mRNA_L-elsbetiae_contig7716.16661.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7716.16661.1
Unique NamemRNA_L-elsbetiae_contig7716.16661.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7716.16661.1 vs. uniprot
Match: A0A6H5L9K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K7_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.020e-43
Identity = 95/149 (63.76%), Postives = 110/149 (73.83%), Query Frame = 1 
Query:  280 GPCVRFEGITVELSSFSGCQLDFGKSGSLVLSLDAFTGTITLQSP-SSHSSPAPKSRGVGEDNF-AHSLPLCTTGSEAGSLGVLDGADDSEAAAMDHTDFDMALSQLEQGDSPPKSFSGAAXXXXXXAGRSPTNILFDSPSAMRQACEG 720
            GP +RFEGIT+ELSSFSGCQ DFGKSG+LVLS + FTGT++LQS  SS  S  PK RG G     +++LPLC T SEAGSLGVLDGA   EA AMD +D+DMALSQLE GDSP  SFS  A      A RSP+  +F+SPS +RQACEG
Sbjct:   30 GPSIRFEGITLELSSFSGCQFDFGKSGNLVLSFNGFTGTVSLQSSLSSSGSSTPKIRGGGARGARSYALPLCCTSSEAGSLGVLDGA---EAVAMDQSDYDMALSQLEHGDSPKSSFSATAAGAA--ASRSPSTAMFNSPSTLRQACEG 173
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BLAST of mRNA_L-elsbetiae_contig7716.16661.1 vs. uniprot
Match: D8LL74_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL74_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.420e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:  280 GPCVRFEGITVELSSFSGCQLDFGKSGSLVLSLDAFTGTITLQSP-SSHSSPAPKSRGVG 456
            GP +RFEGIT+ELSSFSGCQ DFGKSG+LVLS + +TGT++LQS  SS  S  PK RG G
Sbjct:   31 GPSIRFEGITLELSSFSGCQFDFGKSGNLVLSFNGYTGTVSLQSSLSSSGSSTPKIRGEG 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7716.16661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L9K7_9PHAE1.020e-4363.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL74_ECTSI3.420e-1368.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7716contigL-elsbetiae_contig7716:3137..8090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue2.8e-13
Seed eggNOG ortholog2880.D8LL74
KEGG koko:K20285
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-24_002680.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size727
Cds size486
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7716.16661.1prot_L-elsbetiae_contig7716.16661.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7716 6607..8090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.1777081-UTR-L-elsbetiae_contig7716:3136..32651622816857.1777081-UTR-L-elsbetiae_contig7716:3136..3265Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7716 3137..3265 +
1691683865.6285946-UTR-L-elsbetiae_contig7716:3136..32651691683865.6285946-UTR-L-elsbetiae_contig7716:3136..3265Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7716 3137..3265 +
1622816857.1907628-UTR-L-elsbetiae_contig7716:6495..66061622816857.1907628-UTR-L-elsbetiae_contig7716:6495..6606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7716 6496..6606 +
