mRNA_L-elsbetiae_contig7690.16624.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7690.16624.1
Unique NamemRNA_L-elsbetiae_contig7690.16624.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7690.16624.1 vs. uniprot
Match: D7FQH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH0_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.010e-31
Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = 1 
Query:  367 GGSGAVEGAFFSSSAPIELGGTRRGNYRYVRLLDVDSEESFQAVLVACERVGSYRVVGWCKRRWLMDILFECRRDAMAAIDDIEHLDLISTRLGRPIKVLVKPADFEAGFS 699
            GG     G++F S    +    +R + RYVR+LD+DS+  +QAVL AC+RVGS+RVVGWCKRRWLMDILFE RRDA AA+DDI+HL L S+R  RPIK L+KPA F+ GF+
Sbjct:   33 GGHEVDRGSYFVSRPSPKASLDQRDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFDGGFT 143
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BLAST of mRNA_L-elsbetiae_contig7690.16624.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.150e-31
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:  367 GGSGAVEGAFFSSSAPIELGGTRRGNYRYVRLLDVDSEESFQAVLVACERVGSYRVVGWCKRRWLMDILFECRRDAMAAIDDIEHLDLISTRLGRPIKVLVKPADFEAGFS 699
            GG     G++F S    +    +R + RYVR+LD+DS+  +QAVL AC+RVGS+RVVGWCKRRWLMDILFE RRDA AA+DDI+HL L S+R  RPIK L+KPA F  GFS
Sbjct: 1065 GGHEVDRGSYFVSRPSPKASFDQRDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFNGGFS 1175
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7690.16624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQH0_ECTSI1.010e-3159.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1S2_9PHAE1.150e-3160.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7690contigL-elsbetiae_contig7690:4004..7931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size758
Cds size756
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7690.16624.1prot_L-elsbetiae_contig7690.16624.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7690 4005..7931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.0391936-CDS-L-elsbetiae_contig7690:4004..41001622816854.0391936-CDS-L-elsbetiae_contig7690:4004..4100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 4005..4100 -
1691683863.265974-CDS-L-elsbetiae_contig7690:4004..41001691683863.265974-CDS-L-elsbetiae_contig7690:4004..4100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 4005..4100 -
1622816854.049796-CDS-L-elsbetiae_contig7690:4608..46811622816854.049796-CDS-L-elsbetiae_contig7690:4608..4681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 4609..4681 -
1691683863.2775743-CDS-L-elsbetiae_contig7690:4608..46811691683863.2775743-CDS-L-elsbetiae_contig7690:4608..4681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 4609..4681 -
