mRNA_L-elsbetiae_contig7732.16681.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7732.16681.1
Unique NamemRNA_L-elsbetiae_contig7732.16681.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7732.16681.1 vs. uniprot
Match: D7FQA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA2_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 2.410e-111
Identity = 238/398 (59.80%), Postives = 280/398 (70.35%), Query Frame = 1
Query:    1 CMSAFETAIEGDLNTQLDAQTEQCAQRWSEEKEKTEAAHAGLVELEELTVARLEGLGQVLKDRQGTVLAALKHEREANTRKILASALSDPLEEGQLLFERQVEETQLEGRRKQRRRLLDLSEQGVQVRQDEIEAALLKAARDQVENLMQVVDKMQTQQTRLLVALQAEKKKVSMMRQHVSNRLGTPSQKEARAAANAAKQETLQSHGKKSTAAKRGKIAALAVEAAATFGKTTANVAEVEDDASEEVDGEHNDNSLGGERDQLSGAELLDVCNFLEDDNLGLRQRLAKLELQRMQKEHGEDDEEPND-DSQLALVLEAKSELQGQLKGLQMANEERSKELERAQG-------VTPGPPAATAIVEATKTVTPEP-ENVYATGNATTDEFKADIEAEAS 1167
            CM AF  A+EGDL+T+LD  T+QC +R  EEKEKTEAA AGLVELEE TVARLE LG+VLKDRQ TVL ALKHEREANTRKILAS L DPLEEG+ LF +QVEET+LEG+ KQRRRLLDL+ QGV V+Q+EIEAA+LKA+RD+V+NLMQVVDKMQ QQT+LLV LQAEKK +S MRQHVS RLG     E+ AA     +E   S G K  A+K+GK AALAV AA T       + +         DG+  D        QLSG ELL  C  LE+ N+ LRQRLAKLELQ MQKEHG D++E N  DS+L  VLE K EL+G+L+GLQMANEERSKELER +G        + GP  A + +  T T TP P +   A GN + D+F A IEAE +
Sbjct:  123 CMVAFNKAVEGDLDTRLDTMTQQCTERHIEEKEKTEAAQAGLVELEEQTVARLEALGKVLKDRQETVLVALKHEREANTRKILASTLGDPLEEGRKLFNKQVEETELEGKLKQRRRLLDLNSQGVSVQQEEIEAAMLKASRDEVDNLMQVVDKMQNQQTKLLVTLQAEKKNISAMRQHVSKRLGASVDNESIAAT--PPREGGPSGGIKRHASKKGKTAALAVTAAFTMSNPGEGILD---------DGDSLDVIS-----QLSGIELLHACERLENHNVTLRQRLAKLELQTMQKEHGGDEDELNKTDSRLPRVLETKKELEGKLEGLQMANEERSKELERIRGGGDVPTTKSAGPTTAMSSIPTT-TETPGPVKRPDANGNGS-DDFMATIEAETT 502          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7732.16681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQA2_ECTSI2.410e-11159.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7732contigL-elsbetiae_contig7732:5026..8904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1188
Cds size1185
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816858.7540483-CDS-L-elsbetiae_contig7732:5025..52741622816858.7540483-CDS-L-elsbetiae_contig7732:5025..5274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 5026..5274 -
1691683866.7974057-CDS-L-elsbetiae_contig7732:5025..52741691683866.7974057-CDS-L-elsbetiae_contig7732:5025..5274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 5026..5274 -
1622816858.766516-CDS-L-elsbetiae_contig7732:5983..64001622816858.766516-CDS-L-elsbetiae_contig7732:5983..6400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 5984..6400 -
