mRNA_L-elsbetiae_contig77.16636.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig77.16636.1
Unique NamemRNA_L-elsbetiae_contig77.16636.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Match: D7G6E4_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E4_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 2.230e-67
Identity = 102/117 (87.18%), Postives = 113/117 (96.58%), Query Frame = 2
Query:  212 TWNLVYTTTAGASGGKLGPFVGEVQQEVDIAEGLYINYVRVGPLTGELEATWEVVNKNQWKVVFKTIAFLLWGQQLVKKELGQAGLWTLSYLDNDMRVLTARSLERDTGNLYVLARA 562
            TW+L+YTTT GASGGKLGPF+GEVQQEVDIAEGLY+NYVR+GPLTG LEATW+VVNK+QWKVVFK+IAFLL+GQQLVK EL QAGLWTLSYLD+DMRVLTARSLERDTGN+YVLARA
Sbjct:  112 TWDLIYTTTPGASGGKLGPFIGEVQQEVDIAEGLYVNYVRLGPLTGRLEATWDVVNKSQWKVVFKSIAFLLFGQQLVKNELDQAGLWTLSYLDDDMRVLTARSLERDTGNVYVLARA 228          
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Match: K8Z6W7_NANGC (PAP_fibrillin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z6W7_NANGC)

HSP 1 Score: 123 bits (309), Expect = 1.260e-31
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  212 TWNLVYTTTAGASGGKLGPFVGEVQQEVDIAEGLYINYVRV--GPLTGELEATWEVVNKNQWKVVFKTIAFLLWGQQLVKKE--LGQAGLWTLSYLDNDMRVLTARSLERD-----TGNLYVLAR 559
            TW LVYT+T+G S GKLGPFVG+V Q++D A G Y+N+VR+  G + G L ATWEV   N+WKV+F+ I F ++G  LV K+   GQAG W L+Y+D D+R+LTA +L  +       N+YVL R
Sbjct:  116 TWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKKPLSGQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRR 240          
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Match: A0A0G4E8H9_VITBC (PAP_fibrillin domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4E8H9_VITBC)

HSP 1 Score: 119 bits (299), Expect = 4.300e-30
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  215 WNLVYTTTAGASGGKLGPFVGEVQQEVDIAEGLYINYVRVGPLTGELEATWEVVNKNQWKVVFKTIAFLLWGQQLVKKELGQAGLWTLSYLDNDMRVLTARSLERDTG------NLYVLAR 559
            W LVYTTT G+S GKLGPFVG+V Q +D+   +YINYV +GP+   LEA+W+V+  N+W+V F+ I F ++G  L K EL   G W ++YLD+D R+L AR   +         N+YVL R
Sbjct:  123 WRLVYTTTPGSSAGKLGPFVGDVTQMIDMDSDVYINYVDIGPVQAFLEASWDVLGPNRWRVKFQNIGFRVFGIPLAKNELKNVGDWRMTYLDDDYRILWARGSRQQPDASAMPENVYVLRR 243          
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Match: A0A8J6CA72_DIALT (PAP_fibrillin domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CA72_DIALT)

