mRNA_L-elsbetiae_contig10114.165.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10114.165.1
Unique NamemRNA_L-elsbetiae_contig10114.165.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10114.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10114contigL-elsbetiae_contig10114:1442..2412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size971
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10114.165.1prot_L-elsbetiae_contig10114.165.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10114 1655..2272 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815243.2962914-UTR-L-elsbetiae_contig10114:1441..16541622815243.2962914-UTR-L-elsbetiae_contig10114:1441..1654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10114 1442..1654 +
1691682791.8545282-UTR-L-elsbetiae_contig10114:1441..16541691682791.8545282-UTR-L-elsbetiae_contig10114:1441..1654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10114 1442..1654 +
1622815243.3193326-UTR-L-elsbetiae_contig10114:2272..24121622815243.3193326-UTR-L-elsbetiae_contig10114:2272..2412Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10114 2273..2412 +
1691682791.8837585-UTR-L-elsbetiae_contig10114:2272..24121691682791.8837585-UTR-L-elsbetiae_contig10114:2272..2412Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10114 2273..2412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815243.3085876-CDS-L-elsbetiae_contig10114:1654..22721622815243.3085876-CDS-L-elsbetiae_contig10114:1654..2272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10114 1655..2272 +
1691682791.8648849-CDS-L-elsbetiae_contig10114:1654..22721691682791.8648849-CDS-L-elsbetiae_contig10114:1654..2272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10114 1655..2272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10114.165.1

>prot_L-elsbetiae_contig10114.165.1 ID=prot_L-elsbetiae_contig10114.165.1|Name=mRNA_L-elsbetiae_contig10114.165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
MCFLLPFPPGSPQLEGHMFLLAFLSSRMGIHPHHVRTHATVRPAPPAPRT
SGTHTYASFPAVIHAKQRWDSPPVALPLPFLVVEEKKETRRHGRSLAARN
RTGHRARGCLLSQHHPLRAWPSLSLFSRSSSQASKTQRSNQIKPACVYRL
PWAQAQGASSFIFQFIQTGQKPNQSLAIKAAKRNQTTTPSAASTHFLADV
ATSRP*
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mRNA from alignment at L-elsbetiae_contig10114:1442..2412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10114.165.1 ID=mRNA_L-elsbetiae_contig10114.165.1|Name=mRNA_L-elsbetiae_contig10114.165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=971bp|location=Sequence derived from alignment at L-elsbetiae_contig10114:1442..2412+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCCGCATGGGGAAGGGACAGATAAAACATCTCGGGGGAGCGCAACAGA
