mRNA_L-elsbetiae_contig7688.16622.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7688.16622.1
Unique NamemRNA_L-elsbetiae_contig7688.16622.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5JBV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.350e-12
Identity = 54/129 (41.86%), Postives = 66/129 (51.16%), Query Frame = 1
Query:   34 GRSAPPADRFVSLDEPSPADGKVDREITSRIRRAI-CFRRHDEAMYDRRRIDRRLKA-----------GPSKPVQTGCEENYTRGRHRAHDKARETHSSLGLRTEDDRLRKRVLLGTMAQGQGLSGRAE 384
            G++    DRFV L     ADGK DREITSR  RA  C+RR+  +MYDRRR DR+LK              +  +Q  CEE           K R   +   +R ED+RL KR+LLG MA G G  G  E
Sbjct:  709 GQTYKQRDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLPQAETALSYAQALIIQADCEETIKA----TVRKQRLCFAGFVMRMEDNRLPKRMLLGAMAGGGGYRGGQE 833          
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5JUJ6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.570e-10
Identity = 63/170 (37.06%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   34 GRSAPPADRFVSLDEPSPADGKVDREITSRIRRAI-CFRRHDEAMYDRRRIDRRLKAG--PSKPVQT---GCE------ENYTR--GRHR-------------------AHD-----------------KARETHSSLGLRTEDDRLRKRVLLGTMAQGQGLSGRAEERV 393
            G++    DRFV L     ADGK DREITSR  RA  C+RR+  +MYDRRR DR+L+     ++ V+T   GC       E YT+  G HR                   +H                  K R   +   +R ED+RL KR+LLG MA G+G+ GRA ER+
Sbjct:  162 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLQIRLLQAQVVETLLYGCASWSLTAERYTKLNGTHRQFLTWCIGWSKRKRSDRPMSHAPALIQAGCEETIEATVRKRRLCFAGFVIRMEDNRLPKRMLLGAMAGGRGIPGRAGERL 331          
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.100e-10
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKGKVGEW---------FRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEA 574
            G+RGGQ+S+ WV+R G  L  V  G +++ + G W         +  ++EDG AWFM KWH +EAEASAKRQ ARGAEA
Sbjct:  411 GYRGGQESD-WVYRLGEDL--VAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKRQRARGAEA 486          
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L6H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.870e-10
Identity = 42/81 (51.85%), Postives = 49/81 (60.49%), Query Frame = 2
Query:  365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKG-------KVGEWFRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEAASIA 586
            G+RGGQ+S+ WV R G  L     G  K+G       K  E +  +VEDG AWFM KWH +E EASAKRQ AR AEA S A
Sbjct:   22 GYRGGQESD-WVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRKWHMQEKEASAKRQRAREAEAESTA 101          
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L863_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L863_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.190e-9
Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKGKVGEW---------FRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEA 574
            G+RGGQ+S+ WV R G  L     G  K+G  G+W         +  +VEDG AWFM +WH +EAEASAKRQ AR AEA
Sbjct:   20 GYRGGQESD-WVSRLGEDLVAFNMGDEKEG--GKWKESAKDPEVWCNKVEDGAAWFMRRWHRQEAEASAKRQRAREAEA 95          
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.390e-9
Identity = 42/81 (51.85%), Postives = 49/81 (60.49%), Query Frame = 2
Query:  365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKG-------KVGEWFRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEAASIA 586
            G+RGGQ+S+ WV R G  L     G  K+G       K  E +  +VEDG AWFM KWH +EAEASAKRQ AR AE  S A
Sbjct:  101 GYRGGQESD-WVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEVESTA 180          
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L3I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.070e-9