1622816854.0611339-CDS-L-elsbetiae_contig7690:5843..59921622816854.0611339-CDS-L-elsbetiae_contig7690:5843..5992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 5844..5992 -
1691683863.287316-CDS-L-elsbetiae_contig7690:5843..59921691683863.287316-CDS-L-elsbetiae_contig7690:5843..5992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 5844..5992 -
1622816854.0733268-CDS-L-elsbetiae_contig7690:6866..70281622816854.0733268-CDS-L-elsbetiae_contig7690:6866..7028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 6867..7028 -
1691683863.2986324-CDS-L-elsbetiae_contig7690:6866..70281691683863.2986324-CDS-L-elsbetiae_contig7690:6866..7028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 6867..7028 -
1622816854.085189-CDS-L-elsbetiae_contig7690:7655..79311622816854.085189-CDS-L-elsbetiae_contig7690:7655..7931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 7656..7931 -
1691683863.3079107-CDS-L-elsbetiae_contig7690:7655..79311691683863.3079107-CDS-L-elsbetiae_contig7690:7655..7931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 7656..7931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7690.16624.1

>prot_L-elsbetiae_contig7690.16624.1 ID=prot_L-elsbetiae_contig7690.16624.1|Name=mRNA_L-elsbetiae_contig7690.16624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
SAAVDAAAAAAAAAAAAAAAASQVSIDDREFGAVDSPRVGGGRDRGTARQ
LPSPSDRRASADGPSGPAAATAAAGEEGTAGAKGRGCGLPAQACYSSEGG
SEREATLSAFHLSDGSPASSAGGGSGAVEGAFFSSSAPIELGGTRRGNYR
YVRLLDVDSEESFQAVLVACERVGSYRVVGWCKRRWLMDILFECRRDAMA
AIDDIEHLDLISTRLGRPIKVLVKPADFEAGFSAASVTGVSLAPAAAAVT
PS
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mRNA from alignment at L-elsbetiae_contig7690:4004..7931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7690.16624.1 ID=mRNA_L-elsbetiae_contig7690.16624.1|Name=mRNA_L-elsbetiae_contig7690.16624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3928bp|location=Sequence derived from alignment at L-elsbetiae_contig7690:4004..7931- (Laminarionema elsbetiae ELsaHSoW15)
AGCGCCGCCGTAGATGCTGCCGCGGCGGCGGCGGCGGCAGCGGCGGCGGC
GGCGGCGGCGGCGTCGCAGGTCTCGATAGACGATCGCGAGTTCGGGGCCG
TAGACTCGCCGCGCGTCGGTGGTGGCCGGGACCGAGGCACGGCCCGGCAG
TTGCCGTCGCCATCCGACAGGAGGGCTTCGGCTGATGGCCCTTCGGGGCC
TGCCGCCGCCACCGCCGCCGCGGGAGAGGAGGGCACGGCGGGGGCGAAAG
GACGGGGCTGTGGCTTGCCGGCTCAGGTACGTGCGTGTGTGTGCGCGCGC
GCGGCGCATGGAGGGTTTCGCTGGTGGTCGGTTCGGTTCGTGCATGCGGT
GCCGGCGGGTCTCGTATAACGTAACCGTGATTTGTGATTTGTTGTTCGCT
TTTGGTAACAGGGTCGTAGAGGGTCGGAAGTTGGTGCTGCGTGCGGACGT
TGCAATCGTGTGGTGTGCCCGTTGCTCTCTCCCCGTGCCTTCCTTCCGGC
ACCTCTGTTTGCTCTTTCTCTTTCCGATGCTTGTAGTCGTCGGACAGGCA
GGCGCGTTCCGCTTGCCTCTTCGCCTCGTGGCAGCTCTCAACGTCTTCCT
CTGCACATATGCATGGCCTGATCTCGGAAGTTGGTCGGGGGCGACTGCTT