AGGAGAATGGCGCACGCTCCTCTTCCTCCCTTTCATCGGCTGCACTGCCC
CCAGTCCCGAAAACCAAGTCAAGTCAAGTTGGCACTCCTCTTTCTCGCCA
ACAAGAAGAGCAGCGACGACATGCGAGCACGTAATCTCTCCTTGCAGCAC
TTACTTCGATCGAATGTGTTTCCTCCTCCCTTTCCCCCCTGGTTCCCCAC
AACTAGAAGGACACATGTTTCTTCTCGCTTTTCTGTCTTCGCGGATGGGC
ATCCACCCACACCATGTACGTACGCATGCCACGGTCCGACCCGCTCCGCC
CGCACCACGCACTAGTGGTACACATACCTACGCTTCTTTCCCAGCAGTGA
TACACGCCAAACAACGCTGGGATTCCCCGCCGGTGGCGCTTCCCCTCCCC
TTCCTTGTTGTCGAGGAGAAAAAGGAAACAAGACGACACGGGCGCTCGTT
GGCCGCAAGAAATAGAACCGGGCATCGCGCGCGTGGTTGTTTGCTCTCGC
AGCATCACCCACTGCGAGCCTGGCCGAGCCTGTCTCTTTTCTCTCGTTCT
TCTTCCCAAGCCTCCAAAACACAACGCTCAAACCAAATCAAGCCTGCCTG
TGTATATAGATTGCCCTGGGCCCAGGCCCAGGGCGCTTCCAGTTTTATTT
TTCAATTTATTCAGACTGGTCAAAAACCAAACCAAAGCCTTGCAATAAAA
GCCGCAAAACGCAACCAAACCACCACACCGTCGGCGGCCTCGACACACTT
TCTTGCGGATGTCGCCACCAGTCGACCATAGATTTTTCGCCTTTCTGCGG
AACGGTCTAGGTTCAAAAAGTTGACCAATCAGGAAAAGCCGCGCGCGCAC
AACCAACGGGCTTCATTGGAGGGACAAGATTCCAAGCCGATTCCTTCACC
AGTTGCCATCCGTCGGTCGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10114:1442..2412+

>mRNA_L-elsbetiae_contig10114.165.1 ID=mRNA_L-elsbetiae_contig10114.165.1|Name=mRNA_L-elsbetiae_contig10114.165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig10114:1442..2412+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTTTCCTCCTCCCTTTCCCCCCTGGTTCCCCACAACTAGAAGGACA
CATGTTTCTTCTCGCTTTTCTGTCTTCGCGGATGGGCATCCACCCACACC
ATGTACGTACGCATGCCACGGTCCGACCCGCTCCGCCCGCACCACGCACT
AGTGGTACACATACCTACGCTTCTTTCCCAGCAGTGATACACGCCAAACA
ACGCTGGGATTCCCCGCCGGTGGCGCTTCCCCTCCCCTTCCTTGTTGTCG
AGGAGAAAAAGGAAACAAGACGACACGGGCGCTCGTTGGCCGCAAGAAAT
AGAACCGGGCATCGCGCGCGTGGTTGTTTGCTCTCGCAGCATCACCCACT
GCGAGCCTGGCCGAGCCTGTCTCTTTTCTCTCGTTCTTCTTCCCAAGCCT
CCAAAACACAACGCTCAAACCAAATCAAGCCTGCCTGTGTATATAGATTG
CCCTGGGCCCAGGCCCAGGGCGCTTCCAGTTTTATTTTTCAATTTATTCA
GACTGGTCAAAAACCAAACCAAAGCCTTGCAATAAAAGCCGCAAAACGCA
ACCAAACCACCACACCGTCGGCGGCCTCGACACACTTTCTTGCGGATGTC
GCCACCAGTCGACCATAGATGTGTTTCCTCCTCCCTTTCCCCCCTGGTTC
CCCACAACTAGAAGGACACATGTTTCTTCTCGCTTTTCTGTCTTCGCGGA
TGGGCATCCACCCACACCATGTACGTACGCATGCCACGGTCCGACCCGCT
CCGCCCGCACCACGCACTAGTGGTACACATACCTACGCTTCTTTCCCAGC
AGTGATACACGCCAAACAACGCTGGGATTCCCCGCCGGTGGCGCTTCCCC
TCCCCTTCCTTGTTGTCGAGGAGAAAAAGGAAACAAGACGACACGGGCGC
TCGTTGGCCGCAAGAAATAGAACCGGGCATCGCGCGCGTGGTTGTTTGCT
CTCGCAGCATCACCCACTGCGAGCCTGGCCGAGCCTGTCTCTTTTCTCTC
GTTCTTCTTCCCAAGCCTCCAAAACACAACGCTCAAACCAAATCAAGCCT
GCCTGTGTATATAGATTGCCCTGGGCCCAGGCCCAGGGCGCTTCCAGTTT
TATTTTTCAATTTATTCAGACTGGTCAAAAACCAAACCAAAGCCTTGCAA
TAAAAGCCGCAAAACGCAACCAAACCACCACACCGTCGGCGGCCTCGACA
CACTTTCTTGCGGATGTCGCCACCAGTCGACCATAG
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