1691683865.6455452-UTR-L-elsbetiae_contig7716:6495..66061691683865.6455452-UTR-L-elsbetiae_contig7716:6495..6606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7716 6496..6606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.2047324-CDS-L-elsbetiae_contig7716:6606..68261622816857.2047324-CDS-L-elsbetiae_contig7716:6606..6826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7716 6607..6826 +
1691683865.6562595-CDS-L-elsbetiae_contig7716:6606..68261691683865.6562595-CDS-L-elsbetiae_contig7716:6606..6826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7716 6607..6826 +
1622816857.2171376-CDS-L-elsbetiae_contig7716:7824..80901622816857.2171376-CDS-L-elsbetiae_contig7716:7824..8090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7716 7825..8090 +
1691683865.6679053-CDS-L-elsbetiae_contig7716:7824..80901691683865.6679053-CDS-L-elsbetiae_contig7716:7824..8090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7716 7825..8090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7716.16661.1

>prot_L-elsbetiae_contig7716.16661.1 ID=prot_L-elsbetiae_contig7716.16661.1|Name=mRNA_L-elsbetiae_contig7716.16661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
MVSGGGGGGGGGDGPCVRFEGITVELSSFSGCQLDFGKSGSLVLSLDAFT
GTITLQSPSSHSSPAPKSRGVGEDNFAHSLPLCTTGSEAGSLGVLDGADD
SEAAAMDHTDFDMALSQLEQGDSPPKSFSGAAAAAAAAAGRSPTNILFDS
PSAMRQACEGER
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mRNA from alignment at L-elsbetiae_contig7716:3137..8090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7716.16661.1 ID=mRNA_L-elsbetiae_contig7716.16661.1|Name=mRNA_L-elsbetiae_contig7716.16661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4954bp|location=Sequence derived from alignment at L-elsbetiae_contig7716:3137..8090+ (Laminarionema elsbetiae ELsaHSoW15)
AGCACACACAGCAGCAGAGTGGAGCTTGGAGAGAGGAAGCACCCATATTC
TAAGCGCCCCCACTCAGGAGTAGGTACCTCTTCGCTGCGTGCTTCTCCGC
TGCCTTTCTACCCACAGGGAAACAGCAAGGTGAGAAGCAGTGAAGAATTC
AAAAATTGAAAGGGCCGTGTCCAGAGAGGCAGGAGCAAGCAGATCAACTG
CTGTCTTCCACGATACTCTTGTGGCGGCACCACAGCACCTGTACCAGTAC
AAGTATAAGTATCGCCATCCATCACGGGTTGCTTGATGCCCTTCGCTCCC
TCTCAGCAGAGAGAGCCTTGCTCTTGTGTCCCAGGTTGTCCGGACCGAGA
GAGATGTCCGTAAAAGCAAACGTATATTTGTGTTTTTTGAATCCCCTCAC
GCTCGGCCGCGAGACCAACGCTCGTGTGTGTGTATTATTGTTGTACATAC
CACCGCCTATAGCAGTAACAGCACCGGTAGCAGCAGCAGAGGCACCAGCA
GAAGCAACCGTGGCAGTCTAGAACAAACGGACTGGGTGGGTTGTGAGGTA
CCGCGCGGAGCAGGTTGCTGAAGTCTCTGTCTACAGGCGACCTTCTCAAG
AGTGAGGCTCCGGGATCCCCACGCACCCTTGAAAAGTTTGCCCCCGAGTA
CAGAAGCAAGCTATTTCGCTAGACAAAGAAGCGTGCAATGTGCAGTCTAG
CTGTGGTGCGTTTTAAGTAGTGGTTCGGTACCAAGAGCCTTTGTGAAAAC
AAAGTAGATTACAAACATGACATCCTTCAAAAGAACAACAAACTATCTAA
CCGCGACCACAGATACCGTAGTCATGCGGGTTATCGCACCCCCGTGTTAA
GCGTATTTCTCCACAACCAGGAGGGTATCACTGCCGAAAAGGGTGGTTTT
CGGAGCGTCTCGTCGGGGGCTGTCCAGAGAGGTATCAGTTAGTGTTCGCA
