mRNA_L-elsbetiae_contig7679.16609.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7679.16609.1
Unique NamemRNA_L-elsbetiae_contig7679.16609.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7679.16609.1 vs. uniprot
Match: A0A6H5KX02_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX02_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.800e-6
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:  196 ASPSSGLDGTRGDMIKTASAAIAGVLASTAILPGEALAAAKPDPNRK 336
            ASP +GLDGTR D+I+TASAA+AG+L S+A+LP  ALAAAK +PNR+
Sbjct:   45 ASPRAGLDGTRRDVIQTASAAVAGLL-SSAVLPAGALAAAKAEPNRR 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7679.16609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX02_9PHAE1.800e-668.09Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7679contigL-elsbetiae_contig7679:8011..8347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-01_006400.1
Exons1
Model size338
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816852.8398716-CDS-L-elsbetiae_contig7679:8010..83461622816852.8398716-CDS-L-elsbetiae_contig7679:8010..8346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7679 8011..8346 +
1691683862.4535944-CDS-L-elsbetiae_contig7679:8010..83461691683862.4535944-CDS-L-elsbetiae_contig7679:8010..8346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7679 8011..8346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7679.16609.1prot_L-elsbetiae_contig7679.16609.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7679 8011..8346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7679.16609.1

>prot_L-elsbetiae_contig7679.16609.1 ID=prot_L-elsbetiae_contig7679.16609.1|Name=mRNA_L-elsbetiae_contig7679.16609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
AHYRPTDCSVSVWRNRPRFPASYLHICFSMRSHAFEVVLALGALAVGNGF
IGQVSSSSQSMLRMSASPSSGLDGTRGDMIKTASAAIAGVLASTAILPGE
ALAAAKPDPNRK
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mRNA from alignment at L-elsbetiae_contig7679:8011..8347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7679.16609.1 ID=mRNA_L-elsbetiae_contig7679.16609.1|Name=mRNA_L-elsbetiae_contig7679.16609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=337bp|location=Sequence derived from alignment at L-elsbetiae_contig7679:8011..8347+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCATTACCGTCCCACCGATTGTTCTGTCTCTGTGTGGAGAAACAGACC
CCGCTTCCCCGCATCCTATCTTCACATCTGCTTCTCGATGCGTTCCCATG
CCTTTGAAGTTGTGCTTGCGCTCGGTGCGCTCGCTGTTGGCAATGGCTTT
ATCGGTCAGGTTTCCTCTTCGTCTCAGTCGATGCTGAGGATGTCGGCATC
GCCATCATCAGGGTTGGACGGAACGAGGGGGGACATGATCAAAACAGCCA
GTGCGGCGATCGCTGGCGTGCTTGCCTCTACAGCAATACTGCCAGGAGAA
GCTCTCGCTGCAGCAAAGCCAGACCCCAACCGTAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7679:8011..8347+

>mRNA_L-elsbetiae_contig7679.16609.1 ID=mRNA_L-elsbetiae_contig7679.16609.1|Name=mRNA_L-elsbetiae_contig7679.16609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig7679:8011..8347+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCATTACCGTCCCACCGATTGTTCTGTCTCTGTGTGGAGAAACAGACC
CCGCTTCCCCGCATCCTATCTTCACATCTGCTTCTCGATGCGTTCCCATG
CCTTTGAAGTTGTGCTTGCGCTCGGTGCGCTCGCTGTTGGCAATGGCTTT
ATCGGTCAGGTTTCCTCTTCGTCTCAGTCGATGCTGAGGATGTCGGCATC
GCCATCATCAGGGTTGGACGGAACGAGGGGGGACATGATCAAAACAGCCA
GTGCGGCGATCGCTGGCGTGCTTGCCTCTACAGCAATACTGCCAGGAGAA
GCTCTCGCTGCAGCAAAGCCAGACCCCAACCGTAAAGCTCATTACCGTCC
CACCGATTGTTCTGTCTCTGTGTGGAGAAACAGACCCCGCTTCCCCGCAT
CCTATCTTCACATCTGCTTCTCGATGCGTTCCCATGCCTTTGAAGTTGTG
CTTGCGCTCGGTGCGCTCGCTGTTGGCAATGGCTTTATCGGTCAGGTTTC
CTCTTCGTCTCAGTCGATGCTGAGGATGTCGGCATCGCCATCATCAGGGT
TGGACGGAACGAGGGGGGACATGATCAAAACAGCCAGTGCGGCGATCGCT
GGCGTGCTTGCCTCTACAGCAATACTGCCAGGAGAAGCTCTCGCTGCAGC
AAAGCCAGACCCCAACCGTAAA
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