1691683866.8076816-CDS-L-elsbetiae_contig7732:5983..64001691683866.8076816-CDS-L-elsbetiae_contig7732:5983..6400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 5984..6400 -
1622816858.7783723-CDS-L-elsbetiae_contig7732:6640..67751622816858.7783723-CDS-L-elsbetiae_contig7732:6640..6775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 6641..6775 -
1691683866.817021-CDS-L-elsbetiae_contig7732:6640..67751691683866.817021-CDS-L-elsbetiae_contig7732:6640..6775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 6641..6775 -
1622816858.7908368-CDS-L-elsbetiae_contig7732:7236..73951622816858.7908368-CDS-L-elsbetiae_contig7732:7236..7395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 7237..7395 -
1691683866.8269067-CDS-L-elsbetiae_contig7732:7236..73951691683866.8269067-CDS-L-elsbetiae_contig7732:7236..7395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 7237..7395 -
1622816858.801661-CDS-L-elsbetiae_contig7732:7744..79061622816858.801661-CDS-L-elsbetiae_contig7732:7744..7906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 7745..7906 -
1691683866.8407178-CDS-L-elsbetiae_contig7732:7744..79061691683866.8407178-CDS-L-elsbetiae_contig7732:7744..7906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 7745..7906 -
1622816858.8145459-CDS-L-elsbetiae_contig7732:8838..89011622816858.8145459-CDS-L-elsbetiae_contig7732:8838..8901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 8839..8901 -
1691683866.8548784-CDS-L-elsbetiae_contig7732:8838..89011691683866.8548784-CDS-L-elsbetiae_contig7732:8838..8901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7732 8839..8901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816858.825905-UTR-L-elsbetiae_contig7732:8901..89041622816858.825905-UTR-L-elsbetiae_contig7732:8901..8904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7732 8902..8904 -
1691683866.8741152-UTR-L-elsbetiae_contig7732:8901..89041691683866.8741152-UTR-L-elsbetiae_contig7732:8901..8904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7732 8902..8904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7732.16681.1prot_L-elsbetiae_contig7732.16681.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7732 5026..8901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7732.16681.1

>prot_L-elsbetiae_contig7732.16681.1 ID=prot_L-elsbetiae_contig7732.16681.1|Name=mRNA_L-elsbetiae_contig7732.16681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=395bp
