mRNA_L-elsbetiae_contig7698.16631.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7698.16631.1
Unique NamemRNA_L-elsbetiae_contig7698.16631.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7698.16631.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.750e-5
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 2 
Query:    8 HAEDGMLNVVSKRCTHHGCTKLPSYGKAGSK 100
            H +  M+NVVSKRC H GCTK PSYG+AGSK
Sbjct:   28 HKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7698.16631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE1.750e-570.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7698contigL-elsbetiae_contig7698:6611..8580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size812
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7698.16631.1prot_L-elsbetiae_contig7698.16631.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7698 6633..8510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.396654-UTR-L-elsbetiae_contig7698:6610..66321622816854.396654-UTR-L-elsbetiae_contig7698:6610..6632Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7698 6611..6632 +
1691683863.5164242-UTR-L-elsbetiae_contig7698:6610..66321691683863.5164242-UTR-L-elsbetiae_contig7698:6610..6632Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7698 6611..6632 +
1622816854.432632-UTR-L-elsbetiae_contig7698:8510..85801622816854.432632-UTR-L-elsbetiae_contig7698:8510..8580Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7698 8511..8580 +
1691683863.5446835-UTR-L-elsbetiae_contig7698:8510..85801691683863.5446835-UTR-L-elsbetiae_contig7698:8510..8580Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7698 8511..8580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.4107869-CDS-L-elsbetiae_contig7698:6632..72151622816854.4107869-CDS-L-elsbetiae_contig7698:6632..7215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7698 6633..7215 +
1691683863.5275998-CDS-L-elsbetiae_contig7698:6632..72151691683863.5275998-CDS-L-elsbetiae_contig7698:6632..7215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7698 6633..7215 +
1622816854.421868-CDS-L-elsbetiae_contig7698:8373..85101622816854.421868-CDS-L-elsbetiae_contig7698:8373..8510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7698 8374..8510 +
1691683863.5361626-CDS-L-elsbetiae_contig7698:8373..85101691683863.5361626-CDS-L-elsbetiae_contig7698:8373..8510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7698 8374..8510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7698.16631.1

>prot_L-elsbetiae_contig7698.16631.1 ID=prot_L-elsbetiae_contig7698.16631.1|Name=mRNA_L-elsbetiae_contig7698.16631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=240bp
MLNVVSKRCTHHGCTKLPSYGKAGSKAEYCRDHAEDGMASVASKRCAVPG
CTTRASYGDENAGTREFCARHAEEGMVCLSGRSRGDSKRSDSTDDSGARG
SGTASRAGSGEKQRSRAPAPLPAAEASSGRSRETNRRAHRSAGDGDLDPV
RVKREGIGNRVADDEETRACPEPKGVVKTEDLDVSCKVEPAEGAGDATQA
RKKRRLTTGGGGRDAPESGHRPFVAPAATRRGCAIAGGS*
back to top

mRNA from alignment at L-elsbetiae_contig7698:6611..8580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7698.16631.1 ID=mRNA_L-elsbetiae_contig7698.16631.1|Name=mRNA_L-elsbetiae_contig7698.16631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1970bp|location=Sequence derived from alignment at L-elsbetiae_contig7698:6611..8580+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTGACCATGCCGAGGACGGGATGCTGAACGTCGTCAGCAAGAGATGCA
CCCACCACGGCTGTACCAAGCTGCCGTCATACGGTAAGGCCGGTAGCAAG
GCGGAGTACTGCCGTGACCATGCCGAGGACGGGATGGCGAGCGTGGCCAG
CAAGAGATGTGCCGTTCCTGGGTGCACCACAAGGGCCAGCTACGGCGACG
AAAACGCTGGCACCCGGGAGTTCTGCGCGCGACACGCAGAAGAAGGCATG
GTCTGTCTTTCTGGCCGGTCTAGGGGGGACAGCAAAAGAAGTGACAGTAC
CGATGATTCGGGAGCAAGGGGTAGTGGCACCGCTAGCCGTGCTGGCTCCG
GTGAAAAGCAGAGGAGCCGTGCTCCCGCGCCCCTCCCGGCGGCGGAGGCT
TCCTCAGGAAGGAGCAGGGAGACCAACAGACGAGCCCACCGGAGTGCTGG
CGATGGGGACTTAGATCCGGTTCGGGTGAAAAGAGAGGGGATTGGCAACA
GGGTGGCCGACGACGAGGAAACTAGAGCATGCCCAGAGCCCAAGGGTGTG
GTGAAGACGGAAGACCTGGACGTTTCCTGCAAGGTGGAACCCGCGGAAGG
TGCAGGTGCGTTTCGAACGTGTCTAGTCTAGGCGGCCATCGTCACATCAT
GGCATGTTCGTTGCCGGTGTTTTCTTGTGTAAGCGTGGCAGTTGGTGGCT
TTATCTAGATGTGTTCGACCGGATGAGAGTGGACACCCGGGTATTGTTGA
GCAGCAGTGTTGGAAGTCTCACCTCGGCTGCCGGAAGTATGCGTTTCGTC
AGTATGGTCACGACGTTGTTTTGCACGGAGTTTGGAGAGTGGATCTAAAC
GATCTGTTTGATGGTCCAGCGGGTGGATGTACTCAACTCGGTTTTTAACC
TCAATAAAAAAGGAGATCTCCAAGGTATCCCATCTTGATTGATTTCTAGC
GATATTTTAAACAGGCTGCCCTGGACACAGAATCGGTTTCTACGCAACAA
TCTTGGGCATACATTTGTCAAGATACCGGGCGCCTGTCGTGGCTAGTTCA
ACGAGAACACTCCCCGACCCACCAAAGTGCTTTGAGGGCGTAGATTCCGC
GATAAGAATGCGTGAAAGCGAATTTTTGATGATCGAAGCTGTCGAGGAGA
TGCCTTGCTAACGAACAGCTTTGGTTTCTATGCGTACAGCGGAACGTTGT
GGCTAATAGTGTACGCACATTGCATGCATTCGCTCGTTTGTACTGGTGCC
AGCGCTCGTGTCTTCAATTCTGTTTTTCGATCGGCGACCGCCGAGATATC
ACATCATGTCAACATTCAAACCCTTCGGTGGGAAATTGTGTTGGGGAAGA
AACAGGGAATACTGCTGCTGTTCCAATGAGAGACAGCATATGGCTCCTTG
GTGTGCTTTTCACAGCAGTGGTTGGTCCGTTGTGGCTTGTGTTTTCCTAG
GTTTGCCCTACCTCGCCATGTTTTCCCGGGATCTCTCGCCGTCCGCGGTC
CAAGGTGGTTCGTTCCACCTGGCTCTGCTCGGAAGACAATGATTTCCCAA
ATGCCCACATATTTAGCATGAAGGCGACAAAGATGTATCGCGATCGTGTT
GTCGCATCACCCATCCCAGTGACAAGCAACCGCCAGACTGCCCCCAACGA
TCTCCTTTGCTCTCTTTTGTGCACAACCCGTGTCGTTCTGTTGGTAGCGT
ATCATCGCCCTCTAGCGTATGCGTCTCACGTCCCCCCCCCCCTCCTCCAA
TCCAAACACACAGGCGATGCTACACAAGCGAGGAAGAAGCGGAGATTGAC
CACGGGAGGGGGCGGCCGCGATGCTCCTGAATCCGGACATCGCCCTTTTG
TAGCACCGGCAGCAACACGCCGAGGTTGCGCTATCGCCGGCGGGTCGTGA
CATTTGTGCGAGGCGGCCACGTACGGCTGCAGTATAGCGAGACCGCCACC
AATTGCGCACGGGGTGCCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7698:6611..8580+

