsbetiae_contig7743:7498..8658- (Laminarionema elsbetiae ELsaHSoW15)
CGTGGGCACCAGCGCCGACGCCGTGGGCGGGATGCTCACGCTGACGGCCG
GCACGGGCGTGACGGGCGGTCCTGTGTCGATGGCCGCAGGCACCGGCACC
ACCTCGACGGGCGGGGCCGTGAGTCTGGCGGCGGGCAAGGGACATGCCGG
TGGAGCCTTCGCCGTCAAGGCTTGGGAGGGAGCGTCGCCATGGTGCTGAG
CTCGGGCACCTCCAGCTCCGGCAACGGGCGGTCCTGTGTCGATGGCCTCA
AGAACGGGGGCGTGGTGTCGGCGGTCGGGGCCTTGTCCCGTCCCAGTAAC
GCCGGTGGGCATTGAAACCCAACCTGGACACGCTAACGGTACTTCTCTAG
ACGCACACCACCCTTCCTTGAGGATGGGAGCGTCATTGGTAACTGCTACA
AGTCGGGCTTCGAGGTATATTCGCGGCAGTGTTGGCGGGCCGTGGGGCAA
CGGTGGGTTTGGAGCTGGGAGTCTCGATACTTGGCAAACCTTCGGAGCCC
GCGGGAACGTCTGCTCCGCGAGTCGCTGTGTACAGCGCGCTCGGGCATGG
CATGATCTGCAGATGGGCGTGGCACAGCTTCCCAGCTTTCAGGTATGTCG
TGTGGGCAGCGGGGTGTCTGATTGGGGAATGGAATTAGCTGTTCATCCCC
GGGTCCGATGTGCGTGACACATGCAGTATGGGTGAGGCGGAAGGAAGAAA
TAAAACTCTTTTGGATTTTTATTGCGAGGCACGCCGTTTTCCAGTCCTCG
TGCGAAGGAAAAGGTAAAATACGCTGAGTTGTCCGTTAGAAATTCTTGTT
ATTTATGCTCGAAACATTTACAAACATGTGTGCCTCGTTGTTCCCGTGAA
GATATTAGTAGTACTTGGAAGAACGAGGCTATTCATACGTAGTTGCTGAT
TTTTCCCTCTATGTACCCGTGCAACTGCAAACGTTCGGCCGCGACGGTGC
CACTCCATTATTTCTATAGGGATCTTCCCAGGGCGTGCATGTCCTGGCCG
GTTGTCCTGGCCGGTTGTCCTGGCCGGTCACGCAAGGTACCGCTGAAACG
TTGCTGGCCGAGAAGCAGAAAAAAAGAAAGAAAAAAAAAGAAAACAAAAG
AGAAAACAAATGGCGTAAAAAAAGAAATGTAGGGGGCACAAAAAAAAGAA
AAGACACATAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7743:7498..8658-

>mRNA_L-elsbetiae_contig7743.16686.1 ID=mRNA_L-elsbetiae_contig7743.16686.1|Name=mRNA_L-elsbetiae_contig7743.16686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig7743:7498..8658- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTCAAGAACGGGGGCGTGGTGTCGGCGGTCGGGGCCTTGTCCCGT
CCCAGTAACGCCGGTGGGCATTGAAACCCAACCTGGACACGCTAACGGTA
CTTCTCTAGACGCACACCACCCTTCCTTGAGGATGGGAGCGTCATTGGTA
ACTGCTACAAGTCGGGCTTCGAGGTATATTCGCGGCAGTGTTGGCGGGCC
GTGGGGCAACGGTGGGTTTGGAGCTGGGAGTCTCGATACTTGGCAAACCT
TCGGAGCCCGCGGGAACGTCTGCTCCGCGAGTCGCTGTGTACAGCGCGCT
CGGGCATGGCATGATCTGCAGATGGGCGTGGCACAGCTTCCCAGCTTTCA
GATGGCCTCAAGAACGGGGGCGTGGTGTCGGCGGTCGGGGCCTTGTCCCG
TCCCAGTAACGCCGGTGGGCATTGAAACCCAACCTGGACACGCTAACGGT
ACTTCTCTAGACGCACACCACCCTTCCTTGAGGATGGGAGCGTCATTGGT
AACTGCTACAAGTCGGGCTTCGAGGTATATTCGCGGCAGTGTTGGCGGGC
CGTGGGGCAACGGTGGGTTTGGAGCTGGGAGTCTCGATACTTGGCAAACC
TTCGGAGCCCGCGGGAACGTCTGCTCCGCGAGTCGCTGTGTACAGCGCGC
TCGGGCATGGCATGATCTGCAGATGGGCGTGGCACAGCTTCCCAGCTTTC
AGGGATCTTCCCAGGGCGTGCATGTCCTGGCCGGTTGTCCTGGCCGGTTG
TCCTGGCCGGTCACGCAAGGTACCGCTGAAACGTTGCTGGCCGAGAAGCA
GAAAAAAAGAAAGAAAAAAAAAGAAAACAAAAGAGAAAACAAATGGCGTA
AAAAAAGAAATGTAGGGGGCACAAAAAAAAGAAAAGACACATAAGGATCT
TCCCAGGGCGTGCATGTCCTGGCCGGTTGTCCTGGCCGGTTGTCCTGGCC
GGTCACGCAAGGTACCGCTGAAACGTTGCTGGCCGAGAAGCAGAAAAAAA
GAAAGAAAAAAAAAGAAAACAAAAGAGAAAACAAATGGCGTAAAAAAAGA
AATGTAGGGGGCACAAAAAAAAGAAAAGACACATAA
back to top