MSAFETAIEGDLNTQLDAQTEQCAQRWSEEKEKTEAAHAGLVELEELTVA
RLEGLGQVLKDRQGTVLAALKHEREANTRKILASALSDPLEEGQLLFERQ
VEETQLEGRRKQRRRLLDLSEQGVQVRQDEIEAALLKAARDQVENLMQVV
DKMQTQQTRLLVALQAEKKKVSMMRQHVSNRLGTPSQKEARAAANAAKQE
TLQSHGKKSTAAKRGKIAALAVEAAATFGKTTANVAEVEDDASEEVDGEH
NDNSLGGERDQLSGAELLDVCNFLEDDNLGLRQRLAKLELQRMQKEHGED
DEEPNDDSQLALVLEAKSELQGQLKGLQMANEERSKELERAQGVTPGPPA
ATAIVEATKTVTPEPENVYATGNATTDEFKADIEAEASRANRGR*
back to top

mRNA from alignment at L-elsbetiae_contig7732:5026..8904-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7732.16681.1 ID=mRNA_L-elsbetiae_contig7732.16681.1|Name=mRNA_L-elsbetiae_contig7732.16681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3879bp|location=Sequence derived from alignment at L-elsbetiae_contig7732:5026..8904- (Laminarionema elsbetiae ELsaHSoW15)
TGCATGTCTGCGTTTGAAACCGCCATCGAGGGGGACTTGAACACACAGCT GGACGCACAGACGGAGGTACAGCCGGCACACGGTCAACAGCTTGCTCTCA CCCCTCACCAACTGGGTAGTCAATCAAATCGTATACCGTATGCATTTTTC AATGTTGTGCCTTACTTTGCATCGGATGGAGGCATAGACATTTCACCACG CCGATAAACGAAAACCCATATCCATCTTTATAGCTCGGTTAATATTTCGT AGCACTGGGTGTTTGGGGCGATGGCTGTTCACAACGACGGGTCCCGGTGT ACCGTCGACAACAGCTACTGATAGCCCTATGCATACGCGGTTCGTTACTC CAACATACGCATGGAAAGTTTGTCCATCCCTCGATAGAAGCAATACTCAT AGTGTGGCACTGGGCCCATGAATCGCATGTATGTGTCAATAACGTCCCCA CGTCGGAGAGTCCCAGACATCATTCCCCCTACTCTTTCTCGCCGGCCATG ACTATACGGGACCCGAGCGCGTAGTCGGGATTCGTTGGTTAGAGGGGCAA CGGCTTTTAACGTGGAAACAATGGTGTTAAACACCTAGGGAAATACGGCT GGTTTGCCACCCCAGTTTGCGATATAAAATATACCAGGTGTACCGTAGCG TTGTTTTGTTGTGTTGCGAACAACAGCACTCGACACTACTTTTGGGGAAT CGGAAGTACACCGTTACGTATTTTTGCTGTTGGTTTGCTTATTTTTTAGG TGTTGCGGGGTAAGGAGCCATTCTGACCCGGACAAGCTATCTCCCCTGCT GTACTTGTTCGAACCATATAGGGGTAGTACAAACTATGTCAATTTAGCGC CGCCCGCATCGCTAGATACCAGGCGGACTTTAATTACCCCAGGTACGAGA TCAGACCGCCACCCACCGTCCTTTTCCATGTCTTCGCTTACATGCCCCGT TTCGTCGACACAAACGGAATCTTCACCTCGGGACGACAACCAATGTAGCA ATGCGCCCAGCGGTGGAGCGAAGAGAAAGAGAAGACGGAAGCGGCCCATG CAGGCCTGGTCGAGCTGGAGGAGCTCACGGTGGCGAGGCTCGAGGGGTTG GGGCAGGTGCTGAAGGATCGACAGGGCACGGTACTGGCCGCGCTTAAACA CGAGCGTGAGGTGGGTCGGTGGGCCAGTAAGATGCTAGGCCGCTGGCGGG GTTAGACGGGGATTGAAAACATTGCACGAAGCGGATGCAGGCGTTGTCGA CGAGTGTTCAGCGTGAGGGGCGGCCAAGTGCACGAAAGGTACAGTTCATG AATACAAATACTTATCATCCCAACGGGGTGTACGATATATAAGCTATAGG AATATCGCTTTCGTATGGGATGGGCTGGTTCATGGTGAGCGCCGCGTCTT GCGCTTCATTATCAGCACACACATACACACGCACATGTGTACACCGACTC TTGGCGGCGAAAAAAACATGCGCATACTATTTTATTTCAACTCTTTGGAA ACATCACAGGCAAACACGCGAAAGATCCTGGCGTCAGCGCTAAGCGACCC GCTAGAAGAAGGCCAATTACTATTCGAACGGCAAGTGGAAGAGACACAGC TCGAGGGCAGGCGTAAGCAACGGCGTCGGTTGCTGGATCTCAGCGAGCAA GGGGTGCAGGTCCGACAGGTACAAGTTTATCGCTGAGGCCGTATGTTGAC