HSP 1 Score: 114 bits (286), Expect = 1.350e-28
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 2
Query:  215 WNLVYTTTAGASGGKLGPFVGEVQQEVDIAEGLYINYVRVGP-----LTGELEATWEVVNKNQWKVVFKTIAFLLWGQQLVK-KELGQAGLWTLSYLDNDMRVLTARSLERDTGNLYVLAR 559
            W LVYT+T+G S GK+GPFVG V+Q  D+ +G Y N+V +GP     +TGEL+ATW+V+    W+V FK+I+F L G  +VK K L Q G W L Y D+D R+L A+   +   N+YVL R
Sbjct:   78 WQLVYTSTSGGSAGKIGPFVGRVEQHFDLRQGRYKNFVHLGPQAIDLVTGELQATWDVLGDALWRVNFKSISFFLLGLPIVKDKPLSQCGTWRLVYTDDDFRILWAQGGTKPE-NIYVLKR 197          
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Match: A0A7S4NCX2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NCX2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 6.350e-25
Identity = 57/124 (45.97%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  212 TWNLVYTTTAGASGGKLGPFVGEVQQEVDIAEGL-----YINYVRVG--PLTGELEATWEVVNKNQWKVVFKTIAFLLWGQQLVKKELGQAGLWTLSYLDNDMRVL-TARSLERDTGNLYVLAR 559
            +W L Y+T  G S GKLGPFVGEV+Q + I EG      YINYVR+G   + G L ATW+V+ +++W+V F ++ F + G  LV+KELG  G+W ++YLD D R+L  A  +     N+Y+LA+
Sbjct:  153 SWKLTYSTNGGTSAGKLGPFVGEVEQLIRI-EGREDSPDYINYVRLGGGAVEGALTATWDVLAEDKWRVKFGSVTFRVLGVPLVEKELGAEGIWRMTYLDEDFRILYAAGGVNVPKENIYILAK 275          
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Match: A0A7S4DWF7_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DWF7_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 1.980e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 2
Query:  212 TWNLVYTTTAGASGGKLGPFVGEVQQEVDIAEGLYINYVRV--GPLTGELEATWEVVNKNQWKVVFKTIAFLLWGQQLVKKELGQAGLWTLSYLDNDMRVLTARS-LERDTGNLYVLAR 559
            +W L+YTT  G+S GK+GPFVG+V Q V++ +G Y+N V +  G   G L ATW+ V+   WKV FK I   L+G  L +KEL   G W ++YLD+D RVL A     ++  N+YVLA+
Sbjct:  130 SWKLLYTTNDGSSAGKIGPFVGDVVQNVELQDGEYVNIVSLANGAFRGVLTATWDNVSDKLWKVKFKDIKLELFGVVLQEKELPATGTWRMTYLDDDFRVLYAMGGKNQEKENVYVLAK 248          
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Match: A0A7S2XW95_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW95_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.890e-23
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  215 WNLVYTTTAGASGGKLGPFVGEVQQEVDIAEGLYINYVRVGPLTGELEATWEVVNKNQWKVVFKTIAFLLWGQQLVKKELGQA--GLWTLSYLDNDMRVLTARSLERDTGNLYVLAR 559
            W+L+YTT  G S GKLGPFVGEV+Q +D+ E  Y+N V VG +   L ATW   N   W V+FK + F L+G  ++ K+   +  G W ++++D++MR+L A S +    N+Y+L R
Sbjct:  115 WDLIYTTNQGNSAGKLGPFVGEVKQIIDLQEDRYVNMVTVGIIEAVLMATWITRNNRNWTVIFKDVTFKLFGIPVISKKFPDSARGDWEMTFMDDNMRILYA-SGKAGVRNIYILGR 230          
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Match: A0A7S1IL70_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IL70_9EUGL)

HSP 1 Score: 99.0 bits (245), Expect = 5.340e-23
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  215 WNLVYTTTAGASGGKLGPFVGEVQQEVDIAEGLYINYVRVGP--LTGELEATWEVVNKNQWKVVFKTIAFLLWGQQLVKKELGQAGLWTLSYLDNDMRVLTARSLER-DTGNLYVLAR 559
            W LVYT+  G+S GKLGPFVG+V Q V    G Y N VR+G   +   L A W+V+   +W+V F+T+ F L+G  L ++EL   G+W ++YLD+ MRVL A   +   T N+Y+LA+
Sbjct:   40 WKLVYTSNQGSSAGKLGPFVGDVFQNVRYENGKYENVVRLGGGIVEAVLGADWDVLEPCKWQVNFRTLKFSLFGATLKEQELKAVGVWRMTYLDDSMRVLWASGGKNVKTENVYILAK 157          
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Match: A0A7S4CQT7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CQT7_9EUGL)

HSP 1 Score: 97.4 bits (241), Expect = 8.910e-21
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  215 WNLVYTTTAGASGGKLGPFVGEVQQEVDIAEGLYINYVRVGPLTGE--LEATWEVVNKNQWKVVFKTIAFLLWGQQLVKKELGQAGLWTLSYLDNDMRVLTARSLER-DTGNLYVLAR 559
            W L+YTT  G S GKLGPFVG+V Q V  + G Y N VR+GP   E  L A W+V+   +W+V F+ I F L+G  + +KE+   G+W ++YLD+ MRVL A   +     N+YVL +
Sbjct:  233 WKLLYTTNTGNSAGKLGPFVGDVFQNVVYSSGKYENIVRLGPGIVEACLGADWDVLGPCKWQVNFRYIRFSLFGNVVSEKEVSNCGVWRMTYLDDSMRVLWASGGKNAKVENVYVLVK 350          
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Match: A0A7S0G154_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G154_9RHOD)

