mRNA_L-elsbetiae_contig7680.16616.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7680.16616.1
Unique NamemRNA_L-elsbetiae_contig7680.16616.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Match: A0A3G5FPL8_9PHAE (Ribosomal protein S10 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPL8_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.960e-45
Identity = 74/100 (74.00%), Postives = 87/100 (87.00%), Query Frame = 1
Query:    1 MSLKKKTYICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRSPLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFR 300
            M LK+KTYICEVWSSS DLKSLK+W LLLPLSR  T LSTKIKRFTL+RSPLGNK+SKDQFER+EYRSYFSF+S+   K+L +L++LKYS+ V SK+ FR
Sbjct:    1 MCLKQKTYICEVWSSSTDLKSLKLWLLLLPLSRPSTALSTKIKRFTLLRSPLGNKRSKDQFERREYRSYFSFKSKRPSKVLAVLEVLKYSNDVKSKIQFR 100          
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Match: A0A089MX90_PETFA (Ribosomal protein S10 n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089MX90_PETFA)

HSP 1 Score: 140 bits (352), Expect = 3.860e-41
Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 1
Query:   10 KKKTYICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRSPLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFR 300
            KK  Y+C+VWS+S DLKSLK W LLLPL++ CTGLSTKIKRFTL+RSPLGNK +KDQFE+KEYRSY SF+S++  KIL +LDIL+YS+GV  KVL +
Sbjct:    6 KKTIYLCKVWSASTDLKSLKYWSLLLPLAKQCTGLSTKIKRFTLLRSPLGNKTAKDQFEKKEYRSYLSFKSKNPSKILALLDILRYSTGVKLKVLVK 102          
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Match: A0A2H4ZR19_9PHAE (Ribosomal protein S10 n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZR19_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.210e-39
Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    4 SLKKKTYICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRSPLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFR 300
            ++K  TY+C+VWSSS DLK+LK WFLLLPL + CTGLSTK KRFTL+RSPLGNK +KDQFERKEYRSYF  +S D  +IL  L+IL++S+GV  K+L +
Sbjct:    4 TVKTHTYLCKVWSSSTDLKALKNWFLLLPLIKKCTGLSTKTKRFTLLRSPLGNKTAKDQFERKEYRSYFFLKSEDPSRILAFLNILRHSTGVKLKILIK 102          
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Match: A0A0U1V7T2_9PHAE (Ribosomal protein S10 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1V7T2_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.190e-38
Identity = 70/102 (68.63%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 MSLKKKT-YICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRSPLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFRS 303
            M  KKK  Y CEVWS+S DL SLK W LLLPL RS TGLSTKIKRFTL+RSPLGNK SKDQFER+EY+SYF  +S +  +IL +LDIL+YSSGV SK+L ++
Sbjct:    1 MHFKKKIIYSCEVWSTSTDLISLKYWSLLLPLFRSSTGLSTKIKRFTLLRSPLGNKASKDQFERREYKSYFFLKSENPSEILALLDILRYSSGVKSKILLKT 102          
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Match: A0A0U1V7C6_SCYLO (Ribosomal protein S10 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1V7C6_SCYLO)

HSP 1 Score: 129 bits (324), Expect = 6.890e-37
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   10 KKKTYICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRSPLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFR 300
            KK  Y CE WS+S+DLK+LK W LLLPL+ SCTGLSTK KRFTL+RSPLGNK +KDQFER+EYR +F F+S+   ++L  L +L+YSSG+ SKV+ +
Sbjct:    5 KKTLYSCEFWSASIDLKNLKYWSLLLPLTESCTGLSTKTKRFTLLRSPLGNKAAKDQFERREYRRHFIFKSKSPSELLAFLSVLRYSSGIKSKVVLK 101          
