mRNA_L-elsbetiae_contig767.16600.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig767.16600.1
Unique NamemRNA_L-elsbetiae_contig767.16600.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig767.16600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig767contigL-elsbetiae_contig767:2756..4999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size491
Cds size483
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816852.000731-UTR-L-elsbetiae_contig767:2755..27621622816852.000731-UTR-L-elsbetiae_contig767:2755..2762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig767 2756..2762 +
1691683861.7925527-UTR-L-elsbetiae_contig767:2755..27621691683861.7925527-UTR-L-elsbetiae_contig767:2755..2762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig767 2756..2762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816852.012311-CDS-L-elsbetiae_contig767:2762..28121622816852.012311-CDS-L-elsbetiae_contig767:2762..2812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 2763..2812 +
1691683861.8018398-CDS-L-elsbetiae_contig767:2762..28121691683861.8018398-CDS-L-elsbetiae_contig767:2762..2812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 2763..2812 +
1622816852.0266695-CDS-L-elsbetiae_contig767:3205..33131622816852.0266695-CDS-L-elsbetiae_contig767:3205..3313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 3206..3313 +
1691683861.8108923-CDS-L-elsbetiae_contig767:3205..33131691683861.8108923-CDS-L-elsbetiae_contig767:3205..3313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 3206..3313 +
1622816852.0374207-CDS-L-elsbetiae_contig767:3624..36831622816852.0374207-CDS-L-elsbetiae_contig767:3624..3683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 3625..3683 +
1691683861.821067-CDS-L-elsbetiae_contig767:3624..36831691683861.821067-CDS-L-elsbetiae_contig767:3624..3683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 3625..3683 +
1622816852.0482688-CDS-L-elsbetiae_contig767:4088..42161622816852.0482688-CDS-L-elsbetiae_contig767:4088..4216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 4089..4216 +
1691683861.832005-CDS-L-elsbetiae_contig767:4088..42161691683861.832005-CDS-L-elsbetiae_contig767:4088..4216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 4089..4216 +
1622816852.0629544-CDS-L-elsbetiae_contig767:4468..45291622816852.0629544-CDS-L-elsbetiae_contig767:4468..4529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 4469..4529 +
1691683861.8427627-CDS-L-elsbetiae_contig767:4468..45291691683861.8427627-CDS-L-elsbetiae_contig767:4468..4529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 4469..4529 +
1622816852.076623-CDS-L-elsbetiae_contig767:4922..49991622816852.076623-CDS-L-elsbetiae_contig767:4922..4999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 4923..4999 +
1691683861.854319-CDS-L-elsbetiae_contig767:4922..49991691683861.854319-CDS-L-elsbetiae_contig767:4922..4999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 4923..4999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig767.16600.1prot_L-elsbetiae_contig767.16600.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig767 2763..4999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig767.16600.1

>prot_L-elsbetiae_contig767.16600.1 ID=prot_L-elsbetiae_contig767.16600.1|Name=mRNA_L-elsbetiae_contig767.16600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MNVFLASFEVLDEAFRVFGNLWVDVATAVEVFHNAVEALFDALEPFLPLF
DVLFKIGDIFQALTCPPFLGFLCFIEDLIAAIIDVIFSPLEAIFAPLIDP
LVDLIGLPEIGFSISDIFPGGILPGIEPIGEIRSSALTLVQDVVEVFIDD
PLPALYEMNPA
back to top

mRNA from alignment at L-elsbetiae_contig767:2756..4999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig767.16600.1 ID=mRNA_L-elsbetiae_contig767.16600.1|Name=mRNA_L-elsbetiae_contig767.16600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig767:2756..4999+ (Laminarionema elsbetiae ELsaHSoW15)
GACAGCGATGAACGTCTTCCTTGCTTCTTTCGAGGTCCTCGACGAAGCTT
TCAGGGTGTGAGTACAAAACTGTCGTTCGGTGACGGGGCTGGTGTTTTTT
TTTCGAACTCCGATCGATCGATGTTGATCCAGAACATGTCGCTCAAGACA
GATTGTTTTGCATCCAATACATACAGACAGCGTTGAAACTCAGGTCTCTG
CTTAAGGTTGCCTGTACCAGAAGCACAGCCGTAGCCTCTGAGAGATGTAG
AGTAGGCTTACACATGCCTCAGATTTTAAAATTGCTCTGCCTGAGTATCG
ATTTTAATCGTTTTGCGAATCCTGGCACCATTTAGCTCTCCCGACTTTTC
TCCCGACGTGACGTGTTGCAATCGCTCCCGCCAGGATAAGACCTAGAGTG
CTTATGTTGAGCGCATCCATTTTCTAACCACGCTCGTGCACGTATGGCAG
GTTCGGCAATCTTTGGGTGGATGTGGCTACAGCGGTGGAGGTTTTCCATA
ATGCCGTCGAGGCTCTGTTTGATGCGCTCGAACCTTTTCTGCCGCTCTTC
GACGTGCTGTGAGTTATGTAGTCTAGGCTTTCGGGCGATTATGCGCGGAA
AATGGCGCCAATTGACGTTCGCCCGAGAGAGCATTCCTCGAACCTCGCTC
CAGTATTCGCCGAATACATCTAGGTCGTCTCTATTTATGTACCTGTAGCC
ACATAGAGAGCAGACCGTCATCTTAGTTTGCCGAAGTGTTTCACATTCAA
CCCCAAAATAAATACCACCGAATCTTTCGAAGCGTTGCACCAGAAAACAC
TCAGTAAACTTCGACGCCAATCTCCATCTTCACCTTGTTCCCGCCCATAT
CCACCTCCCTCCGCCACAGGTTCAAGATAGGAGACATTTTCCAGGCTTTA
ACTTGCCCGCCGTTCCTTGGGTTTCTCTGTGAGTGATAACCACAACGTCG
TTTGGCGAACACTCCTGAAGCCGAAGAGATGATGACCTGCGTACTTGAGC
TCCCCTCGGCGTGTAGTTTCGACCGAATATGTGCTTTGCCAAACGATTAG
CCAGGCAGCCCAAGTTTTGCAGGCCTTGCCGTTCTCCTCTTGAGAAGACT
GACACCAGTGCAGGCACTCCCACTTGCACGCGTCTTTTAGAACCGAAAGC
ATACCGAACGAGGCACGGCGTTGCCTGCGTGACGAAAGGATACCGTGTTC
TACTCGCTGCTGTTTGGGTTCTCCCGGTCGTGCTGCTTACCGTGGGCGGA
CGCTCCACCGTCGGAAGGCTTTCGCTAAAACCACGAGGTGTTCAATAAGC
GTCGATATCGAACCCCACCTCTCTCTTGCACAGGTTTCATCGAAGACCTC
ATCGCTGCGATAATCGACGTTATCTTCTCTCCCCTCGAGGCCATCTTCGC
GCCGCTGATCGACCCGCTCGTTGACCTGATCGGTCTTCCCGAAATCGGCT
TCAGCATCTCGGTGAGTTTCGAAGACAGCATGCCGGGGAACGCGGCTTCG
CGTGTGCGTGTGTATGCTCTCCGTCATGCCATGCCGGCGGCTCGATGGCC
ACGGGCTGACGTATGCCCGGGGCTGTCGCAACGCAGCATCATCAGTTTGA
CCACCGCAGGAGTAGACATTAAAGTTCGACGAGGTTTTGCTAGAGTCTTG
TGTTTGAGGATGTATGCACGAATACGCTTTAATGTACGCCATGTGTTGAC
ATTGTCGCGACAGGACATCTTTCCCGGTGGCATTCTCCCGGGGATCGAAC
CTATCGGGGAAATTCGTTCTTCAGGTGAGAGCCCCCGTTTGCTTGAGGCG
TTGTTTTATCGTCCAGCCTGATTCTGCCTGGAGGAGGCACACACATAAAT
GTTACCGTAGTTTTTCGTTCCACTCCGGGTCTGTGGGCGGGCATACATGT
CCTGGGACACCCCCTCGAAAGCCAAACGTTGCAGGTTGTGAATGTAAAGC
CCCATTCACGTGGCGGCCAACTCTCTCTCTTTTTGTCTCTCTTCCCTCTC
TCTCTCTCTACCTCTCCCGTTTGCAATCAGTCGTCGCTTTGTCCGAAGCC
TACACAGTATAGTCTACACCCCGTGTCGTATTAATCCTTGCGGTTTCGAC
TCCCCAACTGACCCACCGTCTGCACACACCCACCTTCGTTGTTCGTGCGG
AATGCATATCTACTCAGCCCTGACGCTCGTGCAGGATGTGGTCGAGGTGT
TCATCGACGACCCCCTCCCGGCACTCTACGAGATGAACCCAGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig767:2756..4999+

>mRNA_L-elsbetiae_contig767.16600.1 ID=mRNA_L-elsbetiae_contig767.16600.1|Name=mRNA_L-elsbetiae_contig767.16600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig767:2756..4999+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTCTTCCTTGCTTCTTTCGAGGTCCTCGACGAAGCTTTCAGGGT
ATGAACGTCTTCCTTGCTTCTTTCGAGGTCCTCGACGAAGCTTTCAGGGT
GTTCGGCAATCTTTGGGTGGATGTGGCTACAGCGGTGGAGGTTTTCCATA
ATGCCGTCGAGGCTCTGTTTGATGCGCTCGAACCTTTTCTGCCGCTCTTC
GACGTGCTGTTCGGCAATCTTTGGGTGGATGTGGCTACAGCGGTGGAGGT
TTTCCATAATGCCGTCGAGGCTCTGTTTGATGCGCTCGAACCTTTTCTGC
CGCTCTTCGACGTGCTGTTCAAGATAGGAGACATTTTCCAGGCTTTAACT
TGCCCGCCGTTCCTTGGGTTTCTCTGTTCAAGATAGGAGACATTTTCCAG
GCTTTAACTTGCCCGCCGTTCCTTGGGTTTCTCTGTTTCATCGAAGACCT
CATCGCTGCGATAATCGACGTTATCTTCTCTCCCCTCGAGGCCATCTTCG
CGCCGCTGATCGACCCGCTCGTTGACCTGATCGGTCTTCCCGAAATCGGC
TTCAGCATCTCGGTTTCATCGAAGACCTCATCGCTGCGATAATCGACGTT
ATCTTCTCTCCCCTCGAGGCCATCTTCGCGCCGCTGATCGACCCGCTCGT
TGACCTGATCGGTCTTCCCGAAATCGGCTTCAGCATCTCGGACATCTTTC
CCGGTGGCATTCTCCCGGGGATCGAACCTATCGGGGAAATTCGTTCTTCA
GGACATCTTTCCCGGTGGCATTCTCCCGGGGATCGAACCTATCGGGGAAA
TTCGTTCTTCAGCCCTGACGCTCGTGCAGGATGTGGTCGAGGTGTTCATC
GACGACCCCCTCCCGGCACTCTACGAGATGAACCCAGCCCCCTGACGCTC
GTGCAGGATGTGGTCGAGGTGTTCATCGACGACCCCCTCCCGGCACTCTA
CGAGATGAACCCAGCC
back to top