mRNA_L-elsbetiae_contig7741.16685.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7741.16685.1
Unique NamemRNA_L-elsbetiae_contig7741.16685.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7741.16685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7741contigL-elsbetiae_contig7741:8632..9501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size392
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.0371287-CDS-L-elsbetiae_contig7741:8631..89911622816859.0371287-CDS-L-elsbetiae_contig7741:8631..8991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7741 8632..8991 +
1691683867.0197241-CDS-L-elsbetiae_contig7741:8631..89911691683867.0197241-CDS-L-elsbetiae_contig7741:8631..8991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7741 8632..8991 +
1622816859.048292-CDS-L-elsbetiae_contig7741:9471..95011622816859.048292-CDS-L-elsbetiae_contig7741:9471..9501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7741 9472..9501 +
1691683867.0330126-CDS-L-elsbetiae_contig7741:9471..95011691683867.0330126-CDS-L-elsbetiae_contig7741:9471..9501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7741 9472..9501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7741.16685.1prot_L-elsbetiae_contig7741.16685.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7741 8632..9501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7741.16685.1

>prot_L-elsbetiae_contig7741.16685.1 ID=prot_L-elsbetiae_contig7741.16685.1|Name=mRNA_L-elsbetiae_contig7741.16685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
SSSGFSSERDDDEVEDDGGMDFLQRLDGPLHDPRTSAAATAAAVGDRAPS
TNAHLPFFVGLHSDTTTTASTSTATSLRNAPSASIATSGGGVMFNPLLPG
GGGDGGGGSQQGTGGGYMMPFDSGGSSDSG
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mRNA from alignment at L-elsbetiae_contig7741:8632..9501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7741.16685.1 ID=mRNA_L-elsbetiae_contig7741.16685.1|Name=mRNA_L-elsbetiae_contig7741.16685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig7741:8632..9501+ (Laminarionema elsbetiae ELsaHSoW15)
TCATCGAGTGGCTTCTCCTCCGAGCGCGATGACGACGAAGTCGAGGATGA
CGGCGGGATGGACTTCCTGCAACGCCTCGACGGGCCCCTGCATGATCCTC
GGACCTCGGCTGCTGCTACTGCTGCAGCCGTGGGGGATCGTGCGCCCAGC
ACGAACGCCCACCTTCCGTTCTTCGTCGGACTTCACTCGGACACCACTAC
TACTGCCAGCACCAGCACGGCCACAAGCCTCAGGAACGCCCCGAGCGCCA
GCATTGCTACGAGCGGTGGTGGAGTCATGTTCAACCCCCTTCTCCCCGGC
GGTGGCGGTGACGGTGGCGGGGGTAGCCAGCAGGGCACCGGCGGTGGCTA
CATGATGCCAGTAAGAGATTCAGAGATGTTCGACTTTGGCTTGCCGTGCC
CAACCTCTGTAGTGGACAGGCCCGACGCCCGAGTCTTCTGACATTCCTGC
AAACGACATTGTGCATCTGTGTCAGTCGAACGGGATATCTGTCTTGGCGT
ACGTGTGGTGCAGGCCAGAGGGTACAAGCGCCGCCGGCCCCAGGACGGTG
GCGACTGCTTGTAAGCAAGAGGCCACATGTTCCAAGCGTGTCTCCTCGCC
ACGGCGTGAAAAATTCCGTACGTACAGTACTTACATATGCGTGGAACTTA
AGGGGAAGTTGTTCACGACCCATGGCTCCGTGGCGTCTACCCTGATTTCG
CCGAAGCTAAAGTACGCGCCCATTTTGTTGAGAAGATGGCTTTCCTGTGC
TGTCACAGCTACGGCATTCTGGGCAGCGGAAGCAAGAGGCTGACTTGCCC
CCGGTTTTCCTTCCGTTTGTTGCCATCCCCTTTCTTGTAGTTCGATTCGG
GCGGCAGCAGCGACAGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7741:8632..9501+

>mRNA_L-elsbetiae_contig7741.16685.1 ID=mRNA_L-elsbetiae_contig7741.16685.1|Name=mRNA_L-elsbetiae_contig7741.16685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig7741:8632..9501+ (Laminarionema elsbetiae ELsaHSoW15)
TCATCGAGTGGCTTCTCCTCCGAGCGCGATGACGACGAAGTCGAGGATGA
CGGCGGGATGGACTTCCTGCAACGCCTCGACGGGCCCCTGCATGATCCTC
GGACCTCGGCTGCTGCTACTGCTGCAGCCGTGGGGGATCGTGCGCCCAGC
ACGAACGCCCACCTTCCGTTCTTCGTCGGACTTCACTCGGACACCACTAC
TACTGCCAGCACCAGCACGGCCACAAGCCTCAGGAACGCCCCGAGCGCCA
GCATTGCTACGAGCGGTGGTGGAGTCATGTTCAACCCCCTTCTCCCCGGC
GGTGGCGGTGACGGTGGCGGGGGTAGCCAGCAGGGCACCGGCGGTGGCTA
CATGATGCCATCATCGAGTGGCTTCTCCTCCGAGCGCGATGACGACGAAG
TCGAGGATGACGGCGGGATGGACTTCCTGCAACGCCTCGACGGGCCCCTG
CATGATCCTCGGACCTCGGCTGCTGCTACTGCTGCAGCCGTGGGGGATCG
TGCGCCCAGCACGAACGCCCACCTTCCGTTCTTCGTCGGACTTCACTCGG
ACACCACTACTACTGCCAGCACCAGCACGGCCACAAGCCTCAGGAACGCC
CCGAGCGCCAGCATTGCTACGAGCGGTGGTGGAGTCATGTTCAACCCCCT
TCTCCCCGGCGGTGGCGGTGACGGTGGCGGGGGTAGCCAGCAGGGCACCG
GCGGTGGCTACATGATGCCATTCGATTCGGGCGGCAGCAGCGACAGCGGG
TTCGATTCGGGCGGCAGCAGCGACAGCGGG
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