>mRNA_L-elsbetiae_contig7698.16631.1 ID=mRNA_L-elsbetiae_contig7698.16631.1|Name=mRNA_L-elsbetiae_contig7698.16631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1440bp|location=Sequence derived from alignment at L-elsbetiae_contig7698:6611..8580+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGAACGTCGTCAGCAAGAGATGCACCCACCACGGCTGTACCAAGCT
GCCGTCATACGGTAAGGCCGGTAGCAAGGCGGAGTACTGCCGTGACCATG
CCGAGGACGGGATGGCGAGCGTGGCCAGCAAGAGATGTGCCGTTCCTGGG
TGCACCACAAGGGCCAGCTACGGCGACGAAAACGCTGGCACCCGGGAGTT
CTGCGCGCGACACGCAGAAGAAGGCATGGTCTGTCTTTCTGGCCGGTCTA
GGGGGGACAGCAAAAGAAGTGACAGTACCGATGATTCGGGAGCAAGGGGT
AGTGGCACCGCTAGCCGTGCTGGCTCCGGTGAAAAGCAGAGGAGCCGTGC
TCCCGCGCCCCTCCCGGCGGCGGAGGCTTCCTCAGGAAGGAGCAGGGAGA
CCAACAGACGAGCCCACCGGAGTGCTGGCGATGGGGACTTAGATCCGGTT
CGGGTGAAAAGAGAGGGGATTGGCAACAGGGTGGCCGACGACGAGGAAAC
TAGAGCATGCCCAGAGCCCAAGGGTGTGGTGAAGACGGAAGACCTGGACG
TTTCCTGCAAGGTGGAACCCGCGGAAGGTGCAGATGCTGAACGTCGTCAG
CAAGAGATGCACCCACCACGGCTGTACCAAGCTGCCGTCATACGGTAAGG
CCGGTAGCAAGGCGGAGTACTGCCGTGACCATGCCGAGGACGGGATGGCG
AGCGTGGCCAGCAAGAGATGTGCCGTTCCTGGGTGCACCACAAGGGCCAG
CTACGGCGACGAAAACGCTGGCACCCGGGAGTTCTGCGCGCGACACGCAG
AAGAAGGCATGGTCTGTCTTTCTGGCCGGTCTAGGGGGGACAGCAAAAGA
AGTGACAGTACCGATGATTCGGGAGCAAGGGGTAGTGGCACCGCTAGCCG
TGCTGGCTCCGGTGAAAAGCAGAGGAGCCGTGCTCCCGCGCCCCTCCCGG
CGGCGGAGGCTTCCTCAGGAAGGAGCAGGGAGACCAACAGACGAGCCCAC
CGGAGTGCTGGCGATGGGGACTTAGATCCGGTTCGGGTGAAAAGAGAGGG
GATTGGCAACAGGGTGGCCGACGACGAGGAAACTAGAGCATGCCCAGAGC
CCAAGGGTGTGGTGAAGACGGAAGACCTGGACGTTTCCTGCAAGGTGGAA
CCCGCGGAAGGTGCAGGCGATGCTACACAAGCGAGGAAGAAGCGGAGATT
GACCACGGGAGGGGGCGGCCGCGATGCTCCTGAATCCGGACATCGCCCTT
TTGTAGCACCGGCAGCAACACGCCGAGGTTGCGCTATCGCCGGCGGGTCG
TGAGCGATGCTACACAAGCGAGGAAGAAGCGGAGATTGACCACGGGAGGG
GGCGGCCGCGATGCTCCTGAATCCGGACATCGCCCTTTTGTAGCACCGGC
AGCAACACGCCGAGGTTGCGCTATCGCCGGCGGGTCGTGA
back to top