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Match: A0A6N3IW20_9PHAE (Ribosomal protein S10 n=11 Tax=Lessoniaceae TaxID=35120 RepID=A0A6N3IW20_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.370e-35
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 1
Query:   10 KKKTYICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRSPLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFRSK 306
            K  TYIC+VWS S DLKSL    LLLPL  S TGLST+IKRFTL+RSPLGNK +KDQFER+EYRSYF+ +S++  KIL  LDILKY +GV  KV+ + K
Sbjct:    6 KNITYICKVWSVSTDLKSLNFLLLLLPLFISSTGLSTRIKRFTLLRSPLGNKTAKDQFERREYRSYFTLKSQNPAKILAFLDILKYLNGVKFKVILQEK 104          
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Match: A0A6N3ISS5_9PHAE (Ribosomal protein S10 n=7 Tax=Ecklonia TaxID=105406 RepID=A0A6N3ISS5_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 7.620e-35
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 1
Query:   22 YICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRSPLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFRSK 306
            YIC+VWS+S DLKSL    LLLPL  S TGLST+IKRFTL+RSPLGNK +KDQFER+EYRSYF+F+S++  KIL  L+ILKY +GV  KV+ + K
Sbjct:   10 YICKVWSASTDLKSLNFLLLLLPLFISSTGLSTRIKRFTLLRSPLGNKTAKDQFERREYRSYFTFKSQNPAKILAFLEILKYLNGVKFKVILQEK 104          
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Match: A0A8F0FCY5_9PHAE (Ribosomal protein S10 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCY5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.250e-34
Identity = 64/95 (67.37%), Postives = 74/95 (77.89%), Query Frame = 1
Query:   22 YICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRSPLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFRSK 306
            YIC+VWS S D KSL    LLLPLS S TGLSTKIKRFTL+RSPLGNK +KDQFER+EYRSYF+ +SR   KIL  +DILKY +GV  KV+ + K
Sbjct:   10 YICKVWSVSTDFKSLNSLALLLPLSISSTGLSTKIKRFTLLRSPLGNKSAKDQFERREYRSYFTIKSRSPSKILAFIDILKYLNGVKFKVVLQEK 104          
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Match: A0A8F0K0F5_9PHAE (Ribosomal protein S10 n=1 Tax=Cymathaere triplicata TaxID=309354 RepID=A0A8F0K0F5_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.810e-34
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 1
Query:   22 YICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRSPLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFRSK 306
            YIC+VWS S D KSL  W LLLPLS S TGL+T+IKRFTL+RSPLGNK +KDQFER+EYRSYF+ +SR   K+L  + IL+Y +GV  KV+ + K
Sbjct:   10 YICKVWSGSTDFKSLNSWSLLLPLSISSTGLATRIKRFTLLRSPLGNKAAKDQFERREYRSYFTIKSRSPAKVLAFIGILRYLNGVKFKVILQEK 104          
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Match: A0A4D6E534_9PHAE (Ribosomal protein S10 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E534_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.190e-33
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = 1
Query:   22 YICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRSPLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFRSK 306
            YIC+VWS S D KSL    LLLPLS   TGLSTKIKRFTL+RSPLGNK SKDQFER+EYRSYF+ +S+   KIL  LDILKY +GV  KV+ + K
Sbjct:   19 YICKVWSVSTDFKSLNYLSLLLPLSIYSTGLSTKIKRFTLLRSPLGNKASKDQFERREYRSYFTIKSQSSSKILAFLDILKYLNGVKFKVVLQEK 113          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7680.16616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3G5FPL8_9PHAE3.960e-4574.00Ribosomal protein S10 n=1 Tax=Cladosiphon okamuran... [more]
A0A089MX90_PETFA3.860e-4170.10Ribosomal protein S10 n=1 Tax=Petalonia fascia Tax... [more]