TTTCCCGAAAGCCACAACAGTAGTAAGATCCTTTGAGAAGCCGGCTCGTA GTGCGAGGTAGGCCGGTAGCGCCCCTCTGGAGAGGTAGATTATCAGGTAA CGCAATTCATCCACCACCAACGGGAAGGGGGGGAAGAGATATCGACGCGC ATTCCGACTCGGTGGATGTGAAGGCCAAAACTATGAATTGCAACACTACG CACAGCAGCTTTTGTGAGGCTCCGGTCAGGGGTATACGTTTCTCTTCTGC TGCTGAGAGCGCTCTGTCCGTCGGCCCAATGCAAGTCAGGGCGTAATTAA TGCGTGCGACACGGCGTGGTAGAGCACGGGTGGTTTACACACAGCAATTT CTTGTCTGCGCGCGAGAGGTGGTGGCCGCAGAAACGTGACTTTCTTCTGC AACGAACGCCTGTTTGTCTTTGATGCCAGGACGAAATCGAGGCGGCGCTG CTGAAAGCCGCACGGGATCAGGTCGAGAACCTCATGCAGGTGGTGGACAA GATGCAGACCCAACAGACCAGGCTGCTGGTGGCCCTGCAGGCCGAGAAGA AAAAAGTCTCCATGGTGAGTGTAGGAAACATAGTGCCCGTGGATACCTTT TGTACTGGGTGATGTAGACGTGGAGTTGTCCGTAGCACCCGGCCGTTTCG GTGCTGTCAGTTGCGGTACATGTTTAGTTTGTGGTTATCCCTTACGCAGT GATATAGGACACCAACACCACCACTAGCAGGAGCTGCAGCCGTGCGGCCA GAAGAATCAAATTTTCATGCGACCCTGGGTTCCCCCCACCGCTTCTCTCT TCAGATGCGCCAACATGTTAGCAACCGATTGGGCACTCCATCCCAGAAGG AGGCAAGAGCAGCAGCAAATGCAGCAAAACAGGAAACCTTACAATCCCAT GGGAAAAAATCAACGGCCGCAAAAAGAGGGAAAATCGCGGCTTTGGCGGT GGAAGCAGCTGCCACTTTCGGGAAAACAACCGCGAACGTCGCGGAGGTGG AAGACGACGCCAGCGAGGAGGTAGACGGCGAGCACAACGACAACAGCCTC GGTGGAGAAAGAGATCAGCTGTCGGGAGCCGAGCTGCTGGACGTCTGCAA CTTTCTGGAGGACGACAACCTGGGACTTCGCCAACGCCTGGCCAAGCTAG AGCTGCAGAGGATGCAGAAAGAGCACGGCGAAGACGACGAAGAGCCGAAT GACGACTCTCAGTTGGCCCTGGTAATGGTTGGTTCTACACCCTCATTTCG TGCTCTTTTATTCCACTCACTCTTGTGTTTGATCTTCGCTACAAAAGTCT ACGCCACACGCTGATCTCGTGGTGAGCCTTTCTACCATCCTACCGGGTTG GGCGAGAGACTTGTGCAGGTGGAACAGGAGTCAATCCACAAAGGGAGTGC ACTTCTTTGAGGGATTCGTCTGTTCTGGGAGACGCGACGCTGGCGATTGA AGGGGCGAAGGGTGCAGTACGAAGTATGGAGTAGTAGTATACCAGTACGT GGGAAGGAAACTGAAACGTCTCGTGTGGCCATAAAGTTACCATGCCCGCT TTTTTGTTGAGGAAAACGCTTCGGCATATTTTTGTGAGGCCAAGATAGGC GTCGCTTAAGATATAGGCGAAAGTCTTCCTCCTTGCACTTCGATGGCTAG GAAACGGAAAACAACGAAAACCCCAACCAAGACAACTTGTTAGAAGTATT CGATTCTTCCGGTAGGGAGTTCCGCCACGGCGACAGAGTAAAGACGACAC GAATAAGCTTGTATTTTTTCTGATAAGGTTTGTTCGATGCGCGTGCCAGG TCCACCCACGAACCCGTTTGGCCCTATTTGCTGAAACGAGAAAACGAGTA CTTTGATTGGCACTGCTGACAAGCAGTCTGGACACGCGTACAATAGCGTT CCCACTTTGGTCTCCCACCAACGTATGCAGGTGCTTGAGGCGAAGAGCGA ACTGCAGGGGCAGTTGAAGGGGCTTCAGATGGCCAATGAGGAGCGTTCGA AAGAGCTAGAGCGAGCGCAGGGGGTCACACCAGGACCACCGGCAGCGACC GCGATCGTCGAAGCCACCAAGACTGTGACGCCAGAACCCGAAAATGTCTA TGCGACTGGTAATGCTACTACGGACGAGTTCAAGGCCGACATTGAAGCCG AGGCGAGTAGAGCAAACCGTGGGCGGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7732:5026..8904-

>mRNA_L-elsbetiae_contig7732.16681.1 ID=mRNA_L-elsbetiae_contig7732.16681.1|Name=mRNA_L-elsbetiae_contig7732.16681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2370bp|location=Sequence derived from alignment at L-elsbetiae_contig7732:5026..8904- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGCGTTTGAAACCGCCATCGAGGGGGACTTGAACACACAGCTGGA