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKGKVGEW---------FRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEAASIA 586
            G+RGGQ+S+ WV R G  L     G  K+G  GEW         +  +VED  AW M KWH +EAEASAKRQ  R AEAA +A
Sbjct:    6 GYRGGQESD-WVSRLGEDLVAFNMGDEKEG--GEWKDSAKDPEVWYNKVEDVAAWLMRKWHRQEAEASAKRQRMRAAEAALVA 85          
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L3X1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.770e-9
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKGKVGEW---------FRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEA 574
            G+RGGQ+S+ WV+R G  L  V  G +++ + G W         +  ++EDG AWFM KWH +EAEAS KRQ AR AEA
Sbjct:  144 GYRGGQESD-WVYRLGEDL--VAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHKQEAEASTKRQRAREAEA 219          
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L6D4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.910e-9
Identity = 49/118 (41.53%), Postives = 57/118 (48.31%), Query Frame = 1
Query:   34 GRSAPPADRFVSLDEPSPADGKVDREITSRIRRAI-CFRRHDEAMYDRRRIDRRLKAGPSKPVQTGCEENYTRGRHRAHDKARETHSSLGLRTEDDRLRKRVLLGTMAQGQGLSGRAE 384
            G++    DRFV L     ADGK DREITSR  RA  C+RR+   MYDRRR +R             CEE           K R   +   +R  D RL KR+LLG MA G G  G  E
Sbjct:   61 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNIALMYDRRRANR-------------CEETIEA----TVRKRRLCFAGFVMRMGDSRLPKRMLLGAMAGGMGYRGGQE 161          
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L172_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L172_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.440e-9
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  365 GFRGGQKSE*WVFRPGRRLCGVWH-GRRKKGKVGEW---------FRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEA 574
            G+RGGQ+S+ WV R G  L   ++ G  K+G  G+W         +  +VEDG AWFM KWH +EAEASAKRQ AR AEA
Sbjct:   90 GYRGGQESD-WVSRLGEDLVAFFNMGDEKEG--GKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEA 166          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBV2_9PHAE9.350e-1241.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUJ6_9PHAE1.570e-1037.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LD24_9PHAE3.100e-1050.63Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6H8_9PHAE4.870e-1051.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L863_9PHAE1.190e-950.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNV8_9PHAE1.390e-951.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3I2_9PHAE2.070e-949.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3X1_9PHAE3.770e-948.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L6D4_9PHAE3.910e-941.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L172_9PHAE4.440e-951.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7688contigL-elsbetiae_contig7688:2123..2931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size596
Cds size594
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.8270347-CDS-L-elsbetiae_contig7688:2122..25181622816853.8270347-CDS-L-elsbetiae_contig7688:2122..2518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7688 2123..2518 -
1691683863.1170757-CDS-L-elsbetiae_contig7688:2122..25181691683863.1170757-CDS-L-elsbetiae_contig7688:2122..2518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7688 2123..2518 -
1622816853.8441486-CDS-L-elsbetiae_contig7688:2733..29311622816853.8441486-CDS-L-elsbetiae_contig7688:2733..2931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7688 2734..2931 -