TGCCGTCGATCTGCTGCAATGTGCACAACCTACCTGAGTGCGTGCGTAGC
TGCGACACACAAAAAAAAACACACACTCAGGAATTCCAGAGCAAATTAAA
ATTTCAGGCATGATGCAAGAGAACGTGCTCCTCCGTCTGCCGGCCAGACC
CGCTTTTGATCTCAAGACCTGGAGTTGCTTGATTTCTAAACGAAACAACC
TCAACCGACCAACCGACCAATCGCCCCTTTGGGATGGGCCCATGGCAAAG
CAGGCTTGCTACAGCTCCGAGGGAGGAAGCGAGCGAGAGGCGACTCTGTC
CGCTTTCCATCTCTCGGACGGGTCGCCGGCCAGCTCTGCCGGCGGGGGCA
GCGGCGCCGTGGAGGGAGCGTTTTTTTCCTCGAGCGCGCCAATCGAGCTC
GGTGGAACCAGACGGGTGAGCGAAAACCCCGGTCGGGGCGTACTGCCGCT
TGTAGCAAGTAGCTGAAGCGGCTGATTCCCCTACATTCGATTGAGCGGGT
GCTCGGGGCAGGGGGCGGGTGGTCTGCCGGACTGGGTGGAACTCTTGCTT
AGGGAGTTTTTGGCGCGGGGGACATGTGCATACATAGTCATTGGAACAAG
GGTAGGTGTAAATACCAAGAGTGTAAGTGGGAACCTTTTCTTAGCGCTTG
ATACATACATACATACATACATATAGGGTCACTGAAAATACCGTTGGTGT
TTTGATTCGGTTGGGATCCTGCCGCAGACACCACGAAAAAAGAGCACTAG
ACACCTTGCTGCACAGCTGTTGCTCTACGCGCGGGCCGCGGGGGCAGTCG
TCACAGCCACTATGCTACGTACCCCACTCACACTCTCGAGTGTTTTTGTG
ACACGCCGTCTCTCCCTTCTTTTTTTCAGTTTCCATCGTTACATATGTGA
GCGTTTCCCGTCGGCGTCGATGGCTTTTCTTTTTCTTCAGTAATAAACGT
CGTCCAACCTACGATTAAAGAGACTTACCAGGGCAGCTCTGTTGGTGACA
CACTATCCCCATTTACCCCCCCCCTTACCATGGTTCGTATCGTTTTTTTG
GGGTGTGTTGCTTGGTGTTTTTTTTTTTTTGTTTTTCACGTTTATTTCCA
GTGCTCGATGGGCTCCCTTGGCCACGAGGGCATCTTGCCAGAGCACTGAA
CCGTGGTCACACAAAAGGGTTCCTTTTTGGGGTTGTATGTTGTTTTTAAC
GTATCGGGTATGTATCTTTGATGAGCCGATCTTCGTTTATCATTTCACCC
TGCATCTATCCGATCTTCGTTTTTTGTTTTTTGTGGAAGGGCAATTACCG
GTACGTCCGGCTGCTGGATGTCGACTCGGAGGAGTCGTTCCAAGCGGTGC
TGGTCGCGTGCGAGCGCGTCGGCAGCTACAGGGTGGTCGGGTGGTGCAAG
CGGCGGTGGCTGATGGACATACTCTTCGAGTGCCGAAGGTGGGTGCGGCT
TCGGAATACCAGCAGCAGCTGAAGCAGCAGCAGCAGCACCAAGCACCAGC
ACGCAGCGCTATCACTCCATATTGTCGCGTTTGGGTCATTTCTCTAGAAG
CCAAACGCGGTCGCGGTACCAACGCGTCTGCTTGTGACCGAAATATGCTT
TTTATGACTGTATGTACAATACCGTAGGTGACACAAGATACCACGCCCCC
TGGACCGAATTTTAGAGCTCCATTATTCCGTAACGAATAGGGTGCCAGCA
CCAAACGGCACATTTTCGGACAACTCTCGACTAGACCGTCTCAACGCCAG
TTCTTTCGGCACTGAGACTCTTCTTGTTGGGGAGAAGTCGAGCTTTGAAA
ATCCGTCCAGGGGGTGTGGTATCTTATGTCACCTACGATAGGCCGATCGT
AAAACGGGTTGACTTTTCACAGGGCAGATACATACATGAACGACTGGCTG
GCTCGATATTCCTCAGACGAGATTAAGGTTGATCTAGAGAGACAGAGGAG
TTGTGTGCCATTTGTTTCTCGTCTTAAAAAAGCGTCCCAACGCGTGGCCC
ACGATCAAAAAAGACCACACCGGCAGCAAAACACTGAGCCCTTTCTTCTC
CCCCGGTTCTGACGGTGGGTACACCCGGTTCGCCCCCCGCCGCATCCCCG
GCCGTCAACTTTGGCATCGAAAATGATAACATGCAGAATAATGTTTCTGG
TTTAAATTGCTGTTGGTAATTGTTGTCCGCGTAAATACACAGTCTAGCAC
TCAGCAAAAGTGTCATTTGCAGTGTTGTAACAACTTTCTTTTTCGTCCCT
GTCGCCAGTGGATAACGCTTGGCGTGATTACACAAACAAACTTCGACCTC
ACCCGTCGACGAGGGGGAGGGACGGCTGAACCCTTCCCGCGACAAAAACC
TTAGGCAAGCACCGCAGAAGGGGGGAGTGGGGGCCTCGGGGAGAGGATCC
CTCCTGTGTGACCACGGTTCAGTACTCTGGCAAGGTGCCCTCGTGGCAGG
GAGCCAGCCCATCGAGCACTGAAAATAGATACATGTGAAGAAAAAAAAAA
CAGCGGTGCCGTTCGCCTATTAATTAATTAGTCAATTACTTAATTTGTCT
CTTTGTTGTCCTAATCATGTACATCGTTGACGGAATCGTCAATCATCCAG
