mRNA_L-elsbetiae_contig7714.16659.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7714.16659.1
Unique NamemRNA_L-elsbetiae_contig7714.16659.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7714.16659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7714contigL-elsbetiae_contig7714:7666..8088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7714.16659.1prot_L-elsbetiae_contig7714.16659.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7714 7676..7981 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.7453103-UTR-L-elsbetiae_contig7714:7665..76751622816856.7453103-UTR-L-elsbetiae_contig7714:7665..7675Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7714 7666..7675 +
1691683865.3041434-UTR-L-elsbetiae_contig7714:7665..76751691683865.3041434-UTR-L-elsbetiae_contig7714:7665..7675Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7714 7666..7675 +
1622816856.7666032-UTR-L-elsbetiae_contig7714:7981..80881622816856.7666032-UTR-L-elsbetiae_contig7714:7981..8088Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7714 7982..8088 +
1691683865.3239021-UTR-L-elsbetiae_contig7714:7981..80881691683865.3239021-UTR-L-elsbetiae_contig7714:7981..8088Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7714 7982..8088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.7556324-CDS-L-elsbetiae_contig7714:7675..79811622816856.7556324-CDS-L-elsbetiae_contig7714:7675..7981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7714 7676..7981 +
1691683865.3143487-CDS-L-elsbetiae_contig7714:7675..79811691683865.3143487-CDS-L-elsbetiae_contig7714:7675..7981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7714 7676..7981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7714.16659.1

>prot_L-elsbetiae_contig7714.16659.1 ID=prot_L-elsbetiae_contig7714.16659.1|Name=mRNA_L-elsbetiae_contig7714.16659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MLNSRFYHARYVARYGWNIGELFVDIISTCVRAVLLAVSSSAYMSSSYQP
INYYRFYLLFCKSGSCAEVNNLFEYQQVSVSLVSHIHHHTSVLDVSPLLH
M*
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mRNA from alignment at L-elsbetiae_contig7714:7666..8088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7714.16659.1 ID=mRNA_L-elsbetiae_contig7714.16659.1|Name=mRNA_L-elsbetiae_contig7714.16659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=423bp|location=Sequence derived from alignment at L-elsbetiae_contig7714:7666..8088+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGACGTGATGCTCAACAGCAGATTCTACCACGCCAGGTACGTTGCAC
GGTACGGGTGGAATATTGGTGAATTATTTGTGGATATCATTTCGACCTGT
GTCCGCGCGGTGTTGCTTGCTGTTAGCTCCTCGGCATATATGTCAAGCTC
CTATCAACCTATCAATTATTACCGTTTCTACCTGCTATTTTGTAAATCGG
GTTCATGTGCCGAGGTCAATAATCTCTTTGAATATCAACAAGTCTCAGTG
TCACTGGTATCCCACATACACCACCACACATCCGTCCTTGACGTAAGTCC
CCTCCTTCACATGTGACGCTTCCCTTTCATGATGTTTTACAGATACAGGG
CAGGAATGAGCCTTACGAATGGCTTCCGGACGATTTCCTCCTCACCACAC
ACCCTACTAACATAGAGTGGATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7714:7666..8088+

>mRNA_L-elsbetiae_contig7714.16659.1 ID=mRNA_L-elsbetiae_contig7714.16659.1|Name=mRNA_L-elsbetiae_contig7714.16659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig7714:7666..8088+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCAACAGCAGATTCTACCACGCCAGGTACGTTGCACGGTACGGGTG
GAATATTGGTGAATTATTTGTGGATATCATTTCGACCTGTGTCCGCGCGG
TGTTGCTTGCTGTTAGCTCCTCGGCATATATGTCAAGCTCCTATCAACCT
ATCAATTATTACCGTTTCTACCTGCTATTTTGTAAATCGGGTTCATGTGC
CGAGGTCAATAATCTCTTTGAATATCAACAAGTCTCAGTGTCACTGGTAT
CCCACATACACCACCACACATCCGTCCTTGACGTAAGTCCCCTCCTTCAC
ATGTGAATGCTCAACAGCAGATTCTACCACGCCAGGTACGTTGCACGGTA
CGGGTGGAATATTGGTGAATTATTTGTGGATATCATTTCGACCTGTGTCC
GCGCGGTGTTGCTTGCTGTTAGCTCCTCGGCATATATGTCAAGCTCCTAT
CAACCTATCAATTATTACCGTTTCTACCTGCTATTTTGTAAATCGGGTTC
ATGTGCCGAGGTCAATAATCTCTTTGAATATCAACAAGTCTCAGTGTCAC
TGGTATCCCACATACACCACCACACATCCGTCCTTGACGTAAGTCCCCTC
CTTCACATGTGA
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