1691683863.129252-CDS-L-elsbetiae_contig7688:2733..29311691683863.129252-CDS-L-elsbetiae_contig7688:2733..2931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7688 2734..2931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7688.16622.1prot_L-elsbetiae_contig7688.16622.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7688 2123..2931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7688.16622.1

>prot_L-elsbetiae_contig7688.16622.1 ID=prot_L-elsbetiae_contig7688.16622.1|Name=mRNA_L-elsbetiae_contig7688.16622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
CPAITGLYRKKGRSAPPADRFVSLDEPSPADGKVDREITSRIRRAICFRR
HDEAMYDRRRIDRRLKAGPSKPVQTGCEENYTRGRHRAHDKARETHSSLG
LRTEDDRLRKRVLLGTMAQGQGLSGRAEERVMGVPPREKTLWRLAWKTKK
RKSGRVVSAKGRGRGGVVYGEVACTGSRSLCEAPIREGGGGGEHCRC*
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mRNA from alignment at L-elsbetiae_contig7688:2123..2931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7688.16622.1 ID=mRNA_L-elsbetiae_contig7688.16622.1|Name=mRNA_L-elsbetiae_contig7688.16622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=809bp|location=Sequence derived from alignment at L-elsbetiae_contig7688:2123..2931- (Laminarionema elsbetiae ELsaHSoW15)
TGTCCGGCGATCACGGGACTGTACCGAAAAAAGGGTCGAAGTGCCCCCCC CGCGGATCGTTTCGTCTCCTTGGACGAACCATCACCCGCGGACGGAAAGG TGGACAGGGAGATCACGAGCCGTATCCGCCGAGCGATTTGCTTTCGCCGC CATGACGAAGCGATGTATGACAGGCGTCGAATCGATCGCCGGCTCAAGGT TCGGCTACTACTCTATATTGTAGGCCGATTTGGTGGAGACACTCATCATG TAATCTAGATATTTATGGGCGCGCCTCTCTCTGTCTTACGTATTGCAGTA CTGCTGTAGATCACCTCACCAATCTCAACAGGACCCGCCGCTAGCTTCTC ACACGGTGCATATGTTGGAGCAAGCAGAAACGCGCGGACCGCTCTCCTGC CCTACGTCCCCAGGCCGGCCCTTCTAAACCAGTCCAAACAGGCTGCGAGG AAAACTATACCCGAGGGCGCCACCGTGCGCACGACAAAGCCCGCGAAACA CACAGCAGCCTCGGTTTGCGCACGGAGGACGATCGCCTCCGCAAGCGCGT TCTGCTTGGAACGATGGCGCAGGGACAAGGGCTTTCGGGGCGGGCAGAAG AGCGAGTGATGGGTGTTCCGCCCAGGGAGAAGACTTTGTGGCGTTTGGCA TGGAAGACGAAAAAAAGGAAAAGTGGGAGAGTGGTTTCGGCAAAGGGTCG AGGACGGGGTGGCGTGGTTTATGGGGAAGTGGCATGCACGGGAAGCAGAA GCCTCTGCGAAGCGCCAATTCGCGAGGGGGGCGGAGGCGGCGAGCATTGC CGCTGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7688:2123..2931-

>mRNA_L-elsbetiae_contig7688.16622.1 ID=mRNA_L-elsbetiae_contig7688.16622.1|Name=mRNA_L-elsbetiae_contig7688.16622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig7688:2123..2931- (Laminarionema elsbetiae ELsaHSoW15)
TGTCCGGCGATCACGGGACTGTACCGAAAAAAGGGTCGAAGTGCCCCCCC
CGCGGATCGTTTCGTCTCCTTGGACGAACCATCACCCGCGGACGGAAAGG
TGGACAGGGAGATCACGAGCCGTATCCGCCGAGCGATTTGCTTTCGCCGC
CATGACGAAGCGATGTATGACAGGCGTCGAATCGATCGCCGGCTCAAGTG
TCCGGCGATCACGGGACTGTACCGAAAAAAGGGTCGAAGTGCCCCCCCCG
CGGATCGTTTCGTCTCCTTGGACGAACCATCACCCGCGGACGGAAAGGTG
GACAGGGAGATCACGAGCCGTATCCGCCGAGCGATTTGCTTTCGCCGCCA
TGACGAAGCGATGTATGACAGGCGTCGAATCGATCGCCGGCTCAAGGCCG
GCCCTTCTAAACCAGTCCAAACAGGCTGCGAGGAAAACTATACCCGAGGG
CGCCACCGTGCGCACGACAAAGCCCGCGAAACACACAGCAGCCTCGGTTT
GCGCACGGAGGACGATCGCCTCCGCAAGCGCGTTCTGCTTGGAACGATGG
CGCAGGGACAAGGGCTTTCGGGGCGGGCAGAAGAGCGAGTGATGGGTGTT
CCGCCCAGGGAGAAGACTTTGTGGCGTTTGGCATGGAAGACGAAAAAAAG
GAAAAGTGGGAGAGTGGTTTCGGCAAAGGGTCGAGGACGGGGTGGCGTGG
TTTATGGGGAAGTGGCATGCACGGGAAGCAGAAGCCTCTGCGAAGCGCCA
ATTCGCGAGGGGGGCGGAGGCGGCGAGCATTGCCGCTGCTGAGCCGGCCC
TTCTAAACCAGTCCAAACAGGCTGCGAGGAAAACTATACCCGAGGGCGCC
ACCGTGCGCACGACAAAGCCCGCGAAACACACAGCAGCCTCGGTTTGCGC
ACGGAGGACGATCGCCTCCGCAAGCGCGTTCTGCTTGGAACGATGGCGCA
GGGACAAGGGCTTTCGGGGCGGGCAGAAGAGCGAGTGATGGGTGTTCCGC
CCAGGGAGAAGACTTTGTGGCGTTTGGCATGGAAGACGAAAAAAAGGAAA
AGTGGGAGAGTGGTTTCGGCAAAGGGTCGAGGACGGGGTGGCGTGGTTTA
TGGGGAAGTGGCATGCACGGGAAGCAGAAGCCTCTGCGAAGCGCCAATTC
GCGAGGGGGGCGGAGGCGGCGAGCATTGCCGCTGCTGA
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