A0A2H4ZR19_9PHAE7.210e-3965.66Ribosomal protein S10 n=1 Tax=Endarachne binghamia... [more]
A0A0U1V7T2_9PHAE2.190e-3868.63Ribosomal protein S10 n=1 Tax=Colpomenia peregrina... [more]
A0A0U1V7C6_SCYLO6.890e-3762.89Ribosomal protein S10 n=1 Tax=Scytosiphon lomentar... [more]
A0A6N3IW20_9PHAE5.370e-3565.66Ribosomal protein S10 n=11 Tax=Lessoniaceae TaxID=... [more]
A0A6N3ISS5_9PHAE7.620e-3566.32Ribosomal protein S10 n=7 Tax=Ecklonia TaxID=10540... [more]
A0A8F0FCY5_9PHAE2.250e-3467.37Ribosomal protein S10 n=2 Tax=Laminariales TaxID=2... [more]
A0A8F0K0F5_9PHAE4.810e-3463.16Ribosomal protein S10 n=1 Tax=Cymathaere triplicat... [more]
A0A4D6E534_9PHAE1.190e-3367.37Ribosomal protein S10 n=2 Tax=Laminariaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7680contigL-elsbetiae_contig7680:4356..4664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.3244746-CDS-L-elsbetiae_contig7680:4355..46641622816853.3244746-CDS-L-elsbetiae_contig7680:4355..4664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7680 4356..4664 +
1691683862.766207-CDS-L-elsbetiae_contig7680:4355..46641691683862.766207-CDS-L-elsbetiae_contig7680:4355..4664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7680 4356..4664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7680.16616.1prot_L-elsbetiae_contig7680.16616.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7680 4356..4664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7680.16616.1

>prot_L-elsbetiae_contig7680.16616.1 ID=prot_L-elsbetiae_contig7680.16616.1|Name=mRNA_L-elsbetiae_contig7680.16616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MSLKKKTYICEVWSSSVDLKSLKIWFLLLPLSRSCTGLSTKIKRFTLIRS
PLGNKKSKDQFERKEYRSYFSFESRDLPKILKMLDILKYSSGVISKVLFR
SK*
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mRNA from alignment at L-elsbetiae_contig7680:4356..4664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7680.16616.1 ID=mRNA_L-elsbetiae_contig7680.16616.1|Name=mRNA_L-elsbetiae_contig7680.16616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=309bp|location=Sequence derived from alignment at L-elsbetiae_contig7680:4356..4664+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTTAAAAAAAAAAACTTATATTTGTGAAGTTTGGTCTAGTTCTGT AGATTTAAAAAGTTTAAAAATTTGGTTCTTATTATTACCTCTTTCCCGTT CTTGTACAGGTTTGTCAACAAAAATAAAGCGCTTTACATTAATTCGGTCT CCTTTAGGTAATAAAAAATCTAAAGATCAATTTGAGAGAAAAGAATATCG TAGTTATTTTTCTTTTGAATCTAGAGATCTTCCTAAAATTCTAAAAATGC TTGATATCTTAAAATATTCTAGTGGTGTTATATCTAAGGTTTTATTTAGA TCTAAATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7680:4356..4664+

>mRNA_L-elsbetiae_contig7680.16616.1 ID=mRNA_L-elsbetiae_contig7680.16616.1|Name=mRNA_L-elsbetiae_contig7680.16616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig7680:4356..4664+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTTAAAAAAAAAAACTTATATTTGTGAAGTTTGGTCTAGTTCTGT
AGATTTAAAAAGTTTAAAAATTTGGTTCTTATTATTACCTCTTTCCCGTT
CTTGTACAGGTTTGTCAACAAAAATAAAGCGCTTTACATTAATTCGGTCT
CCTTTAGGTAATAAAAAATCTAAAGATCAATTTGAGAGAAAAGAATATCG
TAGTTATTTTTCTTTTGAATCTAGAGATCTTCCTAAAATTCTAAAAATGC
TTGATATCTTAAAATATTCTAGTGGTGTTATATCTAAGGTTTTATTTAGA
TCTAAATAAATGTCTTTAAAAAAAAAAACTTATATTTGTGAAGTTTGGTC
TAGTTCTGTAGATTTAAAAAGTTTAAAAATTTGGTTCTTATTATTACCTC
TTTCCCGTTCTTGTACAGGTTTGTCAACAAAAATAAAGCGCTTTACATTA
ATTCGGTCTCCTTTAGGTAATAAAAAATCTAAAGATCAATTTGAGAGAAA
AGAATATCGTAGTTATTTTTCTTTTGAATCTAGAGATCTTCCTAAAATTC
TAAAAATGCTTGATATCTTAAAATATTCTAGTGGTGTTATATCTAAGGTT
TTATTTAGATCTAAATAA
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