CCCTCCTGGTTGTGGAGAAATACGCCTTAGAAAAACGCGAACACGGGGGT
GCGATAACCCGCATGATTACGGTATGTGTGTGTGTGTGCTTGTCCTTCCC
ATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACGTATACTACACCTTGC
GGTGTACGTAGAGGTACTACACTTTGCAGTGCACTTGTCTGTACAACTAG
AGCCAACCGGGGTCACACAGGAGGAGGTGAACACTGGGGCTTTTTCTTCT
TTTTTATTTCCTTTTTTTCGCCCCACCTTCCTCCTGCGGTTCTTGCCTTG
GGTTTTATCGCGAGAAGGGTTCAGCTGTCCCTTTCCCTCGTCAACGTGAT
TACGTCGAAGTTTGGTACTCATGAGCTTTTCAGCTTTAATCGCTTTCACC
TGCAAAGTCGCAAAAGAACGGTATACAGCAGTTTGAAAGCGAATCAGTTA
GATACAGAGTCGTGGCAGCAGCCTTTTTCATCATCGTTGTCTGTCGTTGC
ATTTTCTCAGCAGCGTTTGCCCGTCCTTCCGAAAACGGTATCTACTGCTG
TCAAGATAATGTAGAATCAATGGACACTCGCTCACGTACGCTATGCGTCA
ATTATTGGCTGGTTTTTGAACCCCTGATCGCAAGAGGGCTGTGGGTAGGT
AGGTATTGCAGAGGTGTGCAAATCAATCCGACACAGATACCATTTTTACG
GCGCCCGGGAATCTGCCAATATTGGCAGGAGGGAAACACCTGCCACAAGA
TTGTTCCAACATTGTTCTTGGAGGTAGCCGCGTCTTTCATGCAGAAGGAA
GAACGCAGGGTTTCCAGCCTTTAGCCGAGTTTGTAGTTGTGCCCTCCCCC
CCCCCCCCCCCTTCATCACCGAGAGGCCACTCAGAGAGCAGCTCCCAGTC
TACTGCAGTACCGGCCCGCTATGTAGTAACAAAGATCCGAGTAAGAAGCT
TACATAGCCCGCGATTTTCAAATTATGCAAAAGCAAGTGTCCAGCCTGGG
CGGCGAGTGCCTCACTAAAATCCTACACATTGCAAGAGAAAGTGTTCAGT
TTGCCCTGGTTTTACGCTGTTTCTCCGTCCCTTGTCGAGACCCCCTCCCC
CTCCCCCGGTTGTACCTTTGCGACACAAGTCAACACACTCCCGGGACCGA
TTTTTAAAGCTCGATCCCTCCTCACAGCGAGAAGAGTTTCAGTGCCGAAA
AAGGGCGGCGTTGAAAAGATCTCGTCGATCTGTAGCGGCCCGAAAGCATG
TCGTTTGGTATATAGATATTTGAATCATCCTCGTTGCGAAGTACTTCAGC
TTTGAAAATCGGCCCAGGGGGTGTGTTATCTTGTGTCGTACAGTAGGAGT
ATACGGTAGGCGTGGTACCCTTCTAATGGTACGTACGTAAATAAGTACCT
TAATTGTGCGGGCTATCGCACACCCCCTGGACCGACTGTTAGAGCTCGAT
TACTCCGTGACGAAAAGGATGCCAACACCAAACGTCACGTTTTCGGACAG
CTACATACCGTAATCATGCGAAGGTTCGCACCCCCGTGTTAGCATTTTTC
TAAAGCGTAAATCTCCACAACCAGGAGGGTGCGAACACTAACTGATACAC
CCCCGTGTTGGCATTTTTCTAAAGCGTAAATGTCCACAACCAGGAGGGTA
CGAATATTTTTCTAAAGCGTAAATCTCCACAACCAGGAGGGTACGAACAC
TAACTGATACTTTCGGCAGTGGTACCCTCCTGGTTGTGGGGATTTACGCT
TTAGAAATCGCTTTAGAAAAATGCTAACACGGGGGTGCAAACCTTAACCT
TCGCATGATTACGGTATGGACGTGATCTTTCCAACGCCGCCCTTTTCGCC
ACTGTCACTACTCTTCTTGCCGTGGAGTAACCGAGCTTTGAAAATCGGTC
CAGGGGGTGTGCGATAAAAATCCCGTGCAATTACGGTACAATAGTACGTT
ACACCACCAGCAGTGTCCCAAAATAAACAACAGCCTACCGTATACGACAC
AAGATAACACCCCCTGGACCGATTGTCAGAGTCGGTTGCTCCGCAACGAG
GTGTGGTTCTTTTACCAAACGGCGGCACATTTTCGGACAGCTATTGATGG
GTTATTTCCCTGCATAACGCCGCTGTTTTCGGGGCTGACACTCTTCTCGC
TGTCGAGTAATTGGGCTTTGAAAATCGGTCCAGGGGGTGTGTCATCTCGT
GTCGAATACGGTAACCCCTTGCGGAGGAGAGAGCCAGCCGTATGGATCTT
GAACAATTTCGGCAGGCTCGGGCAAAAGCTCGCGCAAGAACGGACCTGAG
GTGTATACATACATGAATACACACACACACATCTGCCGCCCTAAATACGT
GTATCTCTATTTATCACCCGCATAATTTCATCATGCACTCCCGGGGCAAT
TTTTCTCAGGAGCCACACCACGGAGGCGGCAAGCCACGGCCATAAGATTG
GATACAGTACGCAGCAGCAGCAGCAGCAGTAAATAAACTTTACTTTTTCA
ACCGAAGACCAACCACCACAATGGTGTCCGGCGGCGGCGGCGGCGGCGGG
GGCGGCGATGGTCCCTGCGTACGGTTCGAGGGCATCACCGTGGAGCTGTC
GTCCTTCTCGGGCTGCCAGCTCGACTTCGGCAAGAGCGGCAGCCTCGTCC