HSP 1 Score: 88.6 bits (218), Expect = 2.080e-18
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 2
Query:  212 TWNLVYTTTAGASGGKLGPFVGEVQQEVDIAEGLYINYVRVGPLTGELEATWEVVNKNQWKVVFKTIAFLLWGQQLVKKEL--GQAGLWTLSYLDNDMRVLTARSLERDTGN-LYVLAR 559
            +W L YT++   S GK+GPFVG+V+Q++D+    + N   +GPL  +L ATW+V++ N + V+F T    L+G  + K     G  G W + Y D D+RVL  +  ++D    L+VL R
Sbjct:   94 SWYLEYTSSISTSSGKVGPFVGQVKQKIDLENRRFENICLLGPLKFDLGATWKVLDDNNFNVLFLTKEISLFGISVQKSPFPDGSGGFWRMGYTDEDLRVLWTKRFQKDKNEMLFVLRR 212          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig77.16636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G6E4_ECTSI2.230e-6787.18PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
K8Z6W7_NANGC1.260e-3151.20PAP_fibrillin domain-containing protein n=3 Tax=Mo... [more]
A0A0G4E8H9_VITBC4.300e-3047.93PAP_fibrillin domain-containing protein n=2 Tax=Vi... [more]
A0A8J6CA72_DIALT1.350e-2848.76PAP_fibrillin domain-containing protein n=2 Tax=Di... [more]
A0A7S4NCX2_9STRA6.350e-2545.97Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4DWF7_9EUKA1.980e-2446.22Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2XW95_9STRA4.890e-2342.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1IL70_9EUGL5.340e-2344.92Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4CQT7_9EUGL8.910e-2144.92Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0G154_9RHOD2.080e-1837.82Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig77contigL-elsbetiae_contig77:36764..37786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog2880.D7G6E4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PAP_fibrillin
EggNOG OGs2DXWT@1,2S6TC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-10_001550.1
Exons3
Model size562
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig77.16636.1prot_L-elsbetiae_contig77.16636.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig77 36764..37213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816855.3000479-CDS-L-elsbetiae_contig77:36763..369721622816855.3000479-CDS-L-elsbetiae_contig77:36763..36972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 36764..36972 +
1691683864.2366505-CDS-L-elsbetiae_contig77:36763..369721691683864.2366505-CDS-L-elsbetiae_contig77:36763..36972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 36764..36972 +
1622816855.3152957-CDS-L-elsbetiae_contig77:37116..372131622816855.3152957-CDS-L-elsbetiae_contig77:37116..37213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 37117..37213 +
1691683864.2480078-CDS-L-elsbetiae_contig77:37116..372131691683864.2480078-CDS-L-elsbetiae_contig77:37116..37213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 37117..37213 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816855.3259385-UTR-L-elsbetiae_contig77:37213..373011622816855.3259385-UTR-L-elsbetiae_contig77:37213..37301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig77 37214..37301 +
1691683864.260183-UTR-L-elsbetiae_contig77:37213..373011691683864.260183-UTR-L-elsbetiae_contig77:37213..37301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig77 37214..37301 +
1622816855.336964-UTR-L-elsbetiae_contig77:37618..377861622816855.336964-UTR-L-elsbetiae_contig77:37618..37786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig77 37619..37786 +
1691683864.2725267-UTR-L-elsbetiae_contig77:37618..377861691683864.2725267-UTR-L-elsbetiae_contig77:37618..37786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig77 37619..37786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig77.16636.1

