mRNA_L-elsbetiae_contig7702.16643.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7702.16643.1
Unique NamemRNA_L-elsbetiae_contig7702.16643.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7702.16643.1 vs. uniprot
Match: A0A6H5KBU9_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU9_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.470e-22
Identity = 58/103 (56.31%), Postives = 62/103 (60.19%), Query Frame = 2 
Query:    2 AVFVKALDEPTYGDMYADLCVRLNERF---------------------------------VKEGMAKAQEDDAELTPIPFPYEMELVEMKIKDKKFVKIMQGK 211
            AVF KALDEPT+ DMYADLCVRLNER                                  V E MAKAQED AEL PIP PYEMELVEM+IKDKKF+K+MQGK
Sbjct:  377 AVFDKALDEPTFVDMYADLCVRLNERSTSWAFSIYNEDANQWVWTAEVGVEMEVLGPFGSVMEAMAKAQEDGAELKPIPLPYEMELVEMRIKDKKFIKLMQGK 479
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BLAST of mRNA_L-elsbetiae_contig7702.16643.1 vs. uniprot
Match: D7FZS3_ECTSI (MIF4G domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS3_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 6.430e-22
Identity = 59/105 (56.19%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:    2 AVFVKALDEPTYGDMYADLCVRLNER-----FVK------------------------------EGMAKAQEDDAELTPIPFPYEMELVEMKIKDKKFVKIMQGK 211
            AVF KALDEPT+ DMYADLCVRLNER     FVK                              E MAKAQED AEL PIP PY+MELVEM+IKDKKF+K+MQGK
Sbjct:  830 AVFDKALDEPTFVDMYADLCVRLNERSTSWAFVKSIYNEDANQWVWTAEVGVEMEVLGPFGSVVEAMAKAQEDGAELKPIPLPYDMELVEMRIKDKKFIKLMQGK 934
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BLAST of mRNA_L-elsbetiae_contig7702.16643.1 vs. uniprot
Match: A0A7S2UYN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYN7_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 7.360e-5
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 2 
Query:    5 VFVKALDEPTYGDMYADLCVRLNERF 82
            +F KALDEP +GDMYAD+CVRLNE+F
Sbjct:  235 IFDKALDEPNFGDMYADMCVRLNEKF 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7702.16643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KBU9_9PHAE3.470e-2256.31MI domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FZS3_ECTSI6.430e-2256.19MIF4G domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2UYN7_9STRA7.360e-576.92Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7702contigL-elsbetiae_contig7702:7243..9385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816855.9758556-CDS-L-elsbetiae_contig7702:7242..73301622816855.9758556-CDS-L-elsbetiae_contig7702:7242..7330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 7243..7330 +
1691683864.7699254-CDS-L-elsbetiae_contig7702:7242..73301691683864.7699254-CDS-L-elsbetiae_contig7702:7242..7330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 7243..7330 +
1622816855.9902205-CDS-L-elsbetiae_contig7702:9221..93851622816855.9902205-CDS-L-elsbetiae_contig7702:9221..9385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 9222..9385 +
1691683864.7810512-CDS-L-elsbetiae_contig7702:9221..93851691683864.7810512-CDS-L-elsbetiae_contig7702:9221..9385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 9222..9385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7702.16643.1prot_L-elsbetiae_contig7702.16643.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7702 7243..9385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7702.16643.1

>prot_L-elsbetiae_contig7702.16643.1 ID=prot_L-elsbetiae_contig7702.16643.1|Name=mRNA_L-elsbetiae_contig7702.16643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
GGVCQGPRRAHLRRHVCRPVRPPQREVRQGGHGQGPRGRRGADAHPLSVR
DGAGGDEDQGQEVRQDHAGQGGGQSGAPACHAMP
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mRNA from alignment at L-elsbetiae_contig7702:7243..9385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7702.16643.1 ID=mRNA_L-elsbetiae_contig7702.16643.1|Name=mRNA_L-elsbetiae_contig7702.16643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2143bp|location=Sequence derived from alignment at L-elsbetiae_contig7702:7243..9385+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGTGTTTGTCAAGGCCCTCGACGAGCCCACCTACGGCGACATGTATG
CCGACCTGTGCGTCCGCCTCAACGAGAGGTTCGTCAAGGTATGCATGTAT
ATACGTAAATATGAGGATGAGGGAGTGGTGGGTATGACGGTATGGTTGGC
GGTGGAACGAACCCTGCGCTTTTAGGTGCCTGCGTGTGCTTGGGGTGTGG
GTGTGGATGTGTGCGTCAGCGAGAGGAGCACCTCGTGATCCTTGGTCAAG
GTATCTGCATATGTACAAGCATGACACGTGTGTGCGGTGGGTGTGAATGT
GGGTGTTGGTGTGGGTGTGGGATGTCGTTAGATGATCGACGATGCAACGA
ATCCTTCGTTTTTAGGTGCGTTCGTGTGCTTGGGGGTGTGTGTGCGGGTG
TGGGGTAAATGATGACACTTCTATGACAAGCGAGGCGACGAAACGGTTCG
GCTTGGCCCGTGGTGACGGTGCGGTGTCCTGCCGTGATATATGTTCTTAG
TTCTGGAGTCGTCATGCGTGTGTCGCGCATGAAGTGCCGTGTCGTGTGCC
GCCGTTAATGCTCCGTGTCATGTGCCTTGCGTCGTGCGGAAACGGCGGGT
GGGGTGTTTCAAAACAGTTACGGGGCTCGCTCCAGGTGACTGTTTTCGTG
CTTCAAAATGTATCGCTTTATTGCTTAATGTTCGGGGCACCCCTGGCCAC
GAACGAGCTCGAAATCAAACCGCCGTGCCCCCAAACCCGCCCCGACCACA
ACGCGTCGCATCGCGTCGCATGGTGTCGCCGCCCGGCCATCGGCATATCG
CCTTTTGGTGCAATTTCACCAGTCGATCTACAACGAGGACGCCAACCAAT
GGACGTGGACGGCCGAAGTGGGGGTGGAGATGGAGGCGCTAGGTCCCTTC
GGCAGCATTGTTGTGCGTGTAGGGCTTGATTGACCTCCTATGCTTTTGCA
CAGTATGCTTTTGCATATTAATCATAAAAAGCACAAACAAAATGCGAGCA
TAAGTGGGCATACTTGCCATTTTTAAGCATATTTTGAGCCTAAACATAGT
TCGCCTTTTTTTGGAACAGTAAAACGAGCATATTTGGGAGTTTAGAACGA
GCGTTTCAATGCTTTTTCAAAAATAGGAGCATACAAAAAGAAAATAAAAA
CGTGCATATTTAAGGAGGTAAAAAAAACAAAAAAACTACTTGCGTGATAC
TAACCATGAAGAAGAAGAAGAAGCAGACGAAGACGAAGAGGAAGAAGATC
GGCTCTTTTTTTATTTTTTTTTGCGGAAAATGCTCCCGCCTCCTCATCGT
GTTGGAGATCTTGCGAAGCGTAGCGCTGACCCTCGTCGTGGTTGGAGCTG
CGTGAGCCTGTTTTCGCGGATGGACGTTTATACGCGCCATGATAAGTTGG
GTGGGCATGGGCGTCTGTCTGGGTTCACGGGGATGGTGGTTCCATGCCGC
GGCCGAAATCTCGGTGTGGGGAGGTGGGTAAATACAGCGGTAGGTGAGTT
TCGTCGGGTGTAGGTAGAAGTATGTATTCTATGTAGGTGGAATCATTAAA
GATGGCACACGGCCGGCGAGAAGGCCAAAAGCCAGCAAATCTTAAGAGGG
CGCAAAGGGCGCGGTACATCGACCGTTGTTGCTTTTTTGAGAGGCGGCTT
CGTGCCTGCAACCGTGCCTGCGGCCGTGCCTGCGGCCGTGCCTGCGGCCG
TGCATCAGGCGTGTTTGCGGGTGGAGGAGGAGGCGTGTGCGGGTGTGTAT
AGTGTATGGCACGGAGCAAGCACTCTTTTGACTGTTTTCGCCTGATTGAG
CCAATCAAATGCTGACTGCTGTGTTGAAGAGTATATATGTCTTGCCTTTT
CAGCACTACCCGTGCGATTTCTTTTGTTCGCTTTTTTTGTTTGTTTTCTG
CTGCTGCTGCTAATGCTGCCTCTGCTCTTGTTTTTCTCTCTTGTGATTGG
TGTGATGTTTTTATTATTATTATTGTCAGGAGGGCATGGCCAAGGCCCAA
GAGGACGACGCGGAGCTGACGCCCATCCCCTTTCCGTACGAGATGGAGCT
GGTGGAGATGAAGATCAAGGACAAGAAGTTCGTCAAGATCATGCAGGGCA
AGGGGGGGGGCAGTCAGGTGCGCCAGCATGCCATGCCATGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7702:7243..9385+

>mRNA_L-elsbetiae_contig7702.16643.1 ID=mRNA_L-elsbetiae_contig7702.16643.1|Name=mRNA_L-elsbetiae_contig7702.16643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig7702:7243..9385+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGTGTTTGTCAAGGCCCTCGACGAGCCCACCTACGGCGACATGTATG
CCGACCTGTGCGTCCGCCTCAACGAGAGGTTCGTCAAGGGCGGTGTTTGT
CAAGGCCCTCGACGAGCCCACCTACGGCGACATGTATGCCGACCTGTGCG
TCCGCCTCAACGAGAGGTTCGTCAAGGAGGGCATGGCCAAGGCCCAAGAG
GACGACGCGGAGCTGACGCCCATCCCCTTTCCGTACGAGATGGAGCTGGT
GGAGATGAAGATCAAGGACAAGAAGTTCGTCAAGATCATGCAGGGCAAGG
GGGGGGGCAGTCAGGTGCGCCAGCATGCCATGCCATGCCGGAGGGCATGG
CCAAGGCCCAAGAGGACGACGCGGAGCTGACGCCCATCCCCTTTCCGTAC
GAGATGGAGCTGGTGGAGATGAAGATCAAGGACAAGAAGTTCGTCAAGAT
CATGCAGGGCAAGGGGGGGGGCAGTCAGGTGCGCCAGCATGCCATGCCAT
GCCG
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