TGAGCCTCGACGCCTTCACCGGCACGATCACCCTCCAGAGCCCCTCCTCC
CACTCCTCGCCCGCGCCCAAGTCGCGGGGGGTAGGCGAAGGTGAGAGAGA
GAGAGAGAGAGAGAGCAAGCGCGATAAGAGTTTTGTCTCGCTGATTGGTT
GATGCCAGCTTCGACCTCACCGTCGACGAGGGAAAGGGACGGCTGAACCC
TTCCCGCGACAAAAAACTTAGGCAAGCACCGACCGACAGAAGGGGGCAGT
GGGGGCCCCGGGGAAAGGAAACCCTTCTGTGTGACCAACCACGGTTCGGT
ACTCTGGCAAGATAGACACCCTCGTGGCAAGGAGTCCATCGAGCACCGGA
AAATAAATGTCAAGAGGAAGAAAGAAAAAAAGGGCACGGAGCGGTCGCTA
TGTACGCTGTATGTAGCGCGTGCGTGCAGGCATTGTCTGTCCCGGTTTTT
TTTTGTTTGTGGGTGTTTTGGTCTTGCGGCGGCGGCGGCCGGGGGCACCG
CATGATGAAAGTGTGTTGGTACATACCTACCTCGAAGTATGTGCATAGCT
GGCAGAACGCTCGATGGTGCCGCGGTACGAAGTAACGTGCCGGCTCAGGC
GTGCAGCGTGGGAGAGGGTCGGTGCATAATTAGCTCTTGGTGGAAGCTAA
AGGTGGGGTGCTTGGTGATGGTGTGTTGCGCAGTTGGCGCCCCACGCTTG
ACGCGCATGCATGAGGGTCGTGGGTTCGGCAGCAGCAGCAGCAGCTACGA
TAGCCGTGACGCAGCAACAAAAGACGCGCAGCAGCATCAAGGAGAACATA
TCCACACACTTCGTAGATTTATATTAACATACGAGCTGTGAGTTGAAGGG
GGCAAGATGGCAGTGGCCTGCCGCGTGGTTGATTTACCAAGGAGGAGTCA
TGCCATCTCACGTTGATGCCCGTGGGTTTCTTCAGGCCGCGTCGCTTGTT
GTTTTGTTGTTGATTTTCGTTGTTTTTATTGTTTAGTTGCGATCAAGCCC
TCATCAAAGTCACCTCCCTTCGTTTGTTCCTCCCTTCCCCGCCTTTTGCT
ATTTTCTCTCTCCGCCACCTCCACCGCCGCCGCCGCAGACAACTTCGCGC
ACTCCCTCCCGCTGTGCACCACGGGCAGCGAGGCGGGCTCTCTCGGCGTC
CTCGACGGGGCAGACGACTCCGAGGCCGCCGCGATGGACCACACCGACTT
CGACATGGCTCTGTCCCAGCTGGAGCAGGGAGATTCCCCCCCCAAGTCGT
TCTCGGGCGCGGCGGCGGCGGCGGCAGCGGCGGCGGGCCGGTCGCCGACC
AACATCCTCTTCGACAGCCCGTCCGCCATGCGCCAGGCGTGCGAGGGCGA
ACGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7716:3137..8090+

>mRNA_L-elsbetiae_contig7716.16661.1 ID=mRNA_L-elsbetiae_contig7716.16661.1|Name=mRNA_L-elsbetiae_contig7716.16661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig7716:3137..8090+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTCCGGCGGCGGCGGCGGCGGCGGGGGCGGCGATGGTCCCTGCGT
ACGGTTCGAGGGCATCACCGTGGAGCTGTCGTCCTTCTCGGGCTGCCAGC
TCGACTTCGGCAAGAGCGGCAGCCTCGTCCTGAGCCTCGACGCCTTCACC
GGCACGATCACCCTCCAGAGCCCCTCCTCCCACTCCTCGCCCGCGCCCAA
GTCGCGGGGGGTAGGCGAAGATGGTGTCCGGCGGCGGCGGCGGCGGCGGG
GGCGGCGATGGTCCCTGCGTACGGTTCGAGGGCATCACCGTGGAGCTGTC
GTCCTTCTCGGGCTGCCAGCTCGACTTCGGCAAGAGCGGCAGCCTCGTCC
TGAGCCTCGACGCCTTCACCGGCACGATCACCCTCCAGAGCCCCTCCTCC
CACTCCTCGCCCGCGCCCAAGTCGCGGGGGGTAGGCGAAGACAACTTCGC
GCACTCCCTCCCGCTGTGCACCACGGGCAGCGAGGCGGGCTCTCTCGGCG
TCCTCGACGGGGCAGACGACTCCGAGGCCGCCGCGATGGACCACACCGAC
TTCGACATGGCTCTGTCCCAGCTGGAGCAGGGAGATTCCCCCCCCAAGTC
GTTCTCGGGCGCGGCGGCGGCGGCGGCAGCGGCGGCGGGCCGGTCGCCGA
CCAACATCCTCTTCGACAGCCCGTCCGCCATGCGCCAGGCGTGCGAGGGC
GAACGAACAACTTCGCGCACTCCCTCCCGCTGTGCACCACGGGCAGCGAG
GCGGGCTCTCTCGGCGTCCTCGACGGGGCAGACGACTCCGAGGCCGCCGC
GATGGACCACACCGACTTCGACATGGCTCTGTCCCAGCTGGAGCAGGGAG
ATTCCCCCCCCAAGTCGTTCTCGGGCGCGGCGGCGGCGGCGGCAGCGGCG
GCGGGCCGGTCGCCGACCAACATCCTCTTCGACAGCCCGTCCGCCATGCG
CCAGGCGTGCGAGGGCGAACGA
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