CGCACAGACGGAGATGTCTGCGTTTGAAACCGCCATCGAGGGGGACTTGA
ACACACAGCTGGACGCACAGACGGAGCAATGCGCCCAGCGGTGGAGCGAA
GAGAAAGAGAAGACGGAAGCGGCCCATGCAGGCCTGGTCGAGCTGGAGGA
GCTCACGGTGGCGAGGCTCGAGGGGTTGGGGCAGGTGCTGAAGGATCGAC
AGGGCACGGTACTGGCCGCGCTTAAACACGAGCGTGAGCAATGCGCCCAG
CGGTGGAGCGAAGAGAAAGAGAAGACGGAAGCGGCCCATGCAGGCCTGGT
CGAGCTGGAGGAGCTCACGGTGGCGAGGCTCGAGGGGTTGGGGCAGGTGC
TGAAGGATCGACAGGGCACGGTACTGGCCGCGCTTAAACACGAGCGTGAG
GCAAACACGCGAAAGATCCTGGCGTCAGCGCTAAGCGACCCGCTAGAAGA
AGGCCAATTACTATTCGAACGGCAAGTGGAAGAGACACAGCTCGAGGGCA
GGCGTAAGCAACGGCGTCGGTTGCTGGATCTCAGCGAGCAAGGGGTGCAG
GTCCGACAGGCAAACACGCGAAAGATCCTGGCGTCAGCGCTAAGCGACCC
GCTAGAAGAAGGCCAATTACTATTCGAACGGCAAGTGGAAGAGACACAGC
TCGAGGGCAGGCGTAAGCAACGGCGTCGGTTGCTGGATCTCAGCGAGCAA
GGGGTGCAGGTCCGACAGGACGAAATCGAGGCGGCGCTGCTGAAAGCCGC
ACGGGATCAGGTCGAGAACCTCATGCAGGTGGTGGACAAGATGCAGACCC
AACAGACCAGGCTGCTGGTGGCCCTGCAGGCCGAGAAGAAAAAAGTCTCC
ATGGACGAAATCGAGGCGGCGCTGCTGAAAGCCGCACGGGATCAGGTCGA
GAACCTCATGCAGGTGGTGGACAAGATGCAGACCCAACAGACCAGGCTGC
TGGTGGCCCTGCAGGCCGAGAAGAAAAAAGTCTCCATGATGCGCCAACAT
GTTAGCAACCGATTGGGCACTCCATCCCAGAAGGAGGCAAGAGCAGCAGC
AAATGCAGCAAAACAGGAAACCTTACAATCCCATGGGAAAAAATCAACGG
CCGCAAAAAGAGGGAAAATCGCGGCTTTGGCGGTGGAAGCAGCTGCCACT
TTCGGGAAAACAACCGCGAACGTCGCGGAGGTGGAAGACGACGCCAGCGA
GGAGGTAGACGGCGAGCACAACGACAACAGCCTCGGTGGAGAAAGAGATC
AGCTGTCGGGAGCCGAGCTGCTGGACGTCTGCAACTTTCTGGAGGACGAC
AACCTGGGACTTCGCCAACGCCTGGCCAAGCTAGAGCTGCAGAGGATGCA
GAAAGAGCACGGCGAAGACGACGAAGAGCCGAATGACGACTCTCAGTTGG
CCCTGATGCGCCAACATGTTAGCAACCGATTGGGCACTCCATCCCAGAAG
GAGGCAAGAGCAGCAGCAAATGCAGCAAAACAGGAAACCTTACAATCCCA
TGGGAAAAAATCAACGGCCGCAAAAAGAGGGAAAATCGCGGCTTTGGCGG
TGGAAGCAGCTGCCACTTTCGGGAAAACAACCGCGAACGTCGCGGAGGTG
GAAGACGACGCCAGCGAGGAGGTAGACGGCGAGCACAACGACAACAGCCT
CGGTGGAGAAAGAGATCAGCTGTCGGGAGCCGAGCTGCTGGACGTCTGCA
ACTTTCTGGAGGACGACAACCTGGGACTTCGCCAACGCCTGGCCAAGCTA
GAGCTGCAGAGGATGCAGAAAGAGCACGGCGAAGACGACGAAGAGCCGAA
TGACGACTCTCAGTTGGCCCTGGTGCTTGAGGCGAAGAGCGAACTGCAGG
GGCAGTTGAAGGGGCTTCAGATGGCCAATGAGGAGCGTTCGAAAGAGCTA
GAGCGAGCGCAGGGGGTCACACCAGGACCACCGGCAGCGACCGCGATCGT
CGAAGCCACCAAGACTGTGACGCCAGAACCCGAAAATGTCTATGCGACTG
GTAATGCTACTACGGACGAGTTCAAGGCCGACATTGAAGCCGAGGCGAGT
AGAGCAAACCGTGGGCGGTAGGTGCTTGAGGCGAAGAGCGAACTGCAGGG
GCAGTTGAAGGGGCTTCAGATGGCCAATGAGGAGCGTTCGAAAGAGCTAG
AGCGAGCGCAGGGGGTCACACCAGGACCACCGGCAGCGACCGCGATCGTC
GAAGCCACCAAGACTGTGACGCCAGAACCCGAAAATGTCTATGCGACTGG
TAATGCTACTACGGACGAGTTCAAGGCCGACATTGAAGCCGAGGCGAGTA
GAGCAAACCGTGGGCGGTAG
back to top