GGACGCCATGGCCGCAATCGACGACATCGAACACCTCGACCTCATAAGCA
CCCGCCTCGGCAGGCCCATCAAGGTATGTCTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTCGCCGTCGCCGTCGCTGCTGTTTTTCCTACTGTAGCTCTC
TATGTAGCCCGAAAAATCATCCGTGGGGGTTTCGTGGTCACAAAACAGGG
TTCACTCGACGCCACAGAGATAAATAAAGAGCAGGAAAATATAGGTGTCG
CAGCAGGTGTGTAACACCAGAAGGGGGTGCTTCTTTGTGTTTATTCGCTC
GCTCTCATATTACGGAAGCTGGTTTTGTATGCCAATTTTCGAGAGTTGTT
GCAGGTTCTCGTCTCTTCGTCTTGGGTAGGTACGCGCTCGTGGTTCTTTG
CAAAAAAAGGGGTCGCAGTCGTTGGGCAGGAGAAAAAAATATGGAAACGG
CTCTGAATCGATCGCCAATTTGACTGCGGTCGGTCTTATTTTGATCAAGA
TGCGGCAGTGCCATCGAAGGTACATGGGAGAGTTGTGACTCCCCGCCGCC
GCTTCATACCCCCCTCGTCCTTCCCTCGCAGGTCCTCGTCAAGCCGGCCG
ACTTCGAAGCCGGGTTTTCGGCGGCCTCTGTCACGGGCGTGTCCCTGGCA
CCAGCCGCAGCGGCGGTGACGCCGTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7690:4004..7931-

>mRNA_L-elsbetiae_contig7690.16624.1 ID=mRNA_L-elsbetiae_contig7690.16624.1|Name=mRNA_L-elsbetiae_contig7690.16624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig7690:4004..7931- (Laminarionema elsbetiae ELsaHSoW15)
AGCGCCGCCGTAGATGCTGCCGCGGCGGCGGCGGCGGCAGCGGCGGCGGC
GGCGGCGGCGGCGTCGCAGGTCTCGATAGACGATCGCGAGTTCGGGGCCG
TAGACTCGCCGCGCGTCGGTGGTGGCCGGGACCGAGGCACGGCCCGGCAG
TTGCCGTCGCCATCCGACAGGAGGGCTTCGGCTGATGGCCCTTCGGGGCC
TGCCGCCGCCACCGCCGCCGCGGGAGAGGAGGGCACGGCGGGGGCGAAAG
GACGGGGCTGTGGCTTGCCGGCTCAGAGCGCCGCCGTAGATGCTGCCGCG
GCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGTCGCAGGTCTC
GATAGACGATCGCGAGTTCGGGGCCGTAGACTCGCCGCGCGTCGGTGGTG
GCCGGGACCGAGGCACGGCCCGGCAGTTGCCGTCGCCATCCGACAGGAGG
GCTTCGGCTGATGGCCCTTCGGGGCCTGCCGCCGCCACCGCCGCCGCGGG
AGAGGAGGGCACGGCGGGGGCGAAAGGACGGGGCTGTGGCTTGCCGGCTC
AGGCTTGCTACAGCTCCGAGGGAGGAAGCGAGCGAGAGGCGACTCTGTCC
GCTTTCCATCTCTCGGACGGGTCGCCGGCCAGCTCTGCCGGCGGGGGCAG
CGGCGCCGTGGAGGGAGCGTTTTTTTCCTCGAGCGCGCCAATCGAGCTCG
GTGGAACCAGACGGGCTTGCTACAGCTCCGAGGGAGGAAGCGAGCGAGAG
GCGACTCTGTCCGCTTTCCATCTCTCGGACGGGTCGCCGGCCAGCTCTGC
CGGCGGGGGCAGCGGCGCCGTGGAGGGAGCGTTTTTTTCCTCGAGCGCGC
CAATCGAGCTCGGTGGAACCAGACGGGGCAATTACCGGTACGTCCGGCTG
CTGGATGTCGACTCGGAGGAGTCGTTCCAAGCGGTGCTGGTCGCGTGCGA
GCGCGTCGGCAGCTACAGGGTGGTCGGGTGGTGCAAGCGGCGGTGGCTGA
TGGACATACTCTTCGAGTGCCGAAGGGCAATTACCGGTACGTCCGGCTGC
TGGATGTCGACTCGGAGGAGTCGTTCCAAGCGGTGCTGGTCGCGTGCGAG
CGCGTCGGCAGCTACAGGGTGGTCGGGTGGTGCAAGCGGCGGTGGCTGAT
GGACATACTCTTCGAGTGCCGAAGGGACGCCATGGCCGCAATCGACGACA
TCGAACACCTCGACCTCATAAGCACCCGCCTCGGCAGGCCCATCAAGGGA
CGCCATGGCCGCAATCGACGACATCGAACACCTCGACCTCATAAGCACCC
GCCTCGGCAGGCCCATCAAGGTCCTCGTCAAGCCGGCCGACTTCGAAGCC
GGGTTTTCGGCGGCCTCTGTCACGGGCGTGTCCCTGGCACCAGCCGCAGC
GGCGGTGACGCCGTCCGTCCTCGTCAAGCCGGCCGACTTCGAAGCCGGGT
TTTCGGCGGCCTCTGTCACGGGCGTGTCCCTGGCACCAGCCGCAGCGGCG
GTGACGCCGTCC
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