>prot_L-elsbetiae_contig77.16636.1 ID=prot_L-elsbetiae_contig77.16636.1|Name=mRNA_L-elsbetiae_contig77.16636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
PLLKARAHCALFDLKQAQDLKQTILTEAAGTSNGLKASQQQRDAISKAVN
GLVALNPTKGITTSELATGKNVESSVYYYSRGVRREARAFCGGGAARSRH
C*
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mRNA from alignment at L-elsbetiae_contig77:36764..37786+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig77.16636.1 ID=mRNA_L-elsbetiae_contig77.16636.1|Name=mRNA_L-elsbetiae_contig77.16636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1023bp|location=Sequence derived from alignment at L-elsbetiae_contig77:36764..37786+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTGCTGAAGGCACGCGCACATTGCGCTCTATTTGATTTGAAACAGGC TCAGGATCTTAAGCAGACCATCCTTACAGAGGCTGCAGGAACGTCAAACG GATTGAAAGCCTCGCAGCAGCAACGGGACGCGATCTCCAAAGCGGTCAAC GGTCTAGTCGCTCTTAACCCCACCAAGGGCATCACCACGTCGGAACTCGC CACAGGCAAGTGATTGCGCTGCTCTGCAGCGTACCTGGCACATCAGTGTG CTCATCGCCAAGCGCCCTGTCGAAACTTACGTTTGGCCCGAAACTCGCAC GGAAACATTCGCCGACATATTCACTGCACGTCTCTCAACTTTTCAACCCA CAGGAACGTGGAATCTAGTGTATACTACTACAGCCGGGGCGTCCGGAGGG AAGCTCGGGCCTTTTGTGGGGGAGGTGCAGCAAGAAGTCGACATTGCTGA AGGCCTGTACATAAACTACGTCAGGGTAGGGCCCCTGACCGGCGAGCTCG AAGCGACCTGGGAAGTCGTCAACAAGAATCAGTGGAAGGTGATGGGACAT CGTGTGCGCCGATTCTGGTTCGCCATCCTTGGTATTTAGAGACGTCGATC GGTGTGGCTACGTAGTTGCTACCTCATTTTCATGCGTTAGTGACTTCCGC CTGTTGGGGGCTGTTTTGTTTGTGAGAGGATTGAGAGGTTGGGATGCTGC GTCGACAGCAGTGCGCATCGTGGTGGACTCTTACCTTCCTCAACCCCGAG TCACCAGCAAGGCACTTGCCAAGTCCGTTTCTGCCCCTTTTCTTGCACGC ATACCCTGAGTGCTGCACCATATCATATCGAAGCCAACCTTACACCCAAT GTCAGGTGGTTTTCAAGACGATCGCCTTCTTGCTTTGGGGGCAGCAGCTA GTGAAGAAAGAGCTCGGGCAAGCCGGGTTGTGGACGCTGTCATACCTGGA CAACGACATGCGTGTCTTGACCGCCCGCTCGTTGGAGAGAGACACCGGCA ATCTATACGTGCTCGCCAGGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig77:36764..37786+

>mRNA_L-elsbetiae_contig77.16636.1 ID=mRNA_L-elsbetiae_contig77.16636.1|Name=mRNA_L-elsbetiae_contig77.16636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig77:36764..37786+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTGCTGAAGGCACGCGCACATTGCGCTCTATTTGATTTGAAACAGGC
TCAGGATCTTAAGCAGACCATCCTTACAGAGGCTGCAGGAACGTCAAACG
GATTGAAAGCCTCGCAGCAGCAACGGGACGCGATCTCCAAAGCGGTCAAC
GGTCTAGTCGCTCTTAACCCCACCAAGGGCATCACCACGTCGGAACTCGC
CACAGGCAACCTCTGCTGAAGGCACGCGCACATTGCGCTCTATTTGATTT
GAAACAGGCTCAGGATCTTAAGCAGACCATCCTTACAGAGGCTGCAGGAA
CGTCAAACGGATTGAAAGCCTCGCAGCAGCAACGGGACGCGATCTCCAAA
GCGGTCAACGGTCTAGTCGCTCTTAACCCCACCAAGGGCATCACCACGTC
GGAACTCGCCACAGGCAAGAACGTGGAATCTAGTGTATACTACTACAGCC
GGGGCGTCCGGAGGGAAGCTCGGGCCTTTTGTGGGGGAGGTGCAGCAAGA
AGTCGACATTGCTGAGAACGTGGAATCTAGTGTATACTACTACAGCCGGG
GCGTCCGGAGGGAAGCTCGGGCCTTTTGTGGGGGAGGTGCAGCAAGAAGT